Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5289073 .. 5291633

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGAAGAGGAGCCGGAGTACGAAGAGCAGTACAACGAGGAGGACGACGAAGATGAGATAACGCAGGAAGACGCGTGGGCTGTGATTTCAGCCTATTTCGAAGAGAAGGGTTTAGTGAGGCAGCAGCTGGACTCGTTTGATGAGTTCATTCAGAACACAATGCAGGAGATTGTCGACGAGGCCGCCGATATCGAAATCCGACCCGAATCGCAGCATAACCCGGGTCACCAGCCCGATTTCGCTGAGACTATATACAAAATCAGCTTCGGTCAGATTTATCTGAGTAAGCCTATGATGACTGAGTCGGATGGTGAGACTGCAACGCTGTTTCCGAAAGCTGCGAGGTTGCGAAACTTGACCTACTCGGCGCCTTTGTATGTGGATGTGACAAAGAGGGTTATAAAGAAAGGACATGATGGTGAAGAAGTTACTGAGACTCAGGATTTCACCAAAGTGTTCATCGGAAAGGTCCCAATTATGCTCCGTTCGAGTTATTGTACATTGTATCAGAATTCGGAGAAAGACTTGACGGAGCTGGGGGAGTGTCCTTATGACCAAGGCGGGTATTTCATTATTAATGGGAGTGAGAAGGTGTTGATTGCTCAGGAGAAGATGAGCACGAACCACGTCTATGTCTTCAAGAAGAGGCAGCCTAATAAGTACGCATATGTTGGGGAGGTACGGTCTATGGCGGAGTCCCAAAACCGACCCCCCAGCACCATGTTCGTTCGTATGCTTTCCCGGACGAGCTCCAAAGGGGGTTCTTCAGGACAATACATTCGTGCTACTCTTCCGTATATTCGATCTGAGATTCCCATTATTATTGTCTTCCGGGCTCTTGGGTTTGTGGCAGACAAAGACATTTTGGAGCACATATGTTATGATTTTTCAGATACGCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTTATTCAGAATCAACAGGTGGCTCTAGATTATATTGGTAAAAGAGGTGCAACAGCTGGGGTACCTAGAGACAAGAGGATAAGGTATGCAAGAGATATTCTTCAAAAGGAAATGCTTCCACATGTTGGTGTCGGGGAGTTTTGTGAGACCAAGAAAGCATATTATTTCGGATACATCATTCACAGGCTTCTACTGTGTGCACTTGGTCGGAGAGCAGAAGATGATAGGGATCATTATGGAAATAAGAGGCTAGATCTTGCTGGCCCCTTACTTGGAAGCTTGTTTAGATCGCTATTCAGGAAGCTGACCAAGGATGTTAAAGGTTATGTTCAGAAGTGCGTTGATAATGGAAAGGATGTCAACCTGCAATTTGCAATTAAAGCAAAAACCATTACCAGTGGTCTCAAATATTCACTTGCTACTGGGAACTGGGGGCAAGCAAATGCAGCTGGGACAAGGGCTGGAGTGTCGCAGGTTTTAAATCGTTTGACATATGCATCTACATTATCACACTTGCGAAGGCTAAATTCTCCCATAGGGCGTGAAGGGAAATTGGCCAAACCCCGGCAGTTGCACAACTCACAGTGGGGAATGATGTGTCCCGCTGAGACACCTGAAGGGCAGGAAAGTATTGTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

526

Amino Acids

59.76

Weight (kDa)

5.93

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	37 - 446	1.3e-79	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	207 - 398	1.1e-55	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	471 - 521	1.6e-17	RNA polymerase Rpb2, domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21710
fragaria_vesca	FvH4_3g09270
malus_domestica	MD05G1313100.v1.1 MD10G1295300.v1.1
prunus_persica	Prupe.4G046700_v2.0.a1
pyrus_communis	pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720
rosa_chinensis	RchiOBHm_Chr5g0008301
rosa_laevigata	RLG00000031560
rosa_multiflora	Rmu_sc0021840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068160
rosa_rugosa	Rorug04G0434800
rosa_samantha	Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600
rosa_wichuraiana	Rw5G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
Acc36I	ACCTGC	2 cut(s)	1311, 1402
Acc65I	GGTACC	1 cut(s)	1000
AccB1I	GGYRCC	2 cut(s)	367, 1000
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	74
AciI	CCGC	4 cut(s)	183, 561, 692, 1542
AclWI	GGATC	1 cut(s)	1176
AcoI	YGGCCR	1 cut(s)	1494
AcsI	RAATTY	2 cut(s)	511, 1465
AcuI	CTGAAG	2 cut(s)	750, 1575
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	7 cut(s)	20, 32, 499, 662, 681, 1002, 1575
AfiI	CCNNNNNNNGG	3 cut(s)	1064, 1211, 1503
AflIII	ACRYGT	2 cut(s)	72, 1060
AgsI	TTSAA	2 cut(s)	640, 1043
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	924
