Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011028

Physical Location & Seq

Genomic Coordinates Forward (+)

89437164 .. 89444108

Gene Structure 6945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3471 bp

ATGGAAGAAGAGCCGGAGTACGAAGAGCAGTACAACGAGGAGGACGACGAAGATGAGATAACGCAGGAAGACGCGTGGGCTGTGATTTCAGCCTATTTCGAAGAGAAGGGTTTAGTGAGGCAGCAGCTGGACTCGTTCGATGAGTTCATTCAGAACACAATGCAGGAGATTGTCGACGAGGCCGCCGATATCGAAATCCGACCCGAATCGCAGCATAACCCGGGTCACCAGCCCGATTTCGCTGAGACTATATACAAAATCAGCTTCGGCCAGATTTATCTGAGTAAGCCTATGATGACTGAGTCGGATGGTGAAACTGCAACGCTGTTTCCGAAAGCTGCGAGGTTGCGAAACTTGACCTATTCGGCACCTTTGTATGTGGATGTGACAAAGAGGGTTATAAAGAAAGGACATGATGGTGAAGAAGTGACTGAGACTCAGGATTTCACCAAAGTGTTCATTGGAAAGGTCCCAATTATGCTCCGTTCGAGTTATTGTACATTGTATCAGAATTCGGAGAAAGACTTGACGGAGCTGGGGGAATGTCCTTATGACCAAGGCGGGTATTTCATTATCAATGGGAGTGAGAAGGTGTTGATTGCTCAGGAGAAGATGAGCACGAACCACGTCTATGTCTTCAAGAAGAGGCAGCCTAATAAGTATGCTTATGTTGGGGAGGGTTCTTCAGGACAATACATTCGTGCTACTCTTCCGTATATTCGATCTGAGATTCCCATTATTATTGTCTTCCGGGCTCTTGGGTTTGTGGCAGACAAAGACATTTTGGAGCACATATGCTATGATTTTTCAGATACGCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTTATTCAGAATCAACAGGTAGCTCTAGATTATATTGGTAAAAGAGGTGCAACAGCTGGGGTACCTAGAGACAAGAGGATAAGGTATGCAAGAGATATTCTTCAAAAGGAAATGCTTCCACATGTTGGTGTCGGGGAGTTTTGTGAGACCAAGAAAGCATATTATTTCGGATACATCATTCACAGGCTTCTACTGTGTGCACTTGGTCGGAGAGCAGAAGATGATAGGGATCACTATGGAAATAAGAGGCTAGATCTTGCTGGCCCCTTACTCGGAAGCTTGTTTAGATCGCTATTCAGGAAGCTGACCAAGGATGTTAAAGGTTATGTTCAGAAGTGCGTTGATAATGGAAAGGATGTCAACCTGCAATTTGCAATTAAAGCAAAAACCATTACCAGTGGTCTCAAATATTCACTTGCTACTGGGAACTGGGGGCAAGCAAATGCAGCTGGGACAAGGGCTGGAGTGTCGCAGGTTTTAAATCGTTTGACATATGCATCTACATTATCACACTTGCGAAGGCTAAATTCTCCCATAGGGCGTGAAGGGAAATTGGCCAAACCCCGGCAGTTGCACAACTCACAGTGGGGAATGATGTGTCCCGCTGAGACACCTGAAGGGCAGGCATGCGGACTTGTAAAGAACCTTGCATTGATGGTCTACATTACTGTGGGATCAGCTGCATATCCAATCTTAGAATTTTTAGAAGAATGGGGTACAGAAAATTTTGAGGAAATTTCCCCTGCTGTTATTCCCCAAGCCACAAAGATTTTTGTTAATGGCTGCTGGGTTGGCATACATCGTGATCCTGAAATGTTGGTGAGAACATTAAGGAAGCTAAGGCGGCGGGTGGATGTCAATACTGAAGTTGGGGTTGTAAGAGATATCCGTCTGAAAGAATTGCGGATATATACTGATTATGGTCGTTGCAGTCGTCCATTATTCATTGTGGACAAGCAAAGGCTGCTTATAAAGAAGAAAGATATTCATGCATTGCAGCAGAGGGAAAACCCTGAAGACGGTGGTTGGCATGATCTCGTGGCAAAAGGATTTATAGAATATATTGACACTGAAGAAGAGGAGACCACTATGATTTCGATGACAATTAATGATCTTGTACAAGCAAGGCTCAATCCTGAGGAGGCATATTCTGACACTTACACTCATTGTGAAATTCACCCGTCACTTATATTGGGTGTTTGTGCTTCAATTATACCATTTCCTGATCATAATCAGTCTCCACGTAATACATATCAATCTGCCATGGGAAAGCAAGCTATGGGAATTTATGTCACCAATTATCAGTTCCGAATGGATACACTGGCTTATGTTCTGTACTACCCTCAGAAGCCACTTGTCACTACGCGAGCCATGGAGCATCTTCACTTCCGGCAACTTCCAGCTGGAATTAATGCCATTGTTGCCATTTCCTGCTACTCTGGTTATAATCAGGAAGATTCTGTCATTATGAATCAATCCTCTATAGATCGTGGATTTTTCCGGTCACTGTTCTTCCGCTCCTATAGGGATGAGGAAAAAAGATGGGGACCCTTGTCAAAGAAGATTTTGGACGGTATGCGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCACCTCCTGGAACCAGGGTTTCAGGTGAGGATGTTATCATAGGGAAGACCACTCCCATTGCTCCAGAGGAGGCTCAGGGGCAAGCTGCTTCACGTTACTCACGACGTGACCATAGTATAAGCTTACGGCACAGTGAAACTGGGATTGTGGACCAGGTTTTATTGACTACCAATGCCGATGGGTTGAGGTTTGTGAAAGTGAGGGTGAGGTCTGTTCGAATTCCACAGATTGGGGATAAATTTAGCAGTAGGCATGGACAGAAAGGGACAGTGGGTATGACATATACACAAGAAGACATGCCGTGGACTGTAGAAGGAGTCACCCCTGATATTATTGTGAACCCTCATGCTATTCCTTCCCGAATGACCATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTTGCAGCACACATGGGAAAGGAAGGAGATGCTACTCCCTTTACGGATGTGACTGTGGACAATATTAGCAAAGCTCTTCACAAATGTGGGTATCAAATGCGGGGATTTGAGACCATGTATAATGGTCACACTGGTCGGCGACTGAGTGCAATGATATTCCTTGGCCCTACATATTACCAGAGATTGAAGCATATGGTTGATGATAAGATCCATTCACGTGGTCGGGGTCCTGTACAGATCCTCACAAGGCAGCCTGCTGAGGGACGGTCTCGTGATGGTGGTTTACGATTTGGAGAGATGGAACGAGATTGCATGATTGCCCACGGTGCTGCTCACTTTCTTAAAGAGAGATTGTTTGATCAGAGTGATGCCTATAGGGTTCATGTCTGCGAGCGTTGTGGTTTAATAGCTATTGCAAATCTCAAGAAGAATTCATTCGAGTGCAGAGGTTGTAAGAACAAAACTGATATTGTTCAGGTTCACATTCCTTATGCCTGCAAGCTGCTATTCCAAGAGCTGATGGCCATGGCTATAGCACCAAGAATGCTCACAAAGGATGTCAAGCCTATCAAAGAAAAGAAGAAAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1156

Amino Acids

131.16

Weight (kDa)

7.18

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	37 - 419	1e-78	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	210 - 371	3.4e-52	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	444 - 508	9.6e-25	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	543 - 604	8.3e-24	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	629 - 680	6.3e-18	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	687 - 1050	7.1e-142	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1052 - 1143	1.6e-35	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21710
fragaria_vesca	FvH4_3g09270
malus_domestica	MD05G1313100.v1.1 MD10G1295300.v1.1
prunus_persica	Prupe.4G046700_v2.0.a1
pyrus_communis	pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720
rosa_chinensis	RchiOBHm_Chr5g0008301
