Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011028

Physical Location & Seq

Genomic Coordinates Forward (+)

5419608 .. 5426527

Gene Structure 6920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3576 bp

ATGGAAGAAGAGCCGGAGTACGAAGAGCAATACAATGACGACGACGACGAAGATGAGATAACGCAGGAAGACGCCTGGGCTGTGATTTCGGCCTATTTCGAAGAGAAGGGCCTGGTGAGGCAGCAGCTCGACTCGTTCGATGAGTTCATCCAGAACACAATGCAGGAGATCGTCGACGAGGCTGCCGATATCGAAATCCGACCCGAATCGCAGCATAATCCGGGTCACCAGCCCGATTTCGCTGAGACTATATACAAAATCAGCTTCGGTCAGATTTATCTTAGTAAGCCTATGATGACTGAGTCGGACGGTGAGACGGCGACGCTGTTTCCGAAGGCGGCGAGGTTGCGAAACTTGACTTACTCGGCGCCTCTGTATGTGGATGTGTCAAAGAGGGTTATAAAGAAAGGACATGATGGTGAGGAAGTCACCGAGACTCAGGATTTTACCAAAGTGTTTATTGGCAAGGTTCCTATTATGCTCCGTTCGAGTTATTGTACATTGTATCAAAATTCCGAGAAAGACTTGACAGAGCTGGGGGAGTGTCCTTATGACCAAGGAGGGTATTTCATTATCAATGGGAGTGAGAAGGTGTTGATTGCTCAGGAGAAGATGAGCACGAACCACGTCTATGTCTTTAAGAAGAGGCAGCCTAATAAGTACGCTTATGTTGGGGAGGTGCGGTCTATGGCCGAGTCTCAAAACCGACCTCCCAGCACCATGTTCGTTCGTATGCTTTCCAGGACCAGCTCCAAAGGGGGTTCTTCCGGACAATATATTCGCGCTACTCTTCCATATATTCGAGCTGAAATTCCCATCATTATTGTCTTCCGGGCTCTCGGCTTTGTGGCTGACAAAGATATTTTGGAGCACATATGCTATGATTTTGCTGATACACAAATGATGGAGCTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTTATTCAGAATCAACAGGTGGCTCTAGATTATATTGGTAAAAGAGGTGCAACAGCTGGTGTACCCAGAGACAAGAGGATAAGGTATGCGAGAGATATTCTTCAAAAGGAAATGCTTCCACATGTTGGTACTGGGGAGTTTTGTGAGACCAAGAAAGCATACTATTTCGGATACATCATTCACAGGCTTCTACTGTGTGCACTTGGTCGGAGGGCAGAAGATGATAGGGATCACTATGGCAACAAGAGGCTGGATCTTGCTGGCCCCTTGCTTGGAAGCTTGTTTAGATCGCTATTCAGGAAGTTAACCAAGGATGTCAAAGGTTATGTGCAGAAGTGTGTTGATAATGGAAAGGACGTTAACCTGCAATTTGCAATCAAAGCAAAAACCATTACCAGTGGTCTCAAATATTCACTTGCTACTGGGAACTGGGGGCAAGCAAATGCAGCTGGGACAAGGGCTGGAGTGTCGCAGGTGTTAAATCGTTTGACATATGCATCCACATTATCACATTTGCGGAGGCTAAATTCTCCCATAGGGCGTGAAGGTAAACTTGCCAAACCCCGGCAGTTGCACAATTCACAGTGGGGAATGATGTGTCCTGCTGAGACACCTGAAGGGCAGGCATGTGGGCTTGTAAAGAACCTGGCATTGATGGTATACATAACAGTGGGATCAGCTGCGTATCCAATCTTAGAGTTTTTAGAAGAATGGGGTACAGAAAATTTTGAGGAAATTTCCCCTGCCGTTATTCCCCAAGCCACAAAGATTTTTGTTAATGGCTGCTGGGTTGGCATACATCGTGATCCTGAAATGTTGGTGAGAACATTGAGGAAGCTTAGGCGGCGGGTGGATGTCAATACTGAAGTTGGGGTTGTCAGAGATATCCGTCTGAAAGAGTTGCGGATATATACGGACTATGGTCGTTGCAGTCGTCCATTATTCATTGTGGACAAGCAAAGGTTGCTCATAAAGAAGAAAGATATTCATGCATTGCAGCAAAGGGAAAACCCTGAAGACGGTGGTTGGCATGATCTTGTAGCAAAAGGATTTATTGAATATATTGACACTGAAGAAGAGGAGACCACTATGATTTCAATGACAATTAATGATCTTGTACAAGCAAGGCTCAATCCTGAGGAGGCATATTCTGATACATATACTCATTGCGAGATTCACCCCTCACTTATATTGGGTGTTTGTGCTTCAATTATCCCATTTCCTGATCATAATCAGTCTCCACGTAATACATATCAGTCTGCCATGGGAAAGCAAGCTATGGGAATTTATGTCACCAATTATCAGTTCCGAATGGACACACTGGCTTATGTTCTGTACTACCCTCAGAAGCCGCTTGTCACTACAAGAGCCATGGAGCATCTTCACTTCAGGCAACTTCCAGCCGGAATTAATGCCATTGTCGCCATTTCCTGCTATTCTGGTTATAACCAGGAGGATTCTGTCATTATGAATCAATCCTCTATTGATCGTGGATTTTTCCGGTCACTGTTCTTCCGCTCCTATAGGGATGAGGAGAAAAAGATGGGGACTCTTGTCAAAGAAGATTTTGGACGTCCAGACAGAGCAAATACGATGGGTATGCGGCATGGATCTTATGATAAATTGGAAGATGATGGTCTTGCACCTCCTGGAACCAGGGTTTCAGGTGAGGATGTTATCATAGGGAAGACCACTCCCATTGCTCCGGAGGAGGCTCAGGGGCAAGCTGCTTCACGTTACTCACGTCGTGATCATAGCATAAGCTTACGGCACAGTGAAACGGGGATTGTGGATCAGGTCTTATTGACTACCAATGCCGATGGGTTGAGGTTTGTGAAAGTAAGGGTGAGGTCTGTTCGAATTCCACAGATTGGGGATAAATTTAGTAGTAGGCATGGACAGAAAGGGACGGTGGGTATGACGTATACACAAGAAGACATGCCATGGACTGTAGAAGGAGTCACCCCTGATATTATTGTGAACCCTCATGCTATTCCTTCCCGAATGACCATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTTGCAGCACACATGGGAAAGGAAGGAGATGCTACTCCTTTTACGGATGTGACTGTGGACAATATTAGCAAAGCTCTCCACAAATGTGGATATCAAATGCGGGGATTTGAGACCATGTATAATGGTCACACCGGTCGGCGATTGAGTGCGATGATTTTCCTTGGCCCTACATATTACCAGAGATTGAAGCATATGGTCGATGATAAGATCCATTCACGTGGTCGGGGTCCTGTACAAATTCTTACTAGGCAACCTGCTGAGGGACGGTCCCGTGATGGTGGTTTACGATTTGGAGAGATGGAACGAGATTGCATGATTGCCCATGGTGCTGCTCACTTTCTTAAAGAGAGATTGTTTGATCAGAGTGATGCTTATAGGGTTCATGTCTGTGAGCGCTGTGGTTTAATAGCTATTGCAAATCTCAAGAAGAATTCATTCGAGTGCAGAGGTTGCAAGAACAAAACTGATATTGTTCAGGTTCATATTCCTTATGCCTGCAAGCTGCTTTTCCAAGAGCTTATGGCCATGGCTATAGCACCAAGAATGCTCACAAAGGATGTCAAGCCTATCAAAGATAAGAAGAAAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1192

Amino Acids

134.97

Weight (kDa)

7.74

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	37 - 446	1.7e-78	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	207 - 398	5.7e-55	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	471 - 535	1e-24	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	570 - 631	8.6e-24	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	656 - 707	6.5e-18	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	714 - 1085	1.9e-141	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1087 - 1178	1.6e-35	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21710
fragaria_vesca	FvH4_3g09270
malus_domestica	MD05G1313100.v1.1 MD10G1295300.v1.1
prunus_persica	Prupe.4G046700_v2.0.a1
pyrus_communis	pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720
rosa_chinensis	RchiOBHm_Chr5g0008301
rosa_laevigata	RLG00000031560
rosa_multiflora	Rmu_sc0021840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068160
rosa_rugosa	Rorug04G0434800
rosa_samantha	Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600
rosa_wichuraiana	Rw5G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	401, 2385
AarI	CACCTGC	1 cut(s)	1402
AatII	GACGTC	1 cut(s)	2515
Acc36I	ACCTGC	3 cut(s)	1311, 1402, 3244