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	9 cut(s)	127, 264, 338, 535, 750, 995, 1218, 1243, 1388
AluI	AGCT	9 cut(s)	127, 264, 338, 535, 750, 995, 1218, 1243, 1388
Alw21I	GWGCWC	4 cut(s)	620, 752, 873, 1141
Alw26I	GTCTC	7 cut(s)	239, 308, 428, 1002, 1079, 1346, 1541
Alw44I	GTGCAC	1 cut(s)	1137
AlwI	GGATC	1 cut(s)	1176
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	3 cut(s)	180, 1201, 1494
ApaLI	GTGCAC	1 cut(s)	1137
ApeKI	GCWGC	6 cut(s)	121, 124, 211, 338, 649, 1385
ApoI	RAATTY	2 cut(s)	511, 1465
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	1053
Asp718I	GGTACC	1 cut(s)	1000
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	469, 1202
AsuC2I	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
AsuHPI	GGTGA	4 cut(s)	218, 323, 431, 439
AsuII	TTCGAA	1 cut(s)	99
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	1141
BalI	TGGCCA	1 cut(s)	1496
BanI	GGYRCC	2 cut(s)	367, 1000
BanII	GRGCYC	2 cut(s)	752, 838
BbsI	GAAGAC	3 cut(s)	75, 628, 820
Bbv12I	GWGCWC	4 cut(s)	620, 752, 873, 1141
BbvI	GCAGC	6 cut(s)	133, 136, 223, 325, 661, 1397
BccI	CCATC	3 cut(s)	302, 410, 898
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	1 cut(s)	926
BciVI	GTATCC	1 cut(s)	1103
BcnI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
BcoDI	GTCTC	7 cut(s)	239, 308, 428, 1002, 1079, 1346, 1541
BfaI	CTAG	3 cut(s)	965, 1005, 1190
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	2 cut(s)	1311, 1402
BfuI	GTATCC	1 cut(s)	1103
BglII	AGATCT	1 cut(s)	1192
BisI	GCNGC	7 cut(s)	122, 125, 183, 212, 339, 650, 1386
BlsI	GCNGC	7 cut(s)	123, 126, 184, 213, 340, 651, 1387
Bme1390I	CCNGG	6 cut(s)	221, 222, 742, 833, 926, 1504
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	469, 1202
BmiI	GGNNCC	5 cut(s)	12, 369, 471, 1002, 1204
BmrFI	CCNGG	6 cut(s)	221, 222, 742, 833, 926, 1504
BmrI	ACTGGG	2 cut(s)	1371, 1378
BmsI	GCATC	1 cut(s)	1445
BmuI	ACTGGG	2 cut(s)	1371, 1378
BpiI	GAAGAC	3 cut(s)	75, 628, 820
BpmI	CTGGAG	1 cut(s)	1422
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	99
BpuMI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	2 cut(s)	1079, 1346
BsaJI	CCNNGG	5 cut(s)	220, 556, 924, 1248, 1502
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	1064, 1211, 1503
Bse1I	ACTGG	3 cut(s)	1335, 1366, 1373
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	1 cut(s)	926
BseDI	CCNNGG	5 cut(s)	220, 556, 924, 1248, 1502
BseGI	GGATG	4 cut(s)	313, 388, 1258, 1300
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	3 cut(s)	1064, 1211, 1503
BseMII	CTCAG	8 cut(s)	234, 272, 291, 423, 452, 617, 798, 1536
BseNI	ACTGG	3 cut(s)	1335, 1366, 1373
BseRI	GAGGAG	2 cut(s)	23, 53
BseSI	GKGCMC	1 cut(s)	1141
BseXI	GCAGC	6 cut(s)	133, 136, 223, 325, 661, 1397
BseYI	CCCAGC	4 cut(s)	535, 713, 995, 1388
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	182, 1203, 1496
BshNI	GGYRCC	2 cut(s)	367, 1000
BsiHKAI	GWGCWC	4 cut(s)	620, 752, 873, 1141
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	5 cut(s)	14, 221, 742, 832, 1504
BslFI	GGGAC	4 cut(s)	455, 682, 1405, 1524
BslI	CCNNNNNNNGG	3 cut(s)	1064, 1211, 1503
BsmAI	GTCTC	7 cut(s)	239, 308, 428, 1002, 1079, 1346, 1541
BsmFI	GGGAC	4 cut(s)	455, 682, 1405, 1524