rosa_laevigata	RLG00000031560
rosa_multiflora	Rmu_sc0021840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068160
rosa_rugosa	Rorug04G0434800
rosa_samantha	Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600
rosa_wichuraiana	Rw5G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	401, 1829, 2304
Acc36I	ACCTGC	2 cut(s)	1230, 1321
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	2 cut(s)	367, 919
AccB7I	CCANNNNNTGG	2 cut(s)	983, 2705
AccBSI	CCGCTC	1 cut(s)	2376
AccI	GTMKAC	2 cut(s)	174, 1518
AccII	CGCG	2 cut(s)	74, 2224
AclWI	GGATC	5 cut(s)	1095, 1540, 1658, 3079, 3109
AcoI	YGGCCR	3 cut(s)	268, 1413, 3399
AcuI	CTGAAG	5 cut(s)	669, 1494, 1743, 1893, 1950
AcvI	CACGTG	1 cut(s)	3095
AdeI	CACNNNGTG	1 cut(s)	2582
AfaI	GTAC	8 cut(s)	20, 32, 499, 921, 1576, 1977, 2195, 3111
AfiI	CCNNNNNNNGG	6 cut(s)	983, 1130, 1422, 1877, 2705, 3137
AflIII	ACRYGT	2 cut(s)	72, 979
AgsI	TTSAA	4 cut(s)	640, 962, 2067, 3064
AhdI	GACNNNNNGTC	1 cut(s)	2847
AjiI	CACGTC	2 cut(s)	628, 2582
AjnI	CCWGG	4 cut(s)	843, 2482, 2489, 2628
AjuI	GAANNNNNNNTTGG	2 cut(s)	2147, 2179
AleI	CACNNNNGTG	2 cut(s)	452, 2961
Alw21I	GWGCWC	3 cut(s)	620, 792, 1060
Alw44I	GTGCAC	1 cut(s)	1056
AlwI	GGATC	5 cut(s)	1095, 1540, 1658, 3079, 3109
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	6 cut(s)	180, 268, 1120, 1413, 3040, 3399
ApaLI	GTGCAC	1 cut(s)	1056
ArsI	GACNNNNNNTTYG	2 cut(s)	681, 713
AseI	ATTAAT	2 cut(s)	1965, 2268
Asp700I	GAANNNNTTC	2 cut(s)	972, 3311
Asp718I	GGTACC	1 cut(s)	919
AspS9I	GGNCC	6 cut(s)	469, 1121, 2405, 2626, 3041, 3104
AsuC2I	CCSGG	4 cut(s)	221, 222, 752, 1423
AsuII	TTCGAA	2 cut(s)	99, 2692
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	4 cut(s)	469, 2405, 2626, 3104
AxyI	CCTNAGG	1 cut(s)	1995
BaeGI	GKGCMC	1 cut(s)	1060
BalI	TGGCCA	2 cut(s)	1415, 3401
BanI	GGYRCC	2 cut(s)	367, 919
BanII	GRGCYC	1 cut(s)	757
BauI	CACGAG	2 cut(s)	1895, 3147
BbrPI	CACGTG	1 cut(s)	3095
BbsI	GAAGAC	6 cut(s)	75, 628, 739, 1881, 2528, 2775
Bbv12I	GWGCWC	3 cut(s)	620, 792, 1060
BbvCI	CCTCAGC	1 cut(s)	3135
BceAI	ACGGC	2 cut(s)	2618, 2761
BciT130I	CCWGG	4 cut(s)	845, 2484, 2491, 2630
BciVI	GTATCC	2 cut(s)	1022, 2167
BclI	TGATCA	2 cut(s)	2083, 3235
BcnI	CCSGG	4 cut(s)	221, 222, 752, 1423
BfaI	CTAG	3 cut(s)	884, 924, 1109
BfmI	CTRYAG	5 cut(s)	2340, 2380, 2784, 3250, 3408
BfuAI	ACCTGC	2 cut(s)	1230, 1321
BfuI	GTATCC	2 cut(s)	1022, 2167
