DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21710 |
| fragaria_vesca | FvH4_3g09270 |
| malus_domestica | MD05G1313100.v1.1 MD10G1295300.v1.1 |
| prunus_persica | Prupe.4G046700_v2.0.a1 |
| pyrus_communis | pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720 |
| rosa_chinensis | RchiOBHm_Chr5g0008301 |
| rosa_laevigata | RLG00000031560 |
| rosa_multiflora | Rmu_sc0021840.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068160 |
| rosa_rugosa | Rorug04G0434800 |
| rosa_samantha | Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600 |
| rosa_wichuraiana | Rw5G005730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 575, 2385 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1435 |
| Acc36I | ACCTGC | 1 cut(s) | 1311 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1064, 2810 |
| AccBSI | CCGCTC | 1 cut(s) | 2457 |
| AccI | GTMKAC | 4 cut(s) | 630, 1599, 2830, 3462 |
| AccIII | TCCGGA | 1 cut(s) | 2796 |
| AclWI | GGATC | 9 cut(s) | 1025, 1030, 1176, 1200, 1621, 1739, 2739, 3184, 3214 |
| AcoI | YGGCCR | 4 cut(s) | 183, 1494, 1861, 3106 |
| AcuI | CTGAAG | 5 cut(s) | 1575, 1824, 1974, 2097, 3188 |
| AcyI | GRCGYC | 2 cut(s) | 72, 2512 |
| AdeI | CACNNNGTG | 1 cut(s) | 2687 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1045, 1064, 1211, 1503, 1958, 2810, 3204, 3205, 3242 |
| AflIII | ACRYGT | 2 cut(s) | 633, 1060 |
| AgsI | TTSAA | 4 cut(s) | 640, 947, 1043, 2148 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2952 |
| AhlI | ACTAGT | 2 cut(s) | 746, 1334 |
| AjnI | CCWGG | 4 cut(s) | 74, 341, 2388, 2587 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2228, 2260 |
| AleI | CACNNNNGTG | 1 cut(s) | 3066 |
| Alw21I | GWGCWC | 4 cut(s) | 620, 838, 1141, 3058 |
| Alw26I | GTCTC | 7 cut(s) | 239, 391, 1079, 2015, 2181, 2582, 3086 |
| Alw44I | GTGCAC | 1 cut(s) | 1137 |
| AlwI | GGATC | 9 cut(s) | 1025, 1030, 1176, 1200, 1621, 1739, 2739, 3184, 3214 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3166 |
| Ama87I | CYCGRG | 4 cut(s) | 14, 203, 220, 839 |
| Aor13HI | TCCGGA | 1 cut(s) | 2796 |
| AoxI | GGCC | 8 cut(s) | 78, 183, 223, 1339, 1494, 1861, 3106, 3145 |
| ApaLI | GTGCAC | 1 cut(s) | 1137 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 762, 794 |
| AseI | ATTAAT | 1 cut(s) | 2046 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 591, 1053 |
| AspLEI | GCGC | 3 cut(s) | 120, 2656, 3311 |
| AspS9I | GGNCC | 6 cut(s) | 78, 223, 1202, 2487, 3146, 3209 |
| AsuC2I | CCSGG | 2 cut(s) | 221, 222 |
