Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5033448 .. 5040876

Gene Structure 7429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG059600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3561 bp

ATGGAAGAGGAGCCGGAGTACGAAGAGCAGTACAACGAGGAGGACGACGAAGATGAGATAACGCAGGAAGATGCGTGGGCTGTGATTTCAGCCTATTTCGAAGAGAAGGGTTTAGTGAGGCAGCAGCTGGACTCGTTCGATGAGTTCATTCAGAACACAATGCAGGAGATTGTCGACGAGGCCGCCGATATCGAAATCCGACCCGAATCGCAGCATAACCCGGGTCACCAGCCCGATTTCGCTGAGACTATATACAAAATCAGCTTCGGTCAGATTTATCTGAGTAAGCCTATGATGACTGAGTCGGATGGTGAGACTGCAACGCTGTTTCCGAAAGCTGCGAGGTTGCGAAACTTGACCTACTCGGCGCCTTTGTATGTGGATGTGACCAAGAGGGTTATAAAGAAAGGACATGATGGTGAAGAAGTTACTGAGACTCAGGATTTCACCAAAGTGTTCATTGGAAAGGTCCCAATTATGCTCCGTTCGAGTTATTGTACATTGTATCAGAATTCGGAGAAAGACTTGACGGAGCTGGGGGAGTGTCCTTATGACCAAGGCGGGTATTTCATTATTAATGGGAGTGAGAAGGTGTTGATTGCTCAGGAGAAGATGAGCACGAACCACGTCTATGTCTTCAAGAAGAGGCAGCCTAATAAGTACGCATATGTTGGGGAGGTACGGTCTATGGCGGAGTCCCAAAACCGACCCCCCAGCACCATGTTCGTTCGTATGCTTTCCCGGACGAGCTCCAAAGGGGGTTCTTCAGGACAATACATTCGTGCTACTCTTCCGTATATTCGATCTGAGATTCCCATTATTATTGTCTTCCGGGCTCTTGGGTTTGTGGCAGACAAAGACATTTTGGAGCACATATGTTATGATTTTTCAGATACGCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTTATTCAGAATCAACAGGTGGCTCTAGATTATATTGGTAAAAGAGGTGCAACAGCTGGGGTACCTAGAGACAAGAGGATAAGGTATGCAAGAGATATTCTTCAAAAGGAAATGCTTCCACATGTTGGTGTCGGGGAGTTTTGTGAGACCAAGAAAGCATATTATTTCGGATACATCATTCACAGGCTTCTACTGTGTGCACTTGGTCGGAGAGCAGAAGATGATAGGGATCACTATGGAAATAAGAGGCTAGATCTTGCTGGCCCCTTACTCGGAAGCTTGTTTAGATCGCTATTCAGGAAGCTGACCAAGGATGTTAAAGGTTATGTTCAGAAGTGCGTTGATAATGGAAAGGATGTGAACCTGCAATTTGCAATTAAAGCAAAAACCATTACCAGTGGTCTCAAATATTCACTTGCTACTGGGAACTGGGGGCAAGCAAATGCAGCTGGGACAAGGGCTGGAGTGTCGCAGGTTTTAAATCGTTTGACATATGCATCTACATTATCACACTTGCGAAGGCTAAATTCTCCCATAGGGCGTGAAGGGAAATTGGCTAAACCCCGGCAGTTGCACAACTCACAGTGGGGAATGATGTGTCCCGCTGAGACACCTGAAGGGCAGGCATGCGGACTTGTAAAGAACCTTGCATTGATGGTCTACATAACTGTGGGATCAGCTGCATATCCAATCTTAGAATTTTTAGAAGAATGGGGTACAGAAAATTTTGAGGAAATTTCCCCTGCTGTTATTCCCCAAGCCACAAAGATTTTTGTTAATGGCTGCTGGGTTGGCATACATCGTGATCCTGAAATGTTGGTGAGAACATTAAGGAAGCTAAGGCGGCGGGTGGATGTCAATACTGAAGTTGGGGTTGTAAGAGATATCCGTCTGAAAGAATTGCGGATATATACTGATTATGGTCGTTGCAGTCGTCCATTATTCATTGTGGACAAGCAAAGGCTGCTTATAAAGAAGAAAGATATTCATGCATTGCAGCAGAGGGAAAACCCTGAAGACGGTGGTTGGCATGATCTCGTGGCAAAAGGATTTATAGAATATATTGACACTGAAGAAGAGGAGACCACTATGATTTCGATGACAATTAATGATCTTGTACAAGCAAGGCTCAATCCTGAGGAAGCATATTCTGACACTTACACTCATTGTGAAATTCACCCGTCACTTATATTGGGTGTTTGTGCTTCAATTATACCATTTCCTGATCATAATCAGTCTCCACGTAATACATATCAATCTGCCATGGGAAAGCAAGCTATGGGAATTTATGTCACCAATTATCAGTTCCGAATGGATACACTGGCTTATGTTCTGTACTACCCTCAGAAGCCGCTTGTCACTACACGAGCCATGGAGCATCTTCACTTCCGGCAACTTCCAGCTGGAATTAATGCCATTGTTGCCATTTCTTGCTACTCTGGTTATAATCAGGAAGATTCTGTCATTATGAATCAATCCTCTATAGATCGTGGATTTTTCCGGTCACTGTTCTTCCGCTCCTATAGGGATGAGGAAAAAAAGATGGGGACCCTTGTCAAAGAAGATTTTGGACGTCCAGACAGAGCAAATACGATGGGTATGCGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCACCTCCTGGAACCAGGGTTTCAGGTGAGGATGTTATCATAGGGAAGACCACTCCCATTGCTCCAGAGGAGGCTCAGGGGCAAGCTGCTTCACGTTACTCACGACGTGACCATAGTATAAGCTTACGGCACAGTGAAACTGGGATTGTGGACCAGGTTTTATTGACTACCAATGCCGATGGGTTGAGGTTTGTGAAAGTGAGGGTGAGGTCTGTTCGAATTCCACAGATTGGGGATAAATTTAGCAGTAGGCATGGACAGAAAGGGACGGTGGGTATGACATATACACAAGAAGACATGCCGTGGACTGTAGAAGGAGTCACCCCTGATATTATTGTGAACCCTCATGCTATTCCTTCCCGAATGACCATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTTGCAGCACACATGGGAAAGGAAGGAGATGCTACTCCCTTTACGGATGTGACTGTGGACAATATTAGCAAAGCTCTTCACAAATGTGGGTATCAAATGCGGGGATTTGAGACCATGTATAATGGTCACACTGGTCGGCGACTGAGTGCAATGATATTCCTTGGCCCTACATATTACCAGAGATTGAAGCATATGGTTGATGATAAGATCCATTCACGTGGTCGGGGTCCTGTACAGATTCTCACAAGGCAGCCTGCTGAGGGACGGTCTCGTGATGGTGGTTTACGATTTGGAGAGATGGAACGAGATTGCATGATTGCCCATGGTGCTGCTCACTTTCTTAAAGAGAGATTGTTTGATCAGAGTGATGCCTATAGGGTTCATGTCTGCGAGCGTTGTGGTTTAATAGCTATTGCAAATCTCAAGAAGAATTCATTCGAGTGCAGAGGTTGTAAGAACAAAACTGATATTGTTCAGGTGAGTCTGTCTGGTTTATGGTCTAGTCTGTGCCTTTCTCTCTCTGCATACATGGATGTCCTACCCTTCAAACATTGCTGTGATTTTGCGATCAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1186