BglII	AGATCT	1 cut(s)	1111
Bme1390I	CCNGG	8 cut(s)	221, 222, 752, 845, 1423, 2484, 2491, 2630
Bme18I	GGWCC	4 cut(s)	469, 2405, 2626, 3104
BmeRI	GACNNNNNGTC	1 cut(s)	2847
BmeT110I	CYCGRG	1 cut(s)	220
BmgBI	CACGTC	2 cut(s)	628, 2582
BmgT120I	GGNCC	6 cut(s)	469, 1121, 2405, 2626, 3041, 3104
BmiI	GGNNCC	9 cut(s)	369, 471, 921, 1123, 2406, 2407, 2488, 3105, 3466
BmrFI	CCNGG	8 cut(s)	221, 222, 752, 845, 1423, 2484, 2491, 2630
BmrI	ACTGGG	3 cut(s)	1290, 1297, 2625
BmsI	GCATC	4 cut(s)	1364, 2245, 2896, 3235
BmuI	ACTGGG	3 cut(s)	1290, 1297, 2625
BoxI	GACNNNNGTC	1 cut(s)	2410
BpiI	GAAGAC	6 cut(s)	75, 628, 739, 1881, 2528, 2775
BpmI	CTGGAG	2 cut(s)	1341, 2523
Bpu10I	CCTNAGC	4 cut(s)	603, 1697, 2550, 3135
Bpu14I	TTCGAA	2 cut(s)	99, 2692
BpuEI	CTTGAG	1 cut(s)	3284
BpuMI	CCSGG	4 cut(s)	221, 222, 752, 1423
BsaAI	YACGTR	2 cut(s)	2102, 3095
BsaBI	GATNNNNATC	2 cut(s)	1086, 2088
BsaI	GGTCTC	5 cut(s)	998, 1265, 1934, 2981, 3150
BsaWI	WCCGGW	1 cut(s)	2358
Bsc4I	CCNNNNNNNGG	6 cut(s)	983, 1130, 1422, 1877, 2705, 3137
Bse1I	ACTGG	6 cut(s)	1254, 1285, 1292, 2184, 2620, 3013
Bse21I	CCTNAGG	1 cut(s)	1995
Bse3DI	GCAATG	3 cut(s)	1850, 2532, 3033
Bse8I	GATNNNNATC	2 cut(s)	1086, 2088
BseBI	CCWGG	4 cut(s)	845, 2484, 2491, 2630
BseJI	GATNNNNATC	2 cut(s)	1086, 2088
BseLI	CCNNNNNNNGG	6 cut(s)	983, 1130, 1422, 1877, 2705, 3137
BseMI	GCAATG	3 cut(s)	1850, 2532, 3033
BseNI	ACTGG	6 cut(s)	1254, 1285, 1292, 2184, 2620, 3013
BseRI	GAGGAG	4 cut(s)	53, 1952, 2012, 2558
BseSI	GKGCMC	1 cut(s)	1060
BseYI	CCCAGC	4 cut(s)	535, 914, 1307, 1644
BsgI	GTGCAG	1 cut(s)	3340
Bsh1236I	CGCG	2 cut(s)	74, 2224
BshFI	GGCC	6 cut(s)	182, 270, 1122, 1415, 3042, 3401
BshNI	GGYRCC	2 cut(s)	367, 919
BsiHKAI	GWGCWC	3 cut(s)	620, 792, 1060
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	6 cut(s)	14, 221, 751, 1423, 2248, 2359
BslFI	GGGAC	6 cut(s)	455, 1324, 1443, 2418, 2755, 3153
BslI	CCNNNNNNNGG	6 cut(s)	983, 1130, 1422, 1877, 2705, 3137
BsmFI	GGGAC	6 cut(s)	455, 1324, 1443, 2418, 2755, 3153
BsmI	GAATGC	1 cut(s)	3426
BsnI	GGCC	6 cut(s)	182, 270, 1122, 1415, 3042, 3401
Bso31I	GGTCTC	5 cut(s)	998, 1265, 1934, 2981, 3150
BsoBI	CYCGRG	1 cut(s)	220
Bsp119I	TTCGAA	2 cut(s)	99, 2692
Bsp1286I	GDGCHC	4 cut(s)	620, 757, 792, 1060
Bsp1407I	TGTACA	3 cut(s)	497, 1975, 3109
Bsp19I	CCATGG	3 cut(s)	2121, 2229, 3402