| AsuHPI | GGTGA | 9 cut(s) | 421, 431, 439, 1771, 2224, 2618, 2797, 2825, 2893 |
| AsuII | TTCGAA | 2 cut(s) | 99, 1225 |
| AvaI | CYCGRG | 4 cut(s) | 14, 203, 220, 839 |
| AvaII | GGWCC | 3 cut(s) | 1202, 2487, 3209 |
| BaeGI | GKGCMC | 1 cut(s) | 1141 |
| BalI | TGGCCA | 2 cut(s) | 1496, 3108 |
| BanII | GRGCYC | 3 cut(s) | 15, 838, 3058 |
| BauI | CACGAG | 2 cut(s) | 2304, 3252 |
| BbsI | GAAGAC | 1 cut(s) | 2880 |
| Bbv12I | GWGCWC | 4 cut(s) | 620, 838, 1141, 3058 |
| BbvCI | CCTCAGC | 1 cut(s) | 3240 |
| BceAI | ACGGC | 4 cut(s) | 65, 1520, 1848, 2699 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2521, 2555 |
| BciT130I | CCWGG | 4 cut(s) | 76, 343, 2390, 2589 |
| BciVI | GTATCC | 2 cut(s) | 2248, 2793 |
| BclI | TGATCA | 1 cut(s) | 553 |
| BcnI | CCSGG | 2 cut(s) | 221, 222 |
| BcoDI | GTCTC | 7 cut(s) | 239, 391, 1079, 2015, 2181, 2582, 3086 |
| BcuI | ACTAGT | 2 cut(s) | 746, 1334 |
| BfaI | CTAG | 5 cut(s) | 489, 747, 1248, 1335, 2595 |
| BfmI | CTRYAG | 3 cut(s) | 1683, 2421, 3513 |
| BfoI | RGCGCY | 1 cut(s) | 3312 |
| BfuAI | ACCTGC | 1 cut(s) | 1311 |
| BfuI | GTATCC | 2 cut(s) | 2248, 2793 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 671, 3114 |
| BglII | AGATCT | 1 cut(s) | 2789 |
| Bme1390I | CCNGG | 6 cut(s) | 76, 221, 222, 343, 2390, 2589 |
| Bme18I | GGWCC | 3 cut(s) | 1202, 2487, 3209 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2952 |
| BmeT110I | CYCGRG | 4 cut(s) | 14, 203, 220, 839 |
| BmgT120I | GGNCC | 6 cut(s) | 78, 223, 1202, 2487, 3146, 3209 |
| BmiI | GGNNCC | 8 cut(s) | 12, 471, 1204, 2488, 2489, 3148, 3210, 3574 |
| BmrFI | CCNGG | 6 cut(s) | 76, 221, 222, 343, 2390, 2589 |
| BmrI | ACTGGG | 4 cut(s) | 708, 1220, 1371, 1378 |
| BmsI | GCATC | 5 cut(s) | 723, 2326, 2355, 3001, 3340 |
| BmuI | ACTGGG | 4 cut(s) | 708, 1220, 1371, 1378 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2492 |
| BpiI | GAAGAC | 1 cut(s) | 2880 |
| BpmI | CTGGAG | 1 cut(s) | 1422 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1778, 2643, 3240 |
| Bpu14I | TTCGAA | 2 cut(s) | 99, 1225 |
| BpuEI | CTTGAG | 2 cut(s) | 1474, 3389 |
| BpuMI | CCSGG | 2 cut(s) | 221, 222 |
| BsaAI | YACGTR | 4 cut(s) | 634, 670, 2183, 2190 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1167, 2169 |
| BsaHI | GRCGYC | 2 cut(s) | 72, 2512 |
| BsaI | GGTCTC | 2 cut(s) | 2582, 3086 |
| BsaWI | WCCGGW | 2 cut(s) | 2439, 2796 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1045, 1064, 1211, 1503, 1958, 2810, 3204, 3205, 3242 |