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	2 cut(s)	1064, 2810
AccBSI	CCGCTC	1 cut(s)	2457
AccI	GTMKAC	3 cut(s)	174, 1599, 2864
AccII	CGCG	1 cut(s)	783
AccIII	TCCGGA	2 cut(s)	767, 2644
AclWI	GGATC	7 cut(s)	1176, 1200, 1621, 1739, 2557, 2739, 3184
AcoI	YGGCCR	2 cut(s)	690, 3504
AcuI	CTGAAG	5 cut(s)	1575, 1824, 1974, 2031, 2311
AcvI	CACGTG	1 cut(s)	3200
AcyI	GRCGYC	3 cut(s)	72, 368, 2512
AdeI	CACNNNGTG	1 cut(s)	2687
AfaI	GTAC	9 cut(s)	20, 499, 662, 1002, 1069, 1657, 2058, 2276, 3216
AfeI	AGCGCT	1 cut(s)	3377
AfiI	CCNNNNNNNGG	6 cut(s)	1064, 1211, 1503, 1958, 2810, 3242
AflIII	ACRYGT	1 cut(s)	1060
AgeI	ACCGGT	1 cut(s)	3113
AgsI	TTSAA	5 cut(s)	1043, 1997, 2037, 2148, 3169
AhdI	GACNNNNNGTC	1 cut(s)	2952
AjiI	CACGTC	2 cut(s)	628, 2684
AjnI	CCWGG	8 cut(s)	74, 111, 740, 924, 1584, 2388, 2587, 2594
AjuI	GAANNNNNNNTTGG	2 cut(s)	2228, 2260
AleI	CACNNNNGTG	1 cut(s)	3066
Alw21I	GWGCWC	3 cut(s)	620, 873, 1141
Alw44I	GTGCAC	1 cut(s)	1137
AlwI	GGATC	7 cut(s)	1176, 1200, 1621, 1739, 2557, 2739, 3184
Aor13HI	TCCGGA	2 cut(s)	767, 2644
Aor51HI	AGCGCT	1 cut(s)	3377
AoxI	GGCC	6 cut(s)	90, 109, 690, 1201, 3145, 3504
ApaLI	GTGCAC	1 cut(s)	1137
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AseI	ATTAAT	2 cut(s)	2046, 2349
AsiGI	ACCGGT	1 cut(s)	3113
Asp700I	GAANNNNTTC	2 cut(s)	1053, 3416
AspLEI	GCGC	3 cut(s)	370, 785, 3378
AspS9I	GGNCC	6 cut(s)	109, 744, 1202, 3146, 3209, 3249
AsuC2I	CCSGG	3 cut(s)	222, 833, 1504
AsuII	TTCGAA	2 cut(s)	99, 2797
AvaII	GGWCC	3 cut(s)	744, 3209, 3249
AxyI	CCTNAGG	1 cut(s)	2076
BaeGI	GKGCMC	1 cut(s)	1141
BalI	TGGCCA	1 cut(s)	3506
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	838
BbrPI	CACGTG	1 cut(s)	3200
BbsI	GAAGAC	5 cut(s)	75, 820, 1962, 2633, 2880
Bbv12I	GWGCWC	3 cut(s)	620, 873, 1141
BbvCI	CCTCAGC	1 cut(s)	3240
BceAI	ACGGC	3 cut(s)	333, 1670, 2723
BcgI	CGANNNNNNTGC	6 cut(s)	164, 198, 706, 740, 2521, 2555
BciT130I	CCWGG	8 cut(s)	76, 113, 742, 926, 1586, 2390, 2589, 2596
BciVI	GTATCC	2 cut(s)	1103, 1635
BclI	TGATCA	3 cut(s)	2164, 2689, 3340
BcnI	CCSGG	3 cut(s)	222, 833, 1504
BfaI	CTAG	2 cut(s)	965, 3228
BfmI	CTRYAG	3 cut(s)	2461, 2889, 3513
BfoI	RGCGCY	2 cut(s)	371, 3379
BfuAI	ACCTGC	3 cut(s)	1311, 1402, 3244
BfuI	GTATCC	2 cut(s)	1103, 1635
Bme18I	GGWCC	3 cut(s)	744, 3209, 3249
BmeRI	GACNNNNNGTC	1 cut(s)	2952
BmgBI	CACGTC	2 cut(s)	628, 2684
BmgT120I	GGNCC	6 cut(s)	109, 744, 1202, 3146, 3209, 3249
BmiI	GGNNCC	7 cut(s)	369, 471, 1204, 2593, 3210, 3251, 3571
BmrI	ACTGGG	3 cut(s)	1080, 1371, 1378
BmsI	GCATC	4 cut(s)	1445, 2326, 3001, 3340
BmuI	ACTGGG	3 cut(s)	1080, 1371, 1378
