Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5285388 .. 5288977

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG070400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGGTCTACATAACTGTGGGATCAGCTGCATATCCAATCTTAGAATTTTTAGAAGAATGGGGTACAGAAAATTTTGAGGAAATTTCCCCTGCTGTTATTCCCCAAGCCACAAAGATTTTTGTTAATGGCTGCTGGGTTGGCATACATCGTGATCCTGAAATGTTGGTGAGAACATTAAGGAAGCTAAGGCGGCGGGTGGATGTCAATACTGAAGTTGGGGTTGTAAGAGATATCCGTCTGAAAGAATTGCGGATATATACTGATTATGGTCGTTGCAGTCGTCCATTATTCATTGTGGACAAGCAAAGGCTGCTTATAAAGAAGAAAGATATTCATGCATTGCAGCAGAGGGAAAACCCTGAAGACGGTGGTTGGCATGATCTCGTGGCAAAAGGATTTATAGAATATATTGACACTGAAGAAGAGGAGACCACTATGATTTCGATGACAATTAATGATCTTGTACAAGCAAGGCTCAATCCTGAGGAGGCATATTCTGACACTTACACTCATTGTGAAATTCACCCATCACTTATATTGGGTGTTTGTGCTTCAATTATACCATTTCCTGATCATAATCAGTCTCCACGTAATACATATCAATCTGCCATGGGAAAGCAAGCTATGGGAATTTATGTCACCAATTATCAGTTCCGAATGGATACACTGGCTTATGTTCTGTACTACCCTCAGAAGCCGCTTGTCACTACACGAGCCATGGAGCATCTTCACTTCCGGCAACTTCCAGCTGGAATTAATGCCATTGTTGCCATTTCTTGCTACTCTGGTTATAATCAGGAAGATTCTGTCATTATGAATCAATCCTCTATAGATCGTGGATTTTTCCGGTCACTGTTCTTCCGCTCCTATAGGGATGAGGAAAAAAAGATGGGGACCCTTGTCAAAGAAGATTTTGGACGTCCAGACAGAGCAAATACGATGGGTATGCGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCACCTCCTGGAACCAGGGTTTCAGGCGAGGATGTTATCATAGGGAAGACCACTCCCATTGCTCCAGAGGAGGCTCAGGGGCAAGCTGCTTCACGTTACTCACGACGTGACCATAGTATAAGCTTACGGCACAGTGAAACTGGGATTGTGGACCAGGTTTTATTGACTACCAATGCCGATGGGCTGAGGTTTGTGAAAGTGAGGGTGAGGTCTGTTCGAATTCCACAGATTGGGGATAAATTTAGCAGTAGGCATGGACAGAAAGGGACGGTGGGTATGACATATACACAAGAAGACATGCCGTGGACTGTAGAAGGAGTCACCCCTGATATTATTGTGAACCCTCATGCTATTCCTTCCCGAATGACCATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTTGCAGCACACATGGGAAAGGAAGGAGATGCTACTCCCTTTACGGATGTGACTGTGGACAATATTAGCAAAGCTCTTCACAAATGTGGGTATCAAATGCGGGGATTTGAGACCATGTATAATGGTCACACTGGTCGGCGACTGAGTGCAATGATATTCCTTGGCCCTACATATTACCAGAGATTGAAGCATATGGTTGATGATAAGATCCATTCACGTGGTCGGGGTCCTGTACAGATCCTCACAAGGCAGCCTGCTGAGGGACGGTCTCGTGATGGTGGTTTACGATTTGGAGAGATGGAACGAGATTGCATGATTGCCCACGGTGCTGCTCACTTTCTGAAAGAGAGATTGTTTGATCAGAGTGATGCCTATAGGGTTCATGTCTGCGAGCGTTGTGGTTTAATAGCTATTGCAAATCTCAAGAAGAATTCATTCGAGTGCAGAGGTTGTAAGAACAAAACTGATATTGTTCAGGTTCACATTCCTTATGCCTGCAAGCTGCTATTCCAAGAGCTTATGGCCATGGCTATAGCACCAAGAATGCTCACAAAGGATGTCAAGCCTATCAAAGAAAAGAAGAAAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

660

Amino Acids

74.85

Weight (kDa)

8.6

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_4	PF04566	39 - 100	4.1e-24	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	125 - 176	3.2e-18	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	183 - 554	1.3e-142	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	556 - 647	7.3e-36	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21710