| Bse1I | ACTGG | 6 cut(s) | 714, 1215, 1366, 1373, 2265, 3212 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1167, 2169 |
| BseAI | TCCGGA | 1 cut(s) | 2796 |
| BseBI | CCWGG | 4 cut(s) | 76, 343, 2390, 2589 |
| BseGI | GGATG | 9 cut(s) | 313, 388, 738, 1258, 1536, 2116, 2572, 2653, 3034 |
| BseJI | GATNNNNATC | 2 cut(s) | 1167, 2169 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1045, 1064, 1211, 1503, 1958, 2810, 3204, 3205, 3242 |
| BseMII | CTCAG | 7 cut(s) | 102, 378, 452, 911, 2297, 2657, 3231 |
| BseNI | ACTGG | 6 cut(s) | 714, 1215, 1366, 1373, 2265, 3212 |
| BseRI | GAGGAG | 3 cut(s) | 23, 2033, 2486 |
| BseSI | GKGCMC | 1 cut(s) | 1141 |
| BseX3I | CGGCCG | 1 cut(s) | 183 |
| BseYI | CCCAGC | 1 cut(s) | 535 |
| BsgI | GTGCAG | 1 cut(s) | 3445 |
| Bsh1285I | CGRYCG | 1 cut(s) | 186 |
| BshFI | GGCC | 8 cut(s) | 80, 185, 225, 1341, 1496, 1863, 3108, 3147 |
| BsiEI | CGRYCG | 1 cut(s) | 186 |
| BsiHKAI | GWGCWC | 4 cut(s) | 620, 838, 1141, 3058 |
| BsiHKCI | CYCGRG | 4 cut(s) | 14, 203, 220, 839 |
| BsiSI | CCGG | 3 cut(s) | 221, 2440, 2797 |
| BslFI | GGGAC | 6 cut(s) | 682, 1188, 2480, 2500, 2860, 3258 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1045, 1064, 1211, 1503, 1958, 2810, 3204, 3205, 3242 |
| BsmAI | GTCTC | 7 cut(s) | 239, 391, 1079, 2015, 2181, 2582, 3086 |
| BsmFI | GGGAC | 6 cut(s) | 682, 1188, 2480, 2500, 2860, 3258 |
| BsmI | GAATGC | 1 cut(s) | 3531 |
| BsnI | GGCC | 8 cut(s) | 80, 185, 225, 1341, 1496, 1863, 3108, 3147 |
| Bso31I | GGTCTC | 2 cut(s) | 2582, 3086 |
| BsoBI | CYCGRG | 4 cut(s) | 14, 203, 220, 839 |
| Bsp119I | TTCGAA | 2 cut(s) | 99, 1225 |
| Bsp1286I | GDGCHC | 5 cut(s) | 15, 620, 838, 1141, 3058 |
| Bsp13I | TCCGGA | 1 cut(s) | 2796 |
| Bsp1407I | TGTACA | 1 cut(s) | 2056 |
| Bsp19I | CCATGG | 5 cut(s) | 2310, 2637, 2882, 3304, 3507 |
| BspANI | GGCC | 8 cut(s) | 80, 185, 225, 1341, 1496, 1863, 3108, 3147 |
| BspCNI | CTCAG | 7 cut(s) | 101, 377, 451, 910, 2296, 2656, 3232 |
| BspEI | TCCGGA | 1 cut(s) | 2796 |
| BspLI | GGNNCC | 8 cut(s) | 12, 471, 1204, 2488, 2489, 3148, 3210, 3574 |
| BspMAI | CTGCAG | 1 cut(s) | 1687 |
| BspMI | ACCTGC | 1 cut(s) | 1311 |
| BspPI | GGATC | 9 cut(s) | 1025, 1030, 1176, 1200, 1621, 1739, 2739, 3184, 3214 |
| BspQI | GCTCTTC | 2 cut(s) | 3063, 3494 |
| BspT104I | TTCGAA | 2 cut(s) | 99, 1225 |
| BspTNI | GGTCTC | 2 cut(s) | 2582, 3086 |
| BsrBI | CCGCTC | 1 cut(s) | 2457 |
| BsrGI | TGTACA | 1 cut(s) | 2056 |
| BsrI | ACTGG | 6 cut(s) | 714, 1215, 1366, 1373, 2265, 3212 |