BoxI	GACNNNNGTC	2 cut(s)	1860, 2492
BpiI	GAAGAC	5 cut(s)	75, 820, 1962, 2633, 2880
BpmI	CTGGAG	1 cut(s)	1422
Bpu10I	CCTNAGC	4 cut(s)	603, 1778, 2655, 3240
Bpu14I	TTCGAA	2 cut(s)	99, 2797
BpuEI	CTTGAG	1 cut(s)	3389
BpuMI	CCSGG	3 cut(s)	222, 833, 1504
BsaAI	YACGTR	2 cut(s)	2183, 3200
BsaBI	GATNNNNATC	2 cut(s)	1167, 2169
BsaHI	GRCGYC	3 cut(s)	72, 368, 2512
BsaI	GGTCTC	4 cut(s)	1079, 1346, 2015, 3086
BsaWI	WCCGGW	4 cut(s)	767, 2439, 2644, 3113
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	6 cut(s)	1064, 1211, 1503, 1958, 2810, 3242
Bse118I	RCCGGY	1 cut(s)	3113
Bse1I	ACTGG	5 cut(s)	1075, 1335, 1366, 1373, 2265
Bse21I	CCTNAGG	1 cut(s)	2076
Bse3DI	GCAATG	3 cut(s)	1931, 2104, 2637
Bse8I	GATNNNNATC	2 cut(s)	1167, 2169
BseAI	TCCGGA	2 cut(s)	767, 2644
BseBI	CCWGG	8 cut(s)	76, 113, 742, 926, 1586, 2390, 2589, 2596
BseGI	GGATG	9 cut(s)	147, 388, 1258, 1436, 1798, 2473, 2617, 3034, 3544
BseJI	GATNNNNATC	2 cut(s)	1167, 2169
BseLI	CCNNNNNNNGG	6 cut(s)	1064, 1211, 1503, 1958, 2810, 3242
BseMI	GCAATG	3 cut(s)	1931, 2104, 2637
BseMII	CTCAG	9 cut(s)	234, 291, 452, 617, 1536, 2067, 2297, 2669, 3231
BseNI	ACTGG	5 cut(s)	1075, 1335, 1366, 1373, 2265
BseRI	GAGGAG	4 cut(s)	2033, 2093, 2486, 2663
BseSI	GKGCMC	1 cut(s)	1141
BseYI	CCCAGC	4 cut(s)	535, 713, 1388, 1725
BsgI	GTGCAG	2 cut(s)	1289, 3445
Bsh1236I	CGCG	1 cut(s)	783
Bsh1285I	CGRYCG	1 cut(s)	3118
BshFI	GGCC	6 cut(s)	92, 111, 692, 1203, 3147, 3506
BshNI	GGYRCC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	3113
BsiEI	CGRYCG	1 cut(s)	3118
BsiHKAI	GWGCWC	3 cut(s)	620, 873, 1141
BsiSI	CCGG	9 cut(s)	14, 221, 768, 832, 1504, 2343, 2440, 2645, 3114
BslFI	GGGAC	5 cut(s)	1405, 2500, 2860, 3235, 3258
BslI	CCNNNNNNNGG	6 cut(s)	1064, 1211, 1503, 1958, 2810, 3242
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	5 cut(s)	1405, 2500, 2860, 3235, 3258
BsmI	GAATGC	1 cut(s)	3531
BsnI	GGCC	6 cut(s)	92, 111, 692, 1203, 3147, 3506
Bso31I	GGTCTC	4 cut(s)	1079, 1346, 2015, 3086
Bsp119I	TTCGAA	2 cut(s)	99, 2797
Bsp1286I	GDGCHC	4 cut(s)	620, 838, 873, 1141
Bsp13I	TCCGGA	2 cut(s)	767, 2644
Bsp1407I	TGTACA	3 cut(s)	497, 2056, 3214
Bsp19I	CCATGG	5 cut(s)	2202, 2310, 2882, 3304, 3507
BspANI	GGCC	6 cut(s)	92, 111, 692, 1203, 3147, 3506
BspCNI	CTCAG	9 cut(s)	235, 292, 451, 616, 1537, 2068, 2296, 2668, 3232
BspEI	TCCGGA	2 cut(s)	767, 2644
BspFNI	CGCG	1 cut(s)	783
BspLI	GGNNCC	7 cut(s)	369, 471, 1204, 2593, 3210, 3251, 3571
BspMI	ACCTGC	3 cut(s)	1311, 1402, 3244
BspPI	GGATC	7 cut(s)	1176, 1200, 1621, 1739, 2557, 2739, 3184
BspQI	GCTCTTC	2 cut(s)	3, 18
BspT104I	TTCGAA	2 cut(s)	99, 2797