Amino Acids

134.39

Weight (kDa)

6.91

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	37 - 446	1.1e-78	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	207 - 398	4.6e-55	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	471 - 535	9.9e-25	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	570 - 631	8.6e-24	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	656 - 707	6.5e-18	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	714 - 1085	4.9e-142	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1087 - 1157	2.9e-24	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21710
fragaria_vesca	FvH4_3g09270
malus_domestica	MD05G1313100.v1.1 MD10G1295300.v1.1
prunus_persica	Prupe.4G046700_v2.0.a1
pyrus_communis	pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720
rosa_chinensis	RchiOBHm_Chr5g0008301
rosa_laevigata	RLG00000031560
rosa_multiflora	Rmu_sc0021840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068160
rosa_rugosa	Rorug04G0434800
rosa_samantha	Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600
rosa_wichuraiana	Rw5G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	401, 1910, 2385
AatII	GACGTC	1 cut(s)	2515
Acc36I	ACCTGC	2 cut(s)	1311, 1402
Acc65I	GGTACC	1 cut(s)	1000
AccB1I	GGYRCC	2 cut(s)	367, 1000
AccB7I	CCANNNNNTGG	2 cut(s)	1064, 2810
AccBSI	CCGCTC	1 cut(s)	2457
AccI	GTMKAC	2 cut(s)	174, 1599
AclWI	GGATC	4 cut(s)	1176, 1621, 1739, 3184
AcuI	CTGAAG	5 cut(s)	750, 1575, 1824, 1974, 2031
AcvI	CACGTG	1 cut(s)	3200
AcyI	GRCGYC	2 cut(s)	368, 2512
AdeI	CACNNNGTG	1 cut(s)	2687
AfiI	CCNNNNNNNGG	5 cut(s)	1064, 1211, 1958, 2810, 3242
AflIII	ACRYGT	1 cut(s)	1060
AgsI	TTSAA	5 cut(s)	640, 1043, 2148, 3169, 3529
AhdI	GACNNNNNGTC	1 cut(s)	2952
AjiI	CACGTC	2 cut(s)	628, 2687
AjnI	CCWGG	4 cut(s)	924, 2587, 2594, 2733
AjuI	GAANNNNNNNTTGG	2 cut(s)	2228, 2260
AleI	CACNNNNGTG	2 cut(s)	452, 3066
Alw21I	GWGCWC	4 cut(s)	620, 752, 873, 1141
Alw44I	GTGCAC	1 cut(s)	1137
AlwI	GGATC	4 cut(s)	1176, 1621, 1739, 3184
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	3 cut(s)	180, 1201, 3145
ApaLI	GTGCAC	1 cut(s)	1137
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AseI	ATTAAT	3 cut(s)	576, 2046, 2349
Asp700I	GAANNNNTTC	2 cut(s)	1053, 3416
Asp718I	GGTACC	1 cut(s)	1000
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
AsuC2I	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
AsuII	TTCGAA	2 cut(s)	99, 2797
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	4 cut(s)	469, 2487, 2731, 3209
AxyI	CCTNAGG	1 cut(s)	2076
BaeGI	GKGCMC	1 cut(s)	1141
BanI	GGYRCC	2 cut(s)	367, 1000
BanII	GRGCYC	2 cut(s)	752, 838
BauI	CACGAG	3 cut(s)	1976, 2304, 3252
BbrPI	CACGTG	1 cut(s)	3200
BbsI	GAAGAC	5 cut(s)	628, 820, 1962, 2633, 2880
Bbv12I	GWGCWC	4 cut(s)	620, 752, 873, 1141
BbvCI	CCTCAGC	1 cut(s)	3240
BceAI	ACGGC	2 cut(s)	2723, 2866
BcgI	CGANNNNNNTGC	4 cut(s)	706, 740, 2521, 2555
BciT130I	CCWGG	4 cut(s)	926, 2589, 2596, 2735
BciVI	GTATCC	2 cut(s)	1103, 2248
BclI	TGATCA	2 cut(s)	2164, 3340
BcnI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
BfaI	CTAG	4 cut(s)	965, 1005, 1190, 3483
BfmI	CTRYAG	4 cut(s)	2421, 2461, 2889, 3355
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	2 cut(s)	1311, 1402
BfuI	GTATCC	2 cut(s)	1103, 2248
BglII	AGATCT	1 cut(s)	1192