| BssNAI | GTATAC | 2 cut(s) | 1600, 3463 |
| BssNI | GRCGYC | 2 cut(s) | 72, 2512 |
| BssSI | CACGAG | 2 cut(s) | 2304, 3252 |
| BssT1I | CCWWGG | 6 cut(s) | 2310, 2637, 2882, 3142, 3304, 3507 |
| Bst1107I | GTATAC | 2 cut(s) | 1600, 3463 |
| Bst2BI | CACGAG | 2 cut(s) | 2304, 3252 |
| Bst2UI | CCWGG | 4 cut(s) | 76, 343, 2390, 2589 |
| Bst4CI | ACNGT | 8 cut(s) | 994, 1134, 1609, 2429, 2714, 2851, 2890, 3037 |
| Bst6I | CTCTTC | 6 cut(s) | 96, 795, 2010, 2073, 3063, 3494 |
| BstACI | GRCGYC | 2 cut(s) | 72, 2512 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3432 |
| BstAUI | TGTACA | 1 cut(s) | 2056 |
| BstBAI | YACGTR | 4 cut(s) | 634, 670, 2183, 2190 |
| BstBI | TTCGAA | 2 cut(s) | 99, 1225 |
| BstDSI | CCRYGG | 8 cut(s) | 1502, 2310, 2428, 2637, 2882, 3199, 3304, 3507 |
| BstEII | GGTNACC | 1 cut(s) | 2899 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1043 |
| BstF5I | GGATG | 9 cut(s) | 313, 388, 738, 1258, 1536, 2116, 2572, 2653, 3034 |
| BstH2I | RGCGCY | 1 cut(s) | 3312 |
| BstHHI | GCGC | 3 cut(s) | 120, 2656, 3311 |
| BstMAI | GTCTC | 7 cut(s) | 239, 391, 1079, 2015, 2181, 2582, 3086 |
| BstMCI | CGRYCG | 1 cut(s) | 186 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 124, 671, 1319, 1385, 1519, 2360, 3114, 3308, 3432 |
| BstNI | CCWGG | 4 cut(s) | 76, 343, 2390, 2589 |
| BstNSI | RCATGY | 5 cut(s) | 1064, 1569, 2542, 2881, 2930 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2492 |
| BstPI | GGTNACC | 1 cut(s) | 2899 |
| BstSCI | CCNGG | 6 cut(s) | 74, 219, 220, 341, 2388, 2587 |
| BstSFI | CTRYAG | 3 cut(s) | 1683, 2421, 3513 |
| BstSLI | GKGCMC | 1 cut(s) | 1141 |
| BstSNI | TACGTA | 1 cut(s) | 2190 |
| BstV2I | GAAGAC | 1 cut(s) | 2880 |
| BstX2I | RGATCY | 5 cut(s) | 1035, 1192, 2789, 3189, 3219 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2638, 3200 |
| BstYI | RGATCY | 5 cut(s) | 1035, 1192, 2789, 3189, 3219 |
| BstZ17I | GTATAC | 2 cut(s) | 1600, 3463 |
| BstZI | CGGCCG | 1 cut(s) | 183 |
| BsuI | GTATCC | 2 cut(s) | 2248, 2793 |
| BsuRI | GGCC | 8 cut(s) | 80, 185, 225, 1341, 1496, 1863, 3108, 3147 |
| BtgI | CCRYGG | 8 cut(s) | 1502, 2310, 2428, 2637, 2882, 3199, 3304, 3507 |
| BtgZI | GCGATG | 1 cut(s) | 2106 |
| BtsCI | GGATG | 9 cut(s) | 313, 388, 738, 1258, 1536, 2116, 2572, 2653, 3034 |
| BtsI | GCAGTG | 1 cut(s) | 1529 |
| BtsIMutI | CAGTG | 4 cut(s) | 1529, 2258, 2719, 2856 |
| BveI | ACCTGC | 1 cut(s) | 1311 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3166 |