BsnI	GGCC	3 cut(s)	182, 1203, 1496
Bso31I	GGTCTC	2 cut(s)	1079, 1346
BsoBI	CYCGRG	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	5 cut(s)	620, 752, 838, 873, 1141
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	4 cut(s)	803, 1168, 1192, 1226
BspACI	CCGC	4 cut(s)	183, 561, 692, 1542
BspANI	GGCC	3 cut(s)	182, 1203, 1496
BspCNI	CTCAG	8 cut(s)	235, 273, 292, 424, 451, 616, 799, 1537
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	5 cut(s)	12, 369, 471, 1002, 1204
BspMI	ACCTGC	2 cut(s)	1311, 1402
BspPI	GGATC	1 cut(s)	1176
BspQI	GCTCTTC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	367, 1000
BspTNI	GGTCTC	2 cut(s)	1079, 1346
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	3 cut(s)	1335, 1366, 1373
BssECI	CCNNGG	5 cut(s)	220, 556, 924, 1248, 1502
BssMI	GATC	4 cut(s)	803, 1168, 1192, 1226
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	556, 1248
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	3 cut(s)	684, 1134, 1524
Bst6I	CTCTTC	4 cut(s)	18, 96, 638, 795
BstACI	GRCGYC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	1201, 1377
BstDEI	CTNAG	8 cut(s)	243, 281, 300, 432, 438, 603, 807, 1545
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	313, 388, 1258, 1300
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	806, 1171, 1195, 1229
BstMAI	GTCTC	7 cut(s)	239, 308, 428, 1002, 1079, 1346, 1541
BstMBI	GATC	4 cut(s)	803, 1168, 1192, 1226
BstMWI	GCNNNNNNNGC	2 cut(s)	1319, 1385
BstNI	CCWGG	1 cut(s)	926
BstNSI	RCATGY	1 cut(s)	1064
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	6 cut(s)	219, 220, 740, 831, 924, 1502
BstSLI	GKGCMC	1 cut(s)	1141
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	6 cut(s)	133, 136, 223, 325, 661, 1397
BstV2I	GAAGAC	3 cut(s)	75, 628, 820
BstX2I	RGATCY	1 cut(s)	1192
BstYI	RGATCY	1 cut(s)	1192
BsuI	GTATCC	1 cut(s)	1103
BsuRI	GGCC	3 cut(s)	182, 1203, 1496
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	4 cut(s)	313, 388, 1258, 1300
BtsIMutI	CAGTG	2 cut(s)	1342, 1529
BveI	ACCTGC	2 cut(s)	1311, 1402
Cac8I	GCNNGC	2 cut(s)	1201, 1377
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	469, 1202
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	7 cut(s)	19, 31, 498, 661, 680, 1001, 1574
CviAII	CATG	3 cut(s)	413, 721, 1061
CviQI	GTAC	7 cut(s)	19, 31, 498, 661, 680, 1001, 1574
DdeI	CTNAG	8 cut(s)	243, 281, 300, 432, 438, 603, 807, 1545
DinI	GGCGCC	1 cut(s)	369
DpnI	GATC	4 cut(s)	805, 1170, 1194, 1228
DpnII	GATC	4 cut(s)	803, 1168, 1192, 1226
DraI	TTTAAA	1 cut(s)	1419
EaeI	YGGCCR	1 cut(s)	1494
Eam1104I	CTCTTC	4 cut(s)	18, 96, 638, 795
EarI	CTCTTC	4 cut(s)	18, 96, 638, 795
EciI	GGCGGA	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	2 cut(s)	556, 1248
Eco24I	GRGCYC	2 cut(s)	752, 838
Eco31I	GGTCTC	2 cut(s)	1079, 1346
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	2 cut(s)	750, 1575
Eco88I	CYCGRG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	469
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	924
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	556, 1248
EcoT22I	ATGCAT	1 cut(s)	1438
EcoT38I	GRGCYC	2 cut(s)	752, 838
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	556, 1248
FaeI	CATG	3 cut(s)	416, 724, 1064