fragaria_vesca	FvH4_3g09270
malus_domestica	MD05G1313100.v1.1 MD10G1295300.v1.1
prunus_persica	Prupe.4G046700_v2.0.a1
pyrus_communis	pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720
rosa_chinensis	RchiOBHm_Chr5g0008301
rosa_laevigata	RLG00000031560
rosa_multiflora	Rmu_sc0021840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068160
rosa_rugosa	Rorug04G0434800
rosa_samantha	Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600
rosa_wichuraiana	Rw5G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	317, 792
AatII	GACGTC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	1217
AccBSI	CCGCTC	1 cut(s)	864
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	7 cut(s)	190, 193, 250, 698, 862, 949, 1489
AclWI	GGATC	4 cut(s)	28, 146, 1591, 1621
AcoI	YGGCCR	1 cut(s)	1911
AcsI	RAATTY	8 cut(s)	44, 70, 81, 519, 630, 1206, 1226, 1819
AcuI	CTGAAG	3 cut(s)	231, 381, 438
AcvI	CACGTG	1 cut(s)	1607
AcyI	GRCGYC	1 cut(s)	919
AdeI	CACNNNGTG	1 cut(s)	1094
AfaI	GTAC	4 cut(s)	64, 465, 683, 1623
AfiI	CCNNNNNNNGG	3 cut(s)	365, 1217, 1649
AgsI	TTSAA	2 cut(s)	555, 1576
AhdI	GACNNNNNGTC	1 cut(s)	1359
AjiI	CACGTC	1 cut(s)	1094
AjnI	CCWGG	3 cut(s)	994, 1001, 1140
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AleI	CACNNNNGTG	1 cut(s)	1473
Alw26I	GTCTC	4 cut(s)	422, 588, 1493, 1662
AlwI	GGATC	4 cut(s)	28, 146, 1591, 1621
AoxI	GGCC	2 cut(s)	1552, 1911
ApeKI	GCWGC	9 cut(s)	26, 129, 310, 343, 1073, 1394, 1639, 1718, 1891
ApoI	RAATTY	8 cut(s)	44, 70, 81, 519, 630, 1206, 1226, 1819
AseI	ATTAAT	2 cut(s)	453, 756
Asp700I	GAANNNNTTC	1 cut(s)	1823
AspS9I	GGNCC	4 cut(s)	894, 1138, 1553, 1616
AsuHPI	GGTGA	5 cut(s)	178, 515, 631, 1204, 1300
AsuII	TTCGAA	1 cut(s)	1204
AvaII	GGWCC	3 cut(s)	894, 1138, 1616
AxyI	CCTNAGG	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	1913
BauI	CACGAG	3 cut(s)	383, 711, 1659
BbrPI	CACGTG	1 cut(s)	1607
BbsI	GAAGAC	3 cut(s)	369, 1040, 1287
BbvCI	CCTCAGC	2 cut(s)	1172, 1647
BbvI	GCAGC	9 cut(s)	13, 116, 297, 355, 1060, 1406, 1651, 1705, 1878
BccI	CCATC	7 cut(s)	535, 883, 934, 974, 1160, 1658, 1681
BceAI	ACGGC	2 cut(s)	1130, 1273
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciT130I	CCWGG	3 cut(s)	996, 1003, 1142
BciVI	GTATCC	1 cut(s)	655
BclI	TGATCA	2 cut(s)	571, 1747
BcoDI	GTCTC	4 cut(s)	422, 588, 1493, 1662
BfmI	CTRYAG	5 cut(s)	828, 868, 1296, 1762, 1920
BfuI	GTATCC	1 cut(s)	655
Bme1390I	CCNGG	3 cut(s)	996, 1003, 1142
Bme18I	GGWCC	3 cut(s)	894, 1138, 1616
BmeRI	GACNNNNNGTC	1 cut(s)	1359
BmgBI	CACGTC	1 cut(s)	1094
BmgT120I	GGNCC	4 cut(s)	894, 1138, 1553, 1616
BmiI	GGNNCC	5 cut(s)	895, 896, 1000, 1617, 1978
BmrFI	CCNGG	3 cut(s)	996, 1003, 1142
BmrI	ACTGGG	1 cut(s)	1137
BmsI	GCATC	3 cut(s)	733, 1408, 1747
BmuI	ACTGGG	1 cut(s)	1137
BoxI	GACNNNNGTC	1 cut(s)	899
BpiI	GAAGAC	3 cut(s)	369, 1040, 1287
BpmI	CTGGAG	1 cut(s)	1035
Bpu10I	CCTNAGC	4 cut(s)	185, 1062, 1172, 1647
Bpu14I	TTCGAA	1 cut(s)	1204
BpuEI	CTTGAG	1 cut(s)	1796
BsaAI	YACGTR	2 cut(s)	590, 1607
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	919
BsaI	GGTCTC	3 cut(s)	422, 1493, 1662
BsaJI	CCNNGG	7 cut(s)	609, 717, 1002, 1289, 1549, 1711, 1914
BsaWI	WCCGGW	1 cut(s)	846
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 1217, 1649
Bse1I	ACTGG	3 cut(s)	672, 1132, 1525
Bse21I	CCTNAGG	1 cut(s)	483
Bse3DI	GCAATG	3 cut(s)	338, 1044, 1545
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	996, 1003, 1142
BseDI	CCNNGG	7 cut(s)	609, 717, 1002, 1289, 1549, 1711, 1914
BseGI	GGATG	6 cut(s)	205, 880, 979, 1024, 1441, 1951
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	365, 1217, 1649
BseMI	GCAATG	3 cut(s)	338, 1044, 1545
BseMII	CTCAG	6 cut(s)	474, 704, 1076, 1163, 1523, 1638
BseNI	ACTGG	3 cut(s)	672, 1132, 1525
BseRI	GAGGAG	3 cut(s)	440, 500, 1070
BseXI	GCAGC	9 cut(s)	13, 116, 297, 355, 1060, 1406, 1651, 1705, 1878
BseYI	CCCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	1852
BshFI	GGCC	2 cut(s)	1554, 1913
BsiSI	CCGG	2 cut(s)	736, 847
BslFI	GGGAC	3 cut(s)	907, 1267, 1665
BslI	CCNNNNNNNGG	3 cut(s)	365, 1217, 1649
BsmAI	GTCTC	4 cut(s)	422, 588, 1493, 1662
BsmFI	GGGAC	3 cut(s)	907, 1267, 1665
BsmI	GAATGC	1 cut(s)	1938
BsnI	GGCC	2 cut(s)	1554, 1913
Bso31I	GGTCTC	3 cut(s)	422, 1493, 1662
Bsp119I	TTCGAA	1 cut(s)	1204
Bsp1407I	TGTACA	2 cut(s)	463, 1621
Bsp143I	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
Bsp19I	CCATGG	3 cut(s)	609, 717, 1914
BspACI	CCGC	7 cut(s)	190, 193, 250, 698, 862, 949, 1489
BspANI	GGCC	2 cut(s)	1554, 1913
BspCNI	CTCAG	6 cut(s)	475, 703, 1075, 1164, 1524, 1639
BspLI	GGNNCC	5 cut(s)	895, 896, 1000, 1617, 1978
BspPI	GGATC	4 cut(s)	28, 146, 1591, 1621
BspQI	GCTCTTC	1 cut(s)	1470
BspT104I	TTCGAA	1 cut(s)	1204
BspTNI	GGTCTC	3 cut(s)	422, 1493, 1662
BsrBI	CCGCTC	1 cut(s)	864
BsrDI	GCAATG	3 cut(s)	338, 1044, 1545
BsrGI	TGTACA	2 cut(s)	463, 1621
BsrI	ACTGG	3 cut(s)	672, 1132, 1525
BssECI	CCNNGG	7 cut(s)	609, 717, 1002, 1289, 1549, 1711, 1914
BssMI	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
BssNI	GRCGYC	1 cut(s)	919
BssSI	CACGAG	3 cut(s)	383, 711, 1659
BssT1I	CCWWGG	4 cut(s)	609, 717, 1549, 1914
Bst2BI	CACGAG	3 cut(s)	383, 711, 1659
Bst2UI	CCWGG	3 cut(s)	996, 1003, 1142