| CfoI | GCGC | 3 cut(s) | 120, 2656, 3311 |
| Cfr13I | GGNCC | 6 cut(s) | 78, 223, 1202, 2487, 3146, 3209 |
| Cfr9I | CCCGGG | 1 cut(s) | 220 |
| CseI | GACGC | 3 cut(s) | 80, 1425, 2501 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1491, 1526 |
| DraIII | CACNNNGTG | 1 cut(s) | 2687 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1435 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2952 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1435 |
| EaeI | YGGCCR | 4 cut(s) | 183, 1494, 1861, 3106 |
| EagI | CGGCCG | 1 cut(s) | 183 |
| Eam1104I | CTCTTC | 6 cut(s) | 96, 795, 2010, 2073, 3063, 3494 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2952 |
| EarI | CTCTTC | 6 cut(s) | 96, 795, 2010, 2073, 3063, 3494 |
| EciI | GGCGGA | 2 cut(s) | 689, 707 |
| Ecl136II | GAGCTC | 2 cut(s) | 836, 3056 |
| EclXI | CGGCCG | 1 cut(s) | 183 |
| Eco105I | TACGTA | 1 cut(s) | 2190 |
| Eco130I | CCWWGG | 6 cut(s) | 2310, 2637, 2882, 3142, 3304, 3507 |
| Eco24I | GRGCYC | 3 cut(s) | 15, 838, 3058 |
| Eco31I | GGTCTC | 2 cut(s) | 2582, 3086 |
| Eco32I | GATATC | 2 cut(s) | 190, 1825 |
| Eco47I | GGWCC | 3 cut(s) | 1202, 2487, 3209 |
| Eco52I | CGGCCG | 1 cut(s) | 183 |
| Eco53kI | GAGCTC | 2 cut(s) | 836, 3056 |
| Eco57I | CTGAAG | 5 cut(s) | 1575, 1824, 1974, 2097, 3188 |
| Eco88I | CYCGRG | 4 cut(s) | 14, 203, 220, 839 |
| Eco91I | GGTNACC | 1 cut(s) | 2899 |
| EcoICRI | GAGCTC | 2 cut(s) | 836, 3056 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1043 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2487 |
| EcoO65I | GGTNACC | 1 cut(s) | 2899 |
| EcoRI | GAATTC | 2 cut(s) | 511, 3412 |
| EcoRII | CCWGG | 4 cut(s) | 74, 341, 2388, 2587 |
| EcoRV | GATATC | 2 cut(s) | 190, 1825 |
| EcoT14I | CCWWGG | 6 cut(s) | 2310, 2637, 2882, 3142, 3304, 3507 |
| EcoT22I | ATGCAT | 2 cut(s) | 1933, 3355 |
| EcoT38I | GRGCYC | 3 cut(s) | 15, 838, 3058 |
| ErhI | CCWWGG | 6 cut(s) | 2310, 2637, 2882, 3142, 3304, 3507 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1023, 1055, 3473, 3505 |
| FaqI | GGGAC | 6 cut(s) | 682, 1188, 2480, 2500, 2860, 3258 |
| FauI | CCCGC | 2 cut(s) | 3198, 3556 |
| FauNDI | CATATG | 3 cut(s) | 550, 1432, 3174 |
| FbaI | TGATCA | 1 cut(s) | 553 |
| FblI | GTMKAC | 4 cut(s) | 630, 1599, 2830, 3462 |
| FokI | GGATG | 9 cut(s) | 320, 395, 745, 1265, 1543, 2103, 2579, 2660, 3041 |
| FriOI | GRGCYC | 3 cut(s) | 15, 838, 3058 |
| FspBI | CTAG | 5 cut(s) | 489, 747, 1248, 1335, 2595 |
| GlaI | GCGC | 3 cut(s) | 119, 2655, 3310 |