BspANI	GGCC	6 cut(s)	182, 270, 1122, 1415, 3042, 3401
BspFNI	CGCG	2 cut(s)	74, 2224
BspLI	GGNNCC	9 cut(s)	369, 471, 921, 1123, 2406, 2407, 2488, 3105, 3466
BspMI	ACCTGC	2 cut(s)	1230, 1321
BspPI	GGATC	5 cut(s)	1095, 1540, 1658, 3079, 3109
BspQI	GCTCTTC	3 cut(s)	3, 18, 2958
BspT104I	TTCGAA	2 cut(s)	99, 2692
BspT107I	GGYRCC	2 cut(s)	367, 919
BspTNI	GGTCTC	5 cut(s)	998, 1265, 1934, 2981, 3150
BsrBI	CCGCTC	1 cut(s)	2376
BsrDI	GCAATG	3 cut(s)	1850, 2532, 3033
BsrGI	TGTACA	3 cut(s)	497, 1975, 3109
BsrI	ACTGG	6 cut(s)	1254, 1285, 1292, 2184, 2620, 3013
BssSI	CACGAG	2 cut(s)	1895, 3147
BssT1I	CCWWGG	6 cut(s)	556, 1167, 2121, 2229, 3037, 3402
Bst2BI	CACGAG	2 cut(s)	1895, 3147
Bst2UI	CCWGG	4 cut(s)	845, 2484, 2491, 2630
Bst6I	CTCTTC	7 cut(s)	3, 18, 96, 638, 714, 1929, 2958
BstAPI	GCANNNNNTGC	1 cut(s)	1822
BstAUI	TGTACA	3 cut(s)	497, 1975, 3109
BstBAI	YACGTR	2 cut(s)	2102, 3095
BstBI	TTCGAA	2 cut(s)	99, 2692
BstDSI	CCRYGG	5 cut(s)	2121, 2229, 2777, 3199, 3402
BstEII	GGTNACC	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	74, 2224
BstMWI	GCNNNNNNNGC	7 cut(s)	1238, 1304, 1650, 1702, 1822, 2279, 3203
BstNI	CCWGG	4 cut(s)	845, 2484, 2491, 2630
BstNSI	RCATGY	3 cut(s)	983, 1488, 2776
BstPAI	GACNNNNGTC	1 cut(s)	2410
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	8 cut(s)	219, 220, 750, 843, 1421, 2482, 2489, 2628
BstSFI	CTRYAG	5 cut(s)	2340, 2380, 2784, 3250, 3408
BstSLI	GKGCMC	1 cut(s)	1060
BstUI	CGCG	2 cut(s)	74, 2224
BstV2I	GAAGAC	6 cut(s)	75, 628, 739, 1881, 2528, 2775
BstX2I	RGATCY	3 cut(s)	1111, 3084, 3114
BstXI	CCANNNNNNTGG	1 cut(s)	3095
BstYI	RGATCY	3 cut(s)	1111, 3084, 3114
Bsu36I	CCTNAGG	1 cut(s)	1995
BsuI	GTATCC	2 cut(s)	1022, 2167
BsuRI	GGCC	6 cut(s)	182, 270, 1122, 1415, 3042, 3401
BtgI	CCRYGG	5 cut(s)	2121, 2229, 2777, 3199, 3402
BtrI	CACGTC	2 cut(s)	628, 2582
BtsIMutI	CAGTG	8 cut(s)	1261, 1448, 1926, 2177, 2363, 2614, 2751, 3006
BveI	ACCTGC	2 cut(s)	1230, 1321
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	6 cut(s)	469, 1121, 2405, 2626, 3041, 3104
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	80
CsiI	ACCWGGT	1 cut(s)	2628
Csp6I	GTAC	8 cut(s)	19, 31, 498, 920, 1575, 1976, 2194, 3110
CspCI	CAANNNNNGTGG	2 cut(s)	2515, 2550
CviQI	GTAC	8 cut(s)	19, 31, 498, 920, 1575, 1976, 2194, 3110
DraI	TTTAAA	1 cut(s)	1338
DraIII	CACNNNGTG	1 cut(s)	2582
DriI	GACNNNNNGTC	1 cut(s)	2847