FaqI	GGGAC	4 cut(s)	455, 682, 1405, 1524
FatI	CATG	3 cut(s)	412, 720, 1060
FauI	CCCGC	2 cut(s)	554, 1549
FauNDI	CATATG	3 cut(s)	667, 875, 1432
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	7 cut(s)	122, 125, 183, 212, 339, 650, 1386
FokI	GGATG	4 cut(s)	320, 395, 1265, 1307
FriOI	GRGCYC	2 cut(s)	752, 838
Fsp4HI	GCNGC	7 cut(s)	122, 125, 183, 212, 339, 650, 1386
FspBI	CTAG	3 cut(s)	965, 1005, 1190
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	7 cut(s)	122, 125, 183, 212, 339, 650, 1386
GsaI	CCCAGC	4 cut(s)	539, 717, 999, 1392
GsuI	CTGGAG	1 cut(s)	1422
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	182, 1203, 1496
HapII	CCGG	5 cut(s)	14, 221, 742, 832, 1504
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	416, 724, 1064
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	2 cut(s)	175, 1300
HindII	GTYRAC	2 cut(s)	175, 1300
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	7 cut(s)	131, 206, 302, 436, 695, 811, 949
HpaII	CCGG	5 cut(s)	14, 221, 742, 832, 1504
HphI	GGTGA	4 cut(s)	218, 323, 431, 439
Hpy166II	GTNNAC	3 cut(s)	175, 1139, 1300
Hpy188III	TCNNGA	6 cut(s)	440, 605, 640, 768, 965, 1237
Hpy8I	GTNNAC	3 cut(s)	175, 1139, 1300
Hpy99I	CGWCG	2 cut(s)	50, 179
HpyAV	CCTTC	6 cut(s)	100, 583, 930, 1452, 1478, 1550
HpyCH4III	ACNGT	3 cut(s)	684, 1134, 1524
HpyCH4IV	ACGT	1 cut(s)	627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1319, 1385
HpyF3I	CTNAG	8 cut(s)	243, 281, 300, 432, 438, 603, 807, 1545
HpySE526I	ACGT	1 cut(s)	627
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	416, 724, 1064
HspAI	GCGC	1 cut(s)	368
KasI	GGCGCC	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	1004
Kzo9I	GATC	4 cut(s)	803, 1168, 1192, 1226
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	5 cut(s)	10, 486, 532, 755, 868
Lsp1109I	GCAGC	6 cut(s)	133, 136, 223, 325, 661, 1397
LweI	GCATC	1 cut(s)	1445
MaeI	CTAG	3 cut(s)	965, 1005, 1190
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	3 cut(s)	224, 385, 427
MalI	GATC	4 cut(s)	805, 1170, 1194, 1228
MboI	GATC	4 cut(s)	803, 1168, 1192, 1226
MflI	RGATCY	1 cut(s)	1192
MhlI	GDGCHC	5 cut(s)	620, 752, 838, 873, 1141
MlsI	TGGCCA	1 cut(s)	1496
MluCI	AATT	6 cut(s)	474, 511, 1307, 1314, 1465, 1490
MluI	ACGCGT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	1496
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	4 cut(s)	125, 311, 430, 704
MmeI	TCCRAC	3 cut(s)	223, 285, 1127
Mox20I	TGGCCA	1 cut(s)	1496
Mph1103I	ATGCAT	1 cut(s)	1438
MroXI	GAANNNNTTC	1 cut(s)	1053
MscI	TGGCCA	1 cut(s)	1496
MseI	TTAA	5 cut(s)	576, 1257, 1317, 1418, 1579
MslI	CAYNNNNRTG	4 cut(s)	417, 452, 630, 1065
Msp20I	TGGCCA	1 cut(s)	1496
MspA1I	CMGCKG	4 cut(s)	127, 995, 1388, 1544
MspI	CCGG	5 cut(s)	14, 221, 742, 832, 1504
MspR9I	CCNGG	6 cut(s)	221, 222, 742, 833, 926, 1504
MvaI	CCWGG	1 cut(s)	926
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	1319, 1385
NarI	GGCGCC	1 cut(s)	368
NciI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
NdeI	CATATG	3 cut(s)	667, 875, 1432
NdeII	GATC	4 cut(s)	803, 1168, 1192, 1226
NlaIII	CATG	3 cut(s)	416, 724, 1064
NlaIV	GGNNCC	5 cut(s)	12, 369, 471, 1002, 1204
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	224, 385