| GsaI | CCCAGC | 1 cut(s) | 539 |
| GsuI | CTGGAG | 1 cut(s) | 1422 |
| HaeII | RGCGCY | 1 cut(s) | 3312 |
| HaeIII | GGCC | 8 cut(s) | 80, 185, 225, 1341, 1496, 1863, 3108, 3147 |
| HapII | CCGG | 3 cut(s) | 221, 2440, 2797 |
| HgaI | GACGC | 3 cut(s) | 80, 1425, 2501 |
| HhaI | GCGC | 3 cut(s) | 120, 2656, 3311 |
| Hin1I | GRCGYC | 2 cut(s) | 72, 2512 |
| Hin6I | GCGC | 3 cut(s) | 118, 2654, 3309 |
| HinP1I | GCGC | 3 cut(s) | 118, 2654, 3309 |
| HincII | GTYRAC | 1 cut(s) | 1245 |
| HindII | GTYRAC | 1 cut(s) | 1245 |
| HindIII | AAGCTT | 2 cut(s) | 1095, 2701 |
| HpaII | CCGG | 3 cut(s) | 221, 2440, 2797 |
| HphI | GGTGA | 9 cut(s) | 421, 431, 439, 1771, 2224, 2618, 2797, 2825, 2893 |
| Hpy99I | CGWCG | 7 cut(s) | 26, 44, 47, 50, 143, 176, 1788 |
| HpyCH4III | ACNGT | 8 cut(s) | 994, 1134, 1609, 2429, 2714, 2851, 2890, 3037 |
| HpyCH4IV | ACGT | 6 cut(s) | 359, 500, 633, 669, 2182, 2189 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 124, 671, 1319, 1385, 1519, 2360, 3114, 3308, 3432 |
| HpySE526I | ACGT | 6 cut(s) | 359, 500, 633, 669, 2182, 2189 |
| Hsp92I | GRCGYC | 2 cut(s) | 72, 2512 |
| HspAI | GCGC | 3 cut(s) | 118, 2654, 3309 |
| KflI | GGGWCCC | 1 cut(s) | 2487 |
| Kpn2I | TCCGGA | 1 cut(s) | 2796 |
| Ksp22I | TGATCA | 1 cut(s) | 553 |
| LguI | GCTCTTC | 2 cut(s) | 3063, 3494 |
| LmnI | GCTCC | 4 cut(s) | 10, 2314, 3283, 3572 |
| LweI | GCATC | 5 cut(s) | 723, 2326, 2355, 3001, 3340 |
| MaeI | CTAG | 5 cut(s) | 489, 747, 1248, 1335, 2595 |
| MaeII | ACGT | 6 cut(s) | 359, 500, 633, 669, 2182, 2189 |
| MaeIII | GTNAC | 8 cut(s) | 427, 1407, 1446, 2230, 2296, 2687, 2899, 3031 |
| MbiI | CCGCTC | 1 cut(s) | 2457 |
| MflI | RGATCY | 5 cut(s) | 1035, 1192, 2789, 3189, 3219 |
| MhlI | GDGCHC | 5 cut(s) | 15, 620, 838, 1141, 3058 |
| MlsI | TGGCCA | 2 cut(s) | 1496, 3108 |
| MluNI | TGGCCA | 2 cut(s) | 1496, 3108 |
| MlyI | GAGTC | 5 cut(s) | 125, 188, 215, 311, 704 |
| MmeI | TCCRAC | 4 cut(s) | 285, 1051, 1127, 2544 |
| Mox20I | TGGCCA | 2 cut(s) | 1496, 3108 |
| Mph1103I | ATGCAT | 2 cut(s) | 1933, 3355 |
| MroI | TCCGGA | 1 cut(s) | 2796 |
| MroXI | GAANNNNTTC | 2 cut(s) | 591, 1053 |
| MscI | TGGCCA | 2 cut(s) | 1496, 3108 |
| MseI | TTAA | 9 cut(s) | 261, 527, 1299, 1418, 1716, 1769, 1833, 2046, 3386 |
| MslI | CAYNNNNRTG | 7 cut(s) | 417, 1065, 2636, 3066, 3198, 3369, 3421 |
| Msp20I | TGGCCA | 2 cut(s) | 1496, 3108 |
| MspA1I | CMGCKG | 5 cut(s) | 1388, 1544, 1619, 2342, 3066 |
| MspI | CCGG | 3 cut(s) | 221, 2440, 2797 |