EaeI	YGGCCR	3 cut(s)	268, 1413, 3399
Eam1104I	CTCTTC	7 cut(s)	3, 18, 96, 638, 714, 1929, 2958
Eam1105I	GACNNNNNGTC	1 cut(s)	2847
EarI	CTCTTC	7 cut(s)	3, 18, 96, 638, 714, 1929, 2958
Eco130I	CCWWGG	6 cut(s)	556, 1167, 2121, 2229, 3037, 3402
Eco24I	GRGCYC	1 cut(s)	757
Eco31I	GGTCTC	5 cut(s)	998, 1265, 1934, 2981, 3150
Eco32I	GATATC	2 cut(s)	190, 1744
Eco47I	GGWCC	4 cut(s)	469, 2405, 2626, 3104
Eco57I	CTGAAG	5 cut(s)	669, 1494, 1743, 1893, 1950
Eco72I	CACGTG	1 cut(s)	3095
Eco81I	CCTNAGG	1 cut(s)	1995
Eco88I	CYCGRG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	224
EcoO109I	RGGNCCY	3 cut(s)	469, 2405, 3104
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	3 cut(s)	511, 2694, 3307
EcoRII	CCWGG	4 cut(s)	843, 2482, 2489, 2628
EcoRV	GATATC	2 cut(s)	190, 1744
EcoT14I	CCWWGG	6 cut(s)	556, 1167, 2121, 2229, 3037, 3402
EcoT22I	ATGCAT	2 cut(s)	1357, 1852
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	6 cut(s)	556, 1167, 2121, 2229, 3037, 3402
FaqI	GGGAC	6 cut(s)	455, 1324, 1443, 2418, 2755, 3153
FauI	CCCGC	4 cut(s)	554, 1468, 1698, 2970
FauNDI	CATATG	3 cut(s)	794, 1351, 3069
FbaI	TGATCA	2 cut(s)	2083, 3235
FblI	GTMKAC	2 cut(s)	174, 1518
FriOI	GRGCYC	1 cut(s)	757
FspBI	CTAG	3 cut(s)	884, 924, 1109
GsaI	CCCAGC	4 cut(s)	539, 918, 1311, 1648
GsuI	CTGGAG	2 cut(s)	1341, 2523
HaeIII	GGCC	6 cut(s)	182, 270, 1122, 1415, 3042, 3401
HapII	CCGG	6 cut(s)	14, 221, 751, 1423, 2248, 2359
HgaI	GACGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	175, 1219
HindII	GTYRAC	2 cut(s)	175, 1219
HindIII	AAGCTT	2 cut(s)	1135, 2596
HinfI	GANTC	9 cut(s)	131, 206, 302, 436, 730, 868, 2315, 2329, 2793
HpaII	CCGG	6 cut(s)	14, 221, 751, 1423, 2248, 2359
Hpy99I	CGWCG	3 cut(s)	50, 179, 2583
HpyCH4IV	ACGT	5 cut(s)	627, 2101, 2569, 2581, 3094
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1238, 1304, 1650, 1702, 1822, 2279, 3203
HpySE526I	ACGT	5 cut(s)	627, 2101, 2569, 2581, 3094
KflI	GGGWCCC	1 cut(s)	2405
KpnI	GGTACC	1 cut(s)	923
Ksp22I	TGATCA	2 cut(s)	2083, 3235
LguI	GCTCTTC	3 cut(s)	3, 18, 2958
LmnI	GCTCC	7 cut(s)	486, 532, 787, 2233, 2381, 2542, 3464
LweI	GCATC	4 cut(s)	1364, 2245, 2896, 3235
MabI	ACCWGGT	1 cut(s)	2628
MaeI	CTAG	3 cut(s)	884, 924, 1109
MaeII	ACGT	5 cut(s)	627, 2101, 2569, 2581, 3094
MbiI	CCGCTC	1 cut(s)	2376
MflI	RGATCY	3 cut(s)	1111, 3084, 3114
MhlI	GDGCHC	4 cut(s)	620, 757, 792, 1060