Bst4CI	ACNGT	9 cut(s)	16, 368, 855, 1121, 1258, 1297, 1444, 1656, 1715
Bst6I	CTCTTC	2 cut(s)	417, 1470
BstACI	GRCGYC	1 cut(s)	919
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstAUI	TGTACA	2 cut(s)	463, 1621
BstBAI	YACGTR	2 cut(s)	590, 1607
BstBI	TTCGAA	1 cut(s)	1204
BstC8I	GCNNGC	6 cut(s)	621, 1071, 1644, 1781, 1885, 1889
BstDEI	CTNAG	8 cut(s)	40, 185, 483, 690, 1062, 1172, 1532, 1647
BstDSI	CCRYGG	5 cut(s)	609, 717, 1289, 1711, 1914
BstF5I	GGATG	6 cut(s)	205, 880, 979, 1024, 1441, 1951
BstKTI	GATC	9 cut(s)	23, 154, 382, 460, 574, 835, 1599, 1629, 1750
BstMAI	GTCTC	4 cut(s)	422, 588, 1493, 1662
BstMBI	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 190, 310, 767, 1715
BstNI	CCWGG	3 cut(s)	996, 1003, 1142
BstNSI	RCATGY	1 cut(s)	1288
BstPAI	GACNNNNGTC	1 cut(s)	899
BstSCI	CCNGG	3 cut(s)	994, 1001, 1140
BstSFI	CTRYAG	5 cut(s)	828, 868, 1296, 1762, 1920
BstV1I	GCAGC	9 cut(s)	13, 116, 297, 355, 1060, 1406, 1651, 1705, 1878
BstV2I	GAAGAC	3 cut(s)	369, 1040, 1287
BstX2I	RGATCY	2 cut(s)	1596, 1626
BstXI	CCANNNNNNTGG	1 cut(s)	1607
BstYI	RGATCY	2 cut(s)	1596, 1626
Bsu36I	CCTNAGG	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	1554, 1913
BtgI	CCRYGG	5 cut(s)	609, 717, 1289, 1711, 1914
BtrI	CACGTC	1 cut(s)	1094
BtsCI	GGATG	6 cut(s)	205, 880, 979, 1024, 1441, 1951
BtsIMutI	CAGTG	5 cut(s)	414, 665, 851, 1126, 1518
Cac8I	GCNNGC	6 cut(s)	621, 1071, 1644, 1781, 1885, 1889
Cfr13I	GGNCC	4 cut(s)	894, 1138, 1553, 1616
CsiI	ACCWGGT	1 cut(s)	1140
Csp6I	GTAC	4 cut(s)	63, 464, 682, 1622
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
CviQI	GTAC	4 cut(s)	63, 464, 682, 1622
DdeI	CTNAG	8 cut(s)	40, 185, 483, 690, 1062, 1172, 1532, 1647
DpnI	GATC	9 cut(s)	22, 153, 381, 459, 573, 834, 1598, 1628, 1749
DpnII	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
DraIII	CACNNNGTG	1 cut(s)	1094
DriI	GACNNNNNGTC	1 cut(s)	1359
EaeI	YGGCCR	1 cut(s)	1911
Eam1104I	CTCTTC	2 cut(s)	417, 1470
Eam1105I	GACNNNNNGTC	1 cut(s)	1359
EarI	CTCTTC	2 cut(s)	417, 1470
Eco130I	CCWWGG	4 cut(s)	609, 717, 1549, 1914
Eco31I	GGTCTC	3 cut(s)	422, 1493, 1662
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	3 cut(s)	894, 1138, 1616
Eco57I	CTGAAG	3 cut(s)	231, 381, 438
Eco72I	CACGTG	1 cut(s)	1607
Eco81I	CCTNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	2 cut(s)	894, 1616
EcoRI	GAATTC	2 cut(s)	1206, 1819
EcoRII	CCWGG	3 cut(s)	994, 1001, 1140
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	4 cut(s)	609, 717, 1549, 1914
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	4 cut(s)	609, 717, 1549, 1914
FaqI	GGGAC	3 cut(s)	907, 1267, 1665
FauI	CCCGC	2 cut(s)	186, 1482