| MspR9I | CCNGG | 6 cut(s) | 76, 221, 222, 343, 2390, 2589 |
| Mva1269I | GAATGC | 1 cut(s) | 3531 |
| MvaI | CCWGG | 4 cut(s) | 76, 343, 2390, 2589 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 124, 671, 1319, 1385, 1519, 2360, 3114, 3308, 3432 |
| NciI | CCSGG | 2 cut(s) | 221, 222 |
| NcoI | CCATGG | 5 cut(s) | 2310, 2637, 2882, 3304, 3507 |
| NdeI | CATATG | 3 cut(s) | 550, 1432, 3174 |
| NlaIV | GGNNCC | 8 cut(s) | 12, 471, 1204, 2488, 2489, 3148, 3210, 3574 |
| NmeAIII | GCCGAG | 1 cut(s) | 268 |
| NmuCI | GTSAC | 8 cut(s) | 427, 1407, 1446, 2230, 2296, 2687, 2899, 3031 |
| NsiI | ATGCAT | 2 cut(s) | 1933, 3355 |
| NspI | RCATGY | 5 cut(s) | 1064, 1569, 2542, 2881, 2930 |
| NspV | TTCGAA | 2 cut(s) | 99, 1225 |
| OliI | CACNNNNGTG | 1 cut(s) | 3066 |
| PaeI | GCATGC | 1 cut(s) | 2542 |
| PciI | ACATGT | 1 cut(s) | 1060 |
| PciSI | GCTCTTC | 2 cut(s) | 3063, 3494 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 12, 45, 78, 135 |
| PctI | GAATGC | 1 cut(s) | 3531 |
| PdmI | GAANNNNTTC | 2 cut(s) | 591, 1053 |
| PfeI | GAWTC | 6 cut(s) | 196, 943, 1582, 2396, 2410, 2433 |
| PflFI | GACNNNGTC | 1 cut(s) | 301 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1064, 2810 |
| PfoI | TCCNGGA | 1 cut(s) | 2587 |
| PleI | GAGTC | 5 cut(s) | 125, 187, 214, 310, 703 |
| PpsI | GAGTC | 5 cut(s) | 125, 187, 214, 310, 703 |
| Ppu21I | YACGTR | 4 cut(s) | 634, 670, 2183, 2190 |
| PpuMI | RGGWCCY | 1 cut(s) | 2487 |
| PscI | ACATGT | 1 cut(s) | 1060 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2492 |
| PshBI | ATTAAT | 1 cut(s) | 2046 |
| PsiI | TTATAA | 2 cut(s) | 575, 2385 |
| Psp124BI | GAGCTC | 2 cut(s) | 838, 3058 |
| Psp5II | RGGWCCY | 1 cut(s) | 2487 |
| Psp6I | CCWGG | 4 cut(s) | 74, 341, 2388, 2587 |
| PspEI | GGTNACC | 1 cut(s) | 2899 |
| PspFI | CCCAGC | 1 cut(s) | 535 |
| PspGI | CCWGG | 4 cut(s) | 74, 341, 2388, 2587 |
| PspN4I | GGNNCC | 8 cut(s) | 12, 471, 1204, 2488, 2489, 3148, 3210, 3574 |
| PspPI | GGNCC | 6 cut(s) | 78, 223, 1202, 2487, 3146, 3209 |
| PspPPI | RGGWCCY | 1 cut(s) | 2487 |
| PstI | CTGCAG | 1 cut(s) | 1687 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3166 |
| PsuI | RGATCY | 5 cut(s) | 1035, 1192, 2789, 3189, 3219 |
| PsyI | GACNNNGTC | 1 cut(s) | 301 |
| PvuII | CAGCTG | 5 cut(s) | 1388, 1544, 1619, 2342, 3066 |
| RseI | CAYNNNNRTG | 7 cut(s) | 417, 1065, 2636, 3066, 3198, 3369, 3421 |
| SacI | GAGCTC | 2 cut(s) | 838, 3058 |
| SapI | GCTCTTC | 2 cut(s) | 3063, 3494 |
| SaqAI | TTAA | 9 cut(s) | 261, 527, 1299, 1418, 1716, 1769, 1833, 2046, 3386 |