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	4 cut(s)	1079, 1346, 2015, 3086
BsrBI	CCGCTC	1 cut(s)	2457
BsrDI	GCAATG	3 cut(s)	1931, 2104, 2637
BsrFI	RCCGGY	1 cut(s)	3113
BsrGI	TGTACA	3 cut(s)	497, 2056, 3214
BsrI	ACTGG	5 cut(s)	1075, 1335, 1366, 1373, 2265
BssAI	RCCGGY	1 cut(s)	3113
BssNAI	GTATAC	2 cut(s)	1600, 2865
BssNI	GRCGYC	3 cut(s)	72, 368, 2512
BssT1I	CCWWGG	8 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3304, 3507
Bst1107I	GTATAC	2 cut(s)	1600, 2865
Bst2UI	CCWGG	8 cut(s)	76, 113, 742, 926, 1586, 2390, 2589, 2596
Bst6I	CTCTTC	6 cut(s)	3, 18, 96, 638, 795, 2010
BstACI	GRCGYC	3 cut(s)	72, 368, 2512
BstAPI	GCANNNNNTGC	2 cut(s)	1903, 3432
BstAUI	TGTACA	3 cut(s)	497, 2056, 3214
BstBAI	YACGTR	2 cut(s)	2183, 3200
BstBI	TTCGAA	2 cut(s)	99, 2797
BstC8I	GCNNGC	7 cut(s)	1201, 1377, 1563, 2214, 2664, 3478, 3482
BstDSI	CCRYGG	5 cut(s)	2202, 2310, 2882, 3304, 3507
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	9 cut(s)	147, 388, 1258, 1436, 1798, 2473, 2617, 3034, 3544
BstFNI	CGCG	1 cut(s)	783
BstH2I	RGCGCY	2 cut(s)	371, 3379
BstHHI	GCGC	3 cut(s)	370, 785, 3378
BstMCI	CGRYCG	1 cut(s)	3118
BstMWI	GCNNNNNNNGC	8 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308, 3432
BstNI	CCWGG	8 cut(s)	76, 113, 742, 926, 1586, 2390, 2589, 2596
BstNSI	RCATGY	3 cut(s)	1064, 1569, 2881
BstPAI	GACNNNNGTC	2 cut(s)	1860, 2492
BstPI	GGTNACC	1 cut(s)	224
BstSFI	CTRYAG	3 cut(s)	2461, 2889, 3513
BstSLI	GKGCMC	1 cut(s)	1141
BstUI	CGCG	1 cut(s)	783
BstV2I	GAAGAC	5 cut(s)	75, 820, 1962, 2633, 2880
BstX2I	RGATCY	3 cut(s)	1192, 2549, 3189
BstXI	CCANNNNNNTGG	2 cut(s)	3068, 3200
BstYI	RGATCY	3 cut(s)	1192, 2549, 3189
BstZ17I	GTATAC	2 cut(s)	1600, 2865
Bsu36I	CCTNAGG	1 cut(s)	2076
BsuI	GTATCC	2 cut(s)	1103, 1635
BsuRI	GGCC	6 cut(s)	92, 111, 692, 1203, 3147, 3506
BtgI	CCRYGG	5 cut(s)	2202, 2310, 2882, 3304, 3507
BtgZI	GCGATG	1 cut(s)	3146
BtrI	CACGTC	2 cut(s)	628, 2684
BtsCI	GGATG	9 cut(s)	147, 388, 1258, 1436, 1798, 2473, 2617, 3034, 3544
BtsIMutI	CAGTG	7 cut(s)	1342, 1529, 1614, 2007, 2258, 2444, 2719
BveI	ACCTGC	3 cut(s)	1311, 1402, 3244
Cac8I	GCNNGC	7 cut(s)	1201, 1377, 1563, 2214, 2664, 3478, 3482
CfoI	GCGC	3 cut(s)	370, 785, 3378
Cfr10I	RCCGGY	1 cut(s)	3113
Cfr13I	GGNCC	6 cut(s)	109, 744, 1202, 3146, 3209, 3249
CseI	GACGC	2 cut(s)	80, 331
Csp6I	GTAC	9 cut(s)	19, 498, 661, 1001, 1068, 1656, 2057, 2275, 3215
CspAI	ACCGGT	1 cut(s)	3113
CspCI	CAANNNNNGTGG	2 cut(s)	2620, 2655
CviQI	GTAC	9 cut(s)	19, 498, 661, 1001, 1068, 1656, 2057, 2275, 3215
DinI	GGCGCC	1 cut(s)	369
DraIII	CACNNNGTG	1 cut(s)	2687
DriI	GACNNNNNGTC	1 cut(s)	2952