NsiI	ATGCAT	1 cut(s)	1438
NspI	RCATGY	1 cut(s)	1064
NspV	TTCGAA	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	452
PciI	ACATGT	1 cut(s)	1060
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 183, 329
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	3 cut(s)	206, 811, 949
PflFI	GACNNNGTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	1064
PfoI	TCCNGGA	1 cut(s)	740
PkrI	GCNGC	7 cut(s)	123, 126, 184, 213, 340, 651, 1387
PleI	GAGTC	4 cut(s)	125, 310, 430, 703
PluTI	GGCGCC	1 cut(s)	371
PpsI	GAGTC	4 cut(s)	125, 310, 430, 703
PpuMI	RGGWCCY	1 cut(s)	469
PscI	ACATGT	1 cut(s)	1060
PshBI	ATTAAT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	924
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	4 cut(s)	535, 713, 995, 1388
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	5 cut(s)	12, 369, 471, 1002, 1204
PspPI	GGNCC	2 cut(s)	469, 1202
PspPPI	RGGWCCY	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	1192
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	3 cut(s)	127, 995, 1388
RsaI	GTAC	7 cut(s)	20, 32, 499, 662, 681, 1002, 1575
RsaNI	GTAC	7 cut(s)	19, 31, 498, 661, 680, 1001, 1574
RseI	CAYNNNNRTG	4 cut(s)	417, 452, 630, 1065
SacI	GAGCTC	1 cut(s)	752
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	5 cut(s)	576, 1257, 1317, 1418, 1579
SatI	GCNGC	7 cut(s)	122, 125, 183, 212, 339, 650, 1386
Sau3AI	GATC	4 cut(s)	803, 1168, 1192, 1226
Sau96I	GGNCC	2 cut(s)	469, 1202
SchI	GAGTC	4 cut(s)	125, 311, 430, 704
ScrFI	CCNGG	6 cut(s)	221, 222, 742, 833, 926, 1504
SduI	GDGCHC	5 cut(s)	620, 752, 838, 873, 1141
SfaNI	GCATC	1 cut(s)	1445
SfoI	GGCGCC	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	99
SinI	GGWCC	1 cut(s)	469
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	4 cut(s)	417, 452, 630, 1065
Sse9I	AATT	6 cut(s)	474, 511, 1307, 1314, 1465, 1490
SsiI	CCGC	4 cut(s)	183, 561, 692, 1542
SspDI	GGCGCC	1 cut(s)	367
SspI	AATATT	1 cut(s)	1349
SspMI	CTAG	3 cut(s)	965, 1005, 1190
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	6 cut(s)	219, 220, 740, 831, 924, 1502
StyI	CCWWGG	2 cut(s)	556, 1248
TaaI	ACNGT	3 cut(s)	684, 1134, 1524
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	5 cut(s)	99, 174, 192, 488, 802
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	6 cut(s)	474, 511, 1307, 1314, 1465, 1490
TatI	WGTACW	3 cut(s)	30, 497, 1573
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	206, 811, 949
Tru1I	TTAA	5 cut(s)	576, 1257, 1317, 1418, 1579
Tru9I	TTAA	5 cut(s)	576, 1257, 1317, 1418, 1579
TscAI	CASTG	2 cut(s)	1342, 1529
TseFI	GTSAC	2 cut(s)	224, 385
TseI	GCWGC	6 cut(s)	121, 124, 211, 338, 649, 1385
Tsp45I	GTSAC	2 cut(s)	224, 385
TspDTI	ATGAA	3 cut(s)	136, 448, 559
TspGWI	ACGGA	3 cut(s)	473, 545, 783
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	2 cut(s)	1342, 1529
Tth111I	GACNNNGTC	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	1064
VneI	GTGCAC	1 cut(s)	1137
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	2 cut(s)	511, 1465
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	1 cut(s)	1064
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	3 cut(s)	965, 1005, 1190
Zsp2I	ATGCAT	1 cut(s)	1438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.