| Sau96I | GGNCC | 6 cut(s) | 78, 223, 1202, 2487, 3146, 3209 |
| SchI | GAGTC | 5 cut(s) | 125, 188, 215, 311, 704 |
| ScrFI | CCNGG | 6 cut(s) | 76, 221, 222, 343, 2390, 2589 |
| SduI | GDGCHC | 5 cut(s) | 15, 620, 838, 1141, 3058 |
| SfaNI | GCATC | 5 cut(s) | 723, 2326, 2355, 3001, 3340 |
| SfcI | CTRYAG | 3 cut(s) | 1683, 2421, 3513 |
| SfuI | TTCGAA | 2 cut(s) | 99, 1225 |
| SinI | GGWCC | 3 cut(s) | 1202, 2487, 3209 |
| SmaI | CCCGGG | 1 cut(s) | 222 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 417, 1065, 2636, 3066, 3198, 3369, 3421 |
| SmlI | CTYRAG | 2 cut(s) | 1453, 3404 |
| SmoI | CTYRAG | 2 cut(s) | 1453, 3404 |
| SnaBI | TACGTA | 1 cut(s) | 2190 |
| SpeI | ACTAGT | 2 cut(s) | 746, 1334 |
| SphI | GCATGC | 1 cut(s) | 2542 |
| SspI | AATATT | 4 cut(s) | 1349, 1632, 2448, 3046 |
| SspMI | CTAG | 5 cut(s) | 489, 747, 1248, 1335, 2595 |
| SstI | GAGCTC | 2 cut(s) | 838, 3058 |
| StyD4I | CCNGG | 6 cut(s) | 74, 219, 220, 341, 2388, 2587 |
| StyI | CCWWGG | 6 cut(s) | 2310, 2637, 2882, 3142, 3304, 3507 |
| TaaI | ACNGT | 8 cut(s) | 994, 1134, 1609, 2429, 2714, 2851, 2890, 3037 |
| TaiI | ACGT | 6 cut(s) | 362, 503, 636, 672, 2185, 2192 |
| TaqII | GACCGA | 4 cut(s) | 257, 314, 474, 672 |
| TatI | WGTACW | 5 cut(s) | 33, 716, 2056, 2274, 3214 |
| TauI | GCSGC | 2 cut(s) | 2545, 3124 |
| TfiI | GAWTC | 6 cut(s) | 196, 943, 1582, 2396, 2410, 2433 |
| Tru1I | TTAA | 9 cut(s) | 261, 527, 1299, 1418, 1716, 1769, 1833, 2046, 3386 |
| Tru9I | TTAA | 9 cut(s) | 261, 527, 1299, 1418, 1716, 1769, 1833, 2046, 3386 |
| TscAI | CASTG | 4 cut(s) | 1529, 2265, 2719, 2856 |
| TseFI | GTSAC | 8 cut(s) | 427, 1407, 1446, 2230, 2296, 2687, 2899, 3031 |
| Tsp45I | GTSAC | 8 cut(s) | 427, 1407, 1446, 2230, 2296, 2687, 2899, 3031 |
| TspGWI | ACGGA | 3 cut(s) | 1817, 2024, 3041 |
| TspMI | CCCGGG | 1 cut(s) | 220 |
| TspRI | CASTG | 4 cut(s) | 1529, 2265, 2719, 2856 |
| Tth111I | GACNNNGTC | 1 cut(s) | 301 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1064, 2810 |
| VneI | GTGCAC | 1 cut(s) | 1137 |
| VpaK11BI | GGWCC | 3 cut(s) | 1202, 2487, 3209 |
| VspI | ATTAAT | 1 cut(s) | 2046 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1043 |
| XceI | RCATGY | 5 cut(s) | 1064, 1569, 2542, 2881, 2930 |
| XmaI | CCCGGG | 1 cut(s) | 220 |
| XmiI | GTMKAC | 4 cut(s) | 630, 1599, 2830, 3462 |
| XmnI | GAANNNNTTC | 2 cut(s) | 591, 1053 |
| XspI | CTAG | 5 cut(s) | 489, 747, 1248, 1335, 2595 |
| Zsp2I | ATGCAT | 2 cut(s) | 1933, 3355 |