EaeI	YGGCCR	2 cut(s)	690, 3504
Eam1104I	CTCTTC	6 cut(s)	3, 18, 96, 638, 795, 2010
Eam1105I	GACNNNNNGTC	1 cut(s)	2952
EarI	CTCTTC	6 cut(s)	3, 18, 96, 638, 795, 2010
Eco130I	CCWWGG	8 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3304, 3507
Eco24I	GRGCYC	1 cut(s)	838
Eco31I	GGTCTC	4 cut(s)	1079, 1346, 2015, 3086
Eco32I	GATATC	3 cut(s)	190, 1825, 3074
Eco47I	GGWCC	3 cut(s)	744, 3209, 3249
Eco47III	AGCGCT	1 cut(s)	3377
Eco57I	CTGAAG	5 cut(s)	1575, 1824, 1974, 2031, 2311
Eco72I	CACGTG	1 cut(s)	3200
Eco81I	CCTNAGG	1 cut(s)	2076
Eco91I	GGTNACC	1 cut(s)	224
EcoO109I	RGGNCCY	2 cut(s)	109, 3209
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	2 cut(s)	2799, 3412
EcoRII	CCWGG	8 cut(s)	74, 111, 740, 924, 1584, 2388, 2587, 2594
EcoRV	GATATC	3 cut(s)	190, 1825, 3074
EcoT14I	CCWWGG	8 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3304, 3507
EcoT22I	ATGCAT	2 cut(s)	1438, 1933
EcoT38I	GRGCYC	1 cut(s)	838
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
ErhI	CCWWGG	8 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3304, 3507
Esp3I	CGTCTC	1 cut(s)	308
FalI	AAGNNNNNCTT	2 cut(s)	1476, 1508
FaqI	GGGAC	5 cut(s)	1405, 2500, 2860, 3235, 3258
FauI	CCCGC	2 cut(s)	1779, 3075
FauNDI	CATATG	3 cut(s)	875, 1432, 3174
FbaI	TGATCA	3 cut(s)	2164, 2689, 3340
FblI	GTMKAC	3 cut(s)	174, 1599, 2864
FokI	GGATG	9 cut(s)	134, 395, 1265, 1423, 1805, 2480, 2624, 3041, 3551
FriOI	GRGCYC	1 cut(s)	838
FspBI	CTAG	2 cut(s)	965, 3228
GlaI	GCGC	3 cut(s)	369, 784, 3377
GsaI	CCCAGC	4 cut(s)	539, 717, 1392, 1729
GsuI	CTGGAG	1 cut(s)	1422
HaeII	RGCGCY	2 cut(s)	371, 3379
HaeIII	GGCC	6 cut(s)	92, 111, 692, 1203, 3147, 3506
HapII	CCGG	9 cut(s)	14, 221, 768, 832, 1504, 2343, 2440, 2645, 3114
HgaI	GACGC	2 cut(s)	80, 331
HhaI	GCGC	3 cut(s)	370, 785, 3378
Hin1I	GRCGYC	3 cut(s)	72, 368, 2512
Hin6I	GCGC	3 cut(s)	368, 783, 3376
HinP1I	GCGC	3 cut(s)	368, 783, 3376
HincII	GTYRAC	3 cut(s)	175, 1245, 1300
HindII	GTYRAC	3 cut(s)	175, 1245, 1300
HindIII	AAGCTT	3 cut(s)	1216, 1775, 2701
HpaI	GTTAAC	2 cut(s)	1245, 1300
HpaII	CCGG	9 cut(s)	14, 221, 768, 832, 1504, 2343, 2440, 2645, 3114
Hpy99I	CGWCG	7 cut(s)	44, 47, 50, 176, 179, 325, 2688
HpyCH4IV	ACGT	8 cut(s)	627, 1296, 2182, 2512, 2674, 2683, 2861, 3199
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308, 3432
HpySE526I	ACGT	8 cut(s)	627, 1296, 2182, 2512, 2674, 2683, 2861, 3199
Hsp92I	GRCGYC	3 cut(s)	72, 368, 2512
HspAI	GCGC	3 cut(s)	368, 783, 3376
KasI	GGCGCC	1 cut(s)	367
Kpn2I	TCCGGA	2 cut(s)	767, 2644
Ksp22I	TGATCA	3 cut(s)	2164, 2689, 3340
KspAI	GTTAAC	2 cut(s)	1245, 1300