MlsI	TGGCCA	2 cut(s)	1415, 3401
MluI	ACGCGT	1 cut(s)	72
MluNI	TGGCCA	2 cut(s)	1415, 3401
MlyI	GAGTC	4 cut(s)	125, 311, 430, 2802
MmeI	TCCRAC	3 cut(s)	223, 285, 1046
Mox20I	TGGCCA	2 cut(s)	1415, 3401
Mph1103I	ATGCAT	2 cut(s)	1357, 1852
MroXI	GAANNNNTTC	2 cut(s)	972, 3311
MscI	TGGCCA	2 cut(s)	1415, 3401
MseI	TTAA	9 cut(s)	1176, 1236, 1337, 1635, 1688, 1965, 2268, 3219, 3281
MslI	CAYNNNNRTG	8 cut(s)	417, 452, 630, 984, 1526, 2961, 3093, 3316
Msp20I	TGGCCA	2 cut(s)	1415, 3401
MspA1I	CMGCKG	6 cut(s)	127, 914, 1307, 1463, 1538, 2261
MspI	CCGG	6 cut(s)	14, 221, 751, 1423, 2248, 2359
MspR9I	CCNGG	8 cut(s)	221, 222, 752, 845, 1423, 2484, 2491, 2630
Mva1269I	GAATGC	1 cut(s)	3426
MvaI	CCWGG	4 cut(s)	845, 2484, 2491, 2630
MvnI	CGCG	2 cut(s)	74, 2224
MwoI	GCNNNNNNNGC	7 cut(s)	1238, 1304, 1650, 1702, 1822, 2279, 3203
NciI	CCSGG	4 cut(s)	221, 222, 752, 1423
NcoI	CCATGG	3 cut(s)	2121, 2229, 3402
NdeI	CATATG	3 cut(s)	794, 1351, 3069
NlaIV	GGNNCC	9 cut(s)	369, 471, 921, 1123, 2406, 2407, 2488, 3105, 3466
NsiI	ATGCAT	2 cut(s)	1357, 1852
NspI	RCATGY	3 cut(s)	983, 1488, 2776
NspV	TTCGAA	2 cut(s)	99, 2692
OliI	CACNNNNGTG	2 cut(s)	452, 2961
PaeI	GCATGC	1 cut(s)	1488
PciI	ACATGT	1 cut(s)	979
PciSI	GCTCTTC	3 cut(s)	3, 18, 2958
PcsI	WCGNNNNNNNCGW	5 cut(s)	42, 183, 329, 1789, 2575
PctI	GAATGC	1 cut(s)	3426
PdmI	GAANNNNTTC	2 cut(s)	972, 3311
PfeI	GAWTC	5 cut(s)	206, 730, 868, 2315, 2329
PflFI	GACNNNGTC	1 cut(s)	301
PflMI	CCANNNNNTGG	2 cut(s)	983, 2705
PfoI	TCCNGGA	1 cut(s)	2482
PleI	GAGTC	4 cut(s)	125, 310, 430, 2801
PmaCI	CACGTG	1 cut(s)	3095
PmlI	CACGTG	1 cut(s)	3095
PpsI	GAGTC	4 cut(s)	125, 310, 430, 2801
Ppu21I	YACGTR	2 cut(s)	2102, 3095
PpuMI	RGGWCCY	3 cut(s)	469, 2405, 3104
PscI	ACATGT	1 cut(s)	979
PshAI	GACNNNNGTC	1 cut(s)	2410
PshBI	ATTAAT	2 cut(s)	1965, 2268
PsiI	TTATAA	3 cut(s)	401, 1829, 2304
Psp5II	RGGWCCY	3 cut(s)	469, 2405, 3104
Psp6I	CCWGG	4 cut(s)	843, 2482, 2489, 2628
PspCI	CACGTG	1 cut(s)	3095
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	4 cut(s)	535, 914, 1307, 1644
PspGI	CCWGG	4 cut(s)	843, 2482, 2489, 2628
PspN4I	GGNNCC	9 cut(s)	369, 471, 921, 1123, 2406, 2407, 2488, 3105, 3466
PspPI	GGNCC	6 cut(s)	469, 1121, 2405, 2626, 3041, 3104
PspPPI	RGGWCCY	3 cut(s)	469, 2405, 3104
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	3 cut(s)	1111, 3084, 3114