FauNDI	CATATG	1 cut(s)	1581
FbaI	TGATCA	2 cut(s)	571, 1747
FblI	GTMKAC	1 cut(s)	6
FokI	GGATG	6 cut(s)	212, 887, 986, 1031, 1448, 1958
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	2 cut(s)	1554, 1913
HapII	CCGG	2 cut(s)	736, 847
Hin1I	GRCGYC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	1108
HinfI	GANTC	3 cut(s)	803, 817, 1305
HpaII	CCGG	2 cut(s)	736, 847
HphI	GGTGA	5 cut(s)	178, 515, 631, 1204, 1300
Hpy166II	GTNNAC	8 cut(s)	7, 298, 1138, 1293, 1327, 1447, 1673, 1870
Hpy188I	TCNGA	6 cut(s)	240, 499, 656, 693, 1731, 1752
Hpy8I	GTNNAC	8 cut(s)	7, 298, 1138, 1293, 1327, 1447, 1673, 1870
Hpy99I	CGWCG	1 cut(s)	1095
HpyAV	CCTTC	4 cut(s)	1295, 1353, 1381, 1406
HpyCH4III	ACNGT	9 cut(s)	16, 368, 855, 1121, 1258, 1297, 1444, 1656, 1715
HpyCH4IV	ACGT	5 cut(s)	589, 919, 1081, 1093, 1606
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 190, 310, 767, 1715
HpyF3I	CTNAG	8 cut(s)	40, 185, 483, 690, 1062, 1172, 1532, 1647
HpySE526I	ACGT	5 cut(s)	589, 919, 1081, 1093, 1606
Hsp92I	GRCGYC	1 cut(s)	919
KflI	GGGWCCC	1 cut(s)	894
Ksp22I	TGATCA	2 cut(s)	571, 1747
Kzo9I	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
LguI	GCTCTTC	1 cut(s)	1470
LmnI	GCTCC	4 cut(s)	721, 869, 1054, 1976
Lsp1109I	GCAGC	9 cut(s)	13, 116, 297, 355, 1060, 1406, 1651, 1705, 1878
LweI	GCATC	3 cut(s)	733, 1408, 1747
MabI	ACCWGGT	1 cut(s)	1140
MaeII	ACGT	5 cut(s)	589, 919, 1081, 1093, 1606
MaeIII	GTNAC	8 cut(s)	637, 703, 849, 1082, 1094, 1306, 1438, 1514
MalI	GATC	9 cut(s)	22, 153, 381, 459, 573, 834, 1598, 1628, 1749
MbiI	CCGCTC	1 cut(s)	864
MboI	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
MflI	RGATCY	2 cut(s)	1596, 1626
MlsI	TGGCCA	1 cut(s)	1913
MluNI	TGGCCA	1 cut(s)	1913
MlyI	GAGTC	1 cut(s)	1314
Mox20I	TGGCCA	1 cut(s)	1913
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	1823
MscI	TGGCCA	1 cut(s)	1913
MseI	TTAA	5 cut(s)	123, 176, 453, 756, 1793
MslI	CAYNNNNRTG	4 cut(s)	14, 1473, 1605, 1828
Msp20I	TGGCCA	1 cut(s)	1913
MspA1I	CMGCKG	2 cut(s)	26, 749
MspI	CCGG	2 cut(s)	736, 847
MspR9I	CCNGG	3 cut(s)	996, 1003, 1142
Mva1269I	GAATGC	1 cut(s)	1938
MvaI	CCWGG	3 cut(s)	996, 1003, 1142
MwoI	GCNNNNNNNGC	5 cut(s)	138, 190, 310, 767, 1715
NcoI	CCATGG	3 cut(s)	609, 717, 1914
NdeI	CATATG	1 cut(s)	1581
NdeII	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
NlaIV	GGNNCC	5 cut(s)	895, 896, 1000, 1617, 1978
NmuCI	GTSAC	7 cut(s)	637, 703, 849, 1094, 1306, 1438, 1514
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	1288
NspV	TTCGAA	1 cut(s)	1204
OliI	CACNNNNGTG	1 cut(s)	1473
PciSI	GCTCTTC	1 cut(s)	1470
PcsI	WCGNNNNNNNCGW	2 cut(s)	277, 1087
PctI	GAATGC	1 cut(s)	1938