LguI	GCTCTTC	2 cut(s)	3, 18
LmnI	GCTCC	8 cut(s)	486, 755, 868, 907, 2314, 2462, 2647, 3569
LweI	GCATC	4 cut(s)	1445, 2326, 3001, 3340
MaeI	CTAG	2 cut(s)	965, 3228
MaeII	ACGT	8 cut(s)	627, 1296, 2182, 2512, 2674, 2683, 2861, 3199
MaeIII	GTNAC	9 cut(s)	224, 427, 2230, 2296, 2442, 2675, 2899, 3031, 3107
MbiI	CCGCTC	1 cut(s)	2457
MflI	RGATCY	3 cut(s)	1192, 2549, 3189
MhlI	GDGCHC	4 cut(s)	620, 838, 873, 1141
MlsI	TGGCCA	1 cut(s)	3506
MluNI	TGGCCA	1 cut(s)	3506
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	6 cut(s)	125, 311, 430, 704, 2482, 2907
MmeI	TCCRAC	3 cut(s)	223, 285, 1127
Mox20I	TGGCCA	1 cut(s)	3506
Mph1103I	ATGCAT	2 cut(s)	1438, 1933
MroI	TCCGGA	2 cut(s)	767, 2644
MroXI	GAANNNNTTC	2 cut(s)	1053, 3416
MscI	TGGCCA	1 cut(s)	3506
MseI	TTAA	9 cut(s)	639, 1244, 1299, 1418, 1716, 2046, 2349, 3324, 3386
MslI	CAYNNNNRTG	7 cut(s)	417, 630, 1607, 3066, 3198, 3369, 3421
Msp20I	TGGCCA	1 cut(s)	3506
MspA1I	CMGCKG	3 cut(s)	995, 1388, 1619
MspI	CCGG	9 cut(s)	14, 221, 768, 832, 1504, 2343, 2440, 2645, 3114
Mva1269I	GAATGC	1 cut(s)	3531
MvaI	CCWGG	8 cut(s)	76, 113, 742, 926, 1586, 2390, 2589, 2596
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	8 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308, 3432
NarI	GGCGCC	1 cut(s)	368
NciI	CCSGG	3 cut(s)	222, 833, 1504
NcoI	CCATGG	5 cut(s)	2202, 2310, 2882, 3304, 3507
NdeI	CATATG	3 cut(s)	875, 1432, 3174
NlaIV	GGNNCC	7 cut(s)	369, 471, 1204, 2593, 3210, 3251, 3571
NmeAIII	GCCGAG	3 cut(s)	344, 718, 819
NmuCI	GTSAC	8 cut(s)	224, 427, 2230, 2296, 2442, 2899, 3031, 3107
NsiI	ATGCAT	2 cut(s)	1438, 1933
NspI	RCATGY	3 cut(s)	1064, 1569, 2881
NspV	TTCGAA	2 cut(s)	99, 2797
OliI	CACNNNNGTG	1 cut(s)	3066
PaqCI	CACCTGC	1 cut(s)	1402
PciI	ACATGT	1 cut(s)	1060
PciSI	GCTCTTC	2 cut(s)	3, 18
PcsI	WCGNNNNNNNCGW	6 cut(s)	45, 135, 183, 329, 1870, 2680
PctI	GAATGC	1 cut(s)	3531
PdmI	GAANNNNTTC	2 cut(s)	1053, 3416
PfeI	GAWTC	5 cut(s)	206, 949, 2113, 2396, 2410
PflFI	GACNNNGTC	1 cut(s)	301
PflMI	CCANNNNNTGG	2 cut(s)	1064, 2810
PfoI	TCCNGGA	2 cut(s)	740, 2587
PinAI	ACCGGT	1 cut(s)	3113
PleI	GAGTC	6 cut(s)	125, 310, 430, 703, 2482, 2906
PluTI	GGCGCC	1 cut(s)	371
PmaCI	CACGTG	1 cut(s)	3200
PmlI	CACGTG	1 cut(s)	3200
PpsI	GAGTC	6 cut(s)	125, 310, 430, 703, 2482, 2906
Ppu21I	YACGTR	2 cut(s)	2183, 3200
PpuMI	RGGWCCY	1 cut(s)	3209
PscI	ACATGT	1 cut(s)	1060
PshAI	GACNNNNGTC	2 cut(s)	1860, 2492
PshBI	ATTAAT	2 cut(s)	2046, 2349
PsiI	TTATAA	2 cut(s)	401, 2385
Psp5II	RGGWCCY	1 cut(s)	3209
Psp6I	CCWGG	8 cut(s)	74, 111, 740, 924, 1584, 2388, 2587, 2594
PspCI	CACGTG	1 cut(s)	3200