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	5 cut(s)	127, 914, 1307, 1538, 2261
RsaI	GTAC	8 cut(s)	20, 32, 499, 921, 1576, 1977, 2195, 3111
RsaNI	GTAC	8 cut(s)	19, 31, 498, 920, 1575, 1976, 2194, 3110
RseI	CAYNNNNRTG	8 cut(s)	417, 452, 630, 984, 1526, 2961, 3093, 3316
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	3 cut(s)	3, 18, 2958
SaqAI	TTAA	9 cut(s)	1176, 1236, 1337, 1635, 1688, 1965, 2268, 3219, 3281
Sau96I	GGNCC	6 cut(s)	469, 1121, 2405, 2626, 3041, 3104
SchI	GAGTC	4 cut(s)	125, 311, 430, 2802
ScrFI	CCNGG	8 cut(s)	221, 222, 752, 845, 1423, 2484, 2491, 2630
SduI	GDGCHC	4 cut(s)	620, 757, 792, 1060
SexAI	ACCWGGT	1 cut(s)	2628
SfaNI	GCATC	4 cut(s)	1364, 2245, 2896, 3235
SfcI	CTRYAG	5 cut(s)	2340, 2380, 2784, 3250, 3408
SfuI	TTCGAA	2 cut(s)	99, 2692
SinI	GGWCC	4 cut(s)	469, 2405, 2626, 3104
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	8 cut(s)	417, 452, 630, 984, 1526, 2961, 3093, 3316
SmlI	CTYRAG	1 cut(s)	3299
SmoI	CTYRAG	1 cut(s)	3299
SphI	GCATGC	1 cut(s)	1488
SspI	AATATT	2 cut(s)	1268, 2941
SspMI	CTAG	3 cut(s)	884, 924, 1109
StyD4I	CCNGG	8 cut(s)	219, 220, 750, 843, 1421, 2482, 2489, 2628
StyI	CCWWGG	6 cut(s)	556, 1167, 2121, 2229, 3037, 3402
TaiI	ACGT	5 cut(s)	630, 2104, 2572, 2584, 3097
TaqI	TCGA	9 cut(s)	99, 138, 174, 192, 488, 721, 1955, 2692, 3315
TatI	WGTACW	5 cut(s)	30, 497, 1975, 2193, 3109
TauI	GCSGC	3 cut(s)	185, 1705, 2440
TfiI	GAWTC	5 cut(s)	206, 730, 868, 2315, 2329
Tru1I	TTAA	9 cut(s)	1176, 1236, 1337, 1635, 1688, 1965, 2268, 3219, 3281
Tru9I	TTAA	9 cut(s)	1176, 1236, 1337, 1635, 1688, 1965, 2268, 3219, 3281
TscAI	CASTG	8 cut(s)	1261, 1448, 1933, 2184, 2370, 2614, 2751, 3013
TspDTI	ATGAA	8 cut(s)	136, 448, 559, 1792, 1835, 2342, 3248, 3300
TspGWI	ACGGA	5 cut(s)	473, 545, 702, 1736, 2936
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	8 cut(s)	1261, 1448, 1933, 2184, 2370, 2614, 2751, 3013
Tth111I	GACNNNGTC	1 cut(s)	301
Van91I	CCANNNNNTGG	2 cut(s)	983, 2705
VneI	GTGCAC	1 cut(s)	1056
VpaK11BI	GGWCC	4 cut(s)	469, 2405, 2626, 3104
VspI	ATTAAT	2 cut(s)	1965, 2268
XbaI	TCTAGA	1 cut(s)	883
XceI	RCATGY	3 cut(s)	983, 1488, 2776
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	2 cut(s)	174, 1518
XmnI	GAANNNNTTC	2 cut(s)	972, 3311
XspI	CTAG	3 cut(s)	884, 924, 1109
Zsp2I	ATGCAT	2 cut(s)	1357, 1852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.