PdmI	GAANNNNTTC	1 cut(s)	1823
PfeI	GAWTC	2 cut(s)	803, 817
PflMI	CCANNNNNTGG	1 cut(s)	1217
PfoI	TCCNGGA	1 cut(s)	994
PleI	GAGTC	1 cut(s)	1313
PmaCI	CACGTG	1 cut(s)	1607
PmlI	CACGTG	1 cut(s)	1607
PpsI	GAGTC	1 cut(s)	1313
Ppu21I	YACGTR	2 cut(s)	590, 1607
PpuMI	RGGWCCY	2 cut(s)	894, 1616
PshAI	GACNNNNGTC	1 cut(s)	899
PshBI	ATTAAT	2 cut(s)	453, 756
PsiI	TTATAA	2 cut(s)	317, 792
Psp5II	RGGWCCY	2 cut(s)	894, 1616
Psp6I	CCWGG	3 cut(s)	994, 1001, 1140
PspCI	CACGTG	1 cut(s)	1607
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	3 cut(s)	994, 1001, 1140
PspN4I	GGNNCC	5 cut(s)	895, 896, 1000, 1617, 1978
PspPI	GGNCC	4 cut(s)	894, 1138, 1553, 1616
PspPPI	RGGWCCY	2 cut(s)	894, 1616
PsuI	RGATCY	2 cut(s)	1596, 1626
PvuII	CAGCTG	2 cut(s)	26, 749
RsaI	GTAC	4 cut(s)	64, 465, 683, 1623
RsaNI	GTAC	4 cut(s)	63, 464, 682, 1622
RseI	CAYNNNNRTG	4 cut(s)	14, 1473, 1605, 1828
SapI	GCTCTTC	1 cut(s)	1470
SaqAI	TTAA	5 cut(s)	123, 176, 453, 756, 1793
Sau3AI	GATC	9 cut(s)	20, 151, 379, 457, 571, 832, 1596, 1626, 1747
Sau96I	GGNCC	4 cut(s)	894, 1138, 1553, 1616
SchI	GAGTC	1 cut(s)	1314
ScrFI	CCNGG	3 cut(s)	996, 1003, 1142
SexAI	ACCWGGT	1 cut(s)	1140
SfaNI	GCATC	3 cut(s)	733, 1408, 1747
SfcI	CTRYAG	5 cut(s)	828, 868, 1296, 1762, 1920
SfuI	TTCGAA	1 cut(s)	1204
SinI	GGWCC	3 cut(s)	894, 1138, 1616
SmiMI	CAYNNNNRTG	4 cut(s)	14, 1473, 1605, 1828
SmlI	CTYRAG	1 cut(s)	1811
SmoI	CTYRAG	1 cut(s)	1811
SsiI	CCGC	7 cut(s)	190, 193, 250, 698, 862, 949, 1489
SspI	AATATT	1 cut(s)	1453
StyD4I	CCNGG	3 cut(s)	994, 1001, 1140
StyI	CCWWGG	4 cut(s)	609, 717, 1549, 1914
TaaI	ACNGT	9 cut(s)	16, 368, 855, 1121, 1258, 1297, 1444, 1656, 1715
TaiI	ACGT	5 cut(s)	592, 922, 1084, 1096, 1609
TaqI	TCGA	3 cut(s)	443, 1204, 1827
TatI	WGTACW	3 cut(s)	463, 681, 1621
TauI	GCSGC	3 cut(s)	193, 700, 952
TfiI	GAWTC	2 cut(s)	803, 817
Tru1I	TTAA	5 cut(s)	123, 176, 453, 756, 1793
Tru9I	TTAA	5 cut(s)	123, 176, 453, 756, 1793
TscAI	CASTG	5 cut(s)	421, 672, 858, 1126, 1525
TseFI	GTSAC	7 cut(s)	637, 703, 849, 1094, 1306, 1438, 1514
TseI	GCWGC	9 cut(s)	26, 129, 310, 343, 1073, 1394, 1639, 1718, 1891
Tsp45I	GTSAC	7 cut(s)	637, 703, 849, 1094, 1306, 1438, 1514
TspDTI	ATGAA	5 cut(s)	280, 323, 830, 1760, 1812
TspGWI	ACGGA	2 cut(s)	224, 1448
TspRI	CASTG	5 cut(s)	421, 672, 858, 1126, 1525
Van91I	CCANNNNNTGG	1 cut(s)	1217
VpaK11BI	GGWCC	3 cut(s)	894, 1138, 1616
VspI	ATTAAT	2 cut(s)	453, 756
XapI	RAATTY	8 cut(s)	44, 70, 81, 519, 630, 1206, 1226, 1819
XceI	RCATGY	1 cut(s)	1288
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	1823
ZraI	GACGTC	1 cut(s)	920
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.