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	4 cut(s)	535, 713, 1388, 1725
PspGI	CCWGG	8 cut(s)	74, 111, 740, 924, 1584, 2388, 2587, 2594
PspN4I	GGNNCC	7 cut(s)	369, 471, 1204, 2593, 3210, 3251, 3571
PspPI	GGNCC	6 cut(s)	109, 744, 1202, 3146, 3209, 3249
PspPPI	RGGWCCY	1 cut(s)	3209
PsuI	RGATCY	3 cut(s)	1192, 2549, 3189
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	3 cut(s)	995, 1388, 1619
RsaI	GTAC	9 cut(s)	20, 499, 662, 1002, 1069, 1657, 2058, 2276, 3216
RsaNI	GTAC	9 cut(s)	19, 498, 661, 1001, 1068, 1656, 2057, 2275, 3215
RseI	CAYNNNNRTG	7 cut(s)	417, 630, 1607, 3066, 3198, 3369, 3421
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	2 cut(s)	3, 18
SaqAI	TTAA	9 cut(s)	639, 1244, 1299, 1418, 1716, 2046, 2349, 3324, 3386
Sau96I	GGNCC	6 cut(s)	109, 744, 1202, 3146, 3209, 3249
SchI	GAGTC	6 cut(s)	125, 311, 430, 704, 2482, 2907
SduI	GDGCHC	4 cut(s)	620, 838, 873, 1141
SfaNI	GCATC	4 cut(s)	1445, 2326, 3001, 3340
SfcI	CTRYAG	3 cut(s)	2461, 2889, 3513
SfoI	GGCGCC	1 cut(s)	369
SfuI	TTCGAA	2 cut(s)	99, 2797
SgrDI	CGTCGACG	1 cut(s)	173
SinI	GGWCC	3 cut(s)	744, 3209, 3249
SmiMI	CAYNNNNRTG	7 cut(s)	417, 630, 1607, 3066, 3198, 3369, 3421
SmlI	CTYRAG	1 cut(s)	3404
SmoI	CTYRAG	1 cut(s)	3404
SspDI	GGCGCC	1 cut(s)	367
SspI	AATATT	2 cut(s)	1349, 3046
SspMI	CTAG	2 cut(s)	965, 3228
StyI	CCWWGG	8 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3304, 3507
TaiI	ACGT	8 cut(s)	630, 1299, 2185, 2515, 2677, 2686, 2864, 3202
TaqII	GACCGA	1 cut(s)	257
TatI	WGTACW	4 cut(s)	497, 2056, 2274, 3214
TauI	GCSGC	4 cut(s)	341, 1786, 2293, 2545
TfiI	GAWTC	5 cut(s)	206, 949, 2113, 2396, 2410
Tru1I	TTAA	9 cut(s)	639, 1244, 1299, 1418, 1716, 2046, 2349, 3324, 3386
Tru9I	TTAA	9 cut(s)	639, 1244, 1299, 1418, 1716, 2046, 2349, 3324, 3386
TscAI	CASTG	7 cut(s)	1342, 1529, 1614, 2014, 2265, 2451, 2719
TseFI	GTSAC	8 cut(s)	224, 427, 2230, 2296, 2442, 2899, 3031, 3107
Tsp45I	GTSAC	8 cut(s)	224, 427, 2230, 2296, 2442, 2899, 3031, 3107
TspDTI	ATGAA	8 cut(s)	136, 559, 1873, 1916, 2423, 3353, 3405, 3452
TspGWI	ACGGA	4 cut(s)	473, 1817, 1868, 3041
TspRI	CASTG	7 cut(s)	1342, 1529, 1614, 2014, 2265, 2451, 2719
Tth111I	GACNNNGTC	1 cut(s)	301
Van91I	CCANNNNNTGG	2 cut(s)	1064, 2810
VneI	GTGCAC	1 cut(s)	1137
VpaK11BI	GGWCC	3 cut(s)	744, 3209, 3249
VspI	ATTAAT	2 cut(s)	2046, 2349
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	3 cut(s)	1064, 1569, 2881
XmiI	GTMKAC	3 cut(s)	174, 1599, 2864
XmnI	GAANNNNTTC	2 cut(s)	1053, 3416
XspI	CTAG	2 cut(s)	965, 3228
ZraI	GACGTC	1 cut(s)	2513
Zsp2I	ATGCAT	2 cut(s)	1438, 1933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.