Bme1390I	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
Bme18I	GGWCC	4 cut(s)	469, 2487, 2731, 3209
BmeRI	GACNNNNNGTC	1 cut(s)	2952
BmeT110I	CYCGRG	1 cut(s)	220
BmgBI	CACGTC	2 cut(s)	628, 2687
BmgT120I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
BmiI	GGNNCC	9 cut(s)	12, 369, 471, 1002, 1204, 2488, 2489, 2593, 3210
BmrFI	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
BmrI	ACTGGG	3 cut(s)	1371, 1378, 2730
BmsI	GCATC	5 cut(s)	61, 1445, 2326, 3001, 3340
BmuI	ACTGGG	3 cut(s)	1371, 1378, 2730
BoxI	GACNNNNGTC	1 cut(s)	2492
BpiI	GAAGAC	5 cut(s)	628, 820, 1962, 2633, 2880
BpmI	CTGGAG	2 cut(s)	1422, 2628
Bpu10I	CCTNAGC	4 cut(s)	603, 1778, 2655, 3240
Bpu14I	TTCGAA	2 cut(s)	99, 2797
BpuEI	CTTGAG	1 cut(s)	3389
BpuMI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
BsaAI	YACGTR	2 cut(s)	2183, 3200
BsaBI	GATNNNNATC	2 cut(s)	1167, 2169
BsaHI	GRCGYC	2 cut(s)	368, 2512
BsaI	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
BsaWI	WCCGGW	1 cut(s)	2439
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 668, 698
Bsc4I	CCNNNNNNNGG	5 cut(s)	1064, 1211, 1958, 2810, 3242
Bse1I	ACTGG	6 cut(s)	1335, 1366, 1373, 2265, 2725, 3118
Bse21I	CCTNAGG	1 cut(s)	2076
Bse3DI	GCAATG	4 cut(s)	1931, 2637, 3138, 3532
Bse8I	GATNNNNATC	2 cut(s)	1167, 2169
BseBI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
BseJI	GATNNNNATC	2 cut(s)	1167, 2169
BseLI	CCNNNNNNNGG	5 cut(s)	1064, 1211, 1958, 2810, 3242
BseMI	GCAATG	4 cut(s)	1931, 2637, 3138, 3532
BseNI	ACTGG	6 cut(s)	1335, 1366, 1373, 2265, 2725, 3118
BseRI	GAGGAG	4 cut(s)	23, 53, 2033, 2663
BseSI	GKGCMC	1 cut(s)	1141
BseYI	CCCAGC	5 cut(s)	535, 713, 995, 1388, 1725
BsgI	GTGCAG	1 cut(s)	3445
BshFI	GGCC	3 cut(s)	182, 1203, 3147
BshNI	GGYRCC	2 cut(s)	367, 1000
BsiHKAI	GWGCWC	4 cut(s)	620, 752, 873, 1141
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
BslFI	GGGAC	7 cut(s)	455, 682, 1405, 1524, 2500, 2860, 3258
BslI	CCNNNNNNNGG	5 cut(s)	1064, 1211, 1958, 2810, 3242
BsmFI	GGGAC	7 cut(s)	455, 682, 1405, 1524, 2500, 2860, 3258
BsnI	GGCC	3 cut(s)	182, 1203, 3147
Bso31I	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
BsoBI	CYCGRG	1 cut(s)	220
Bsp119I	TTCGAA	2 cut(s)	99, 2797
Bsp1286I	GDGCHC	5 cut(s)	620, 752, 838, 873, 1141
Bsp1407I	TGTACA	3 cut(s)	497, 2056, 3214
Bsp19I	CCATGG	3 cut(s)	2202, 2310, 3304
BspANI	GGCC	3 cut(s)	182, 1203, 3147
BspLI	GGNNCC	9 cut(s)	12, 369, 471, 1002, 1204, 2488, 2489, 2593, 3210
BspMI	ACCTGC	2 cut(s)	1311, 1402
BspPI	GGATC	4 cut(s)	1176, 1621, 1739, 3184
BspQI	GCTCTTC	2 cut(s)	18, 3063
BspT104I	TTCGAA	2 cut(s)	99, 2797
BspT107I	GGYRCC	2 cut(s)	367, 1000
BspTNI	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
BsrBI	CCGCTC	1 cut(s)	2457
BsrDI	GCAATG	4 cut(s)	1931, 2637, 3138, 3532
BsrGI	TGTACA	3 cut(s)	497, 2056, 3214
BsrI	ACTGG	6 cut(s)	1335, 1366, 1373, 2265, 2725, 3118
BssNI	GRCGYC	2 cut(s)	368, 2512
BssSI	CACGAG	3 cut(s)	1976, 2304, 3252
BssT1I	CCWWGG	6 cut(s)	556, 1248, 2202, 2310, 3142, 3304
Bst2BI	CACGAG	3 cut(s)	1976, 2304, 3252
Bst2UI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
Bst6I	CTCTTC	6 cut(s)	18, 96, 638, 795, 2010, 3063
BstACI	GRCGYC	2 cut(s)	368, 2512
BstAPI	GCANNNNNTGC	1 cut(s)	1903
BstAUI	TGTACA	3 cut(s)	497, 2056, 3214
BstBAI	YACGTR	2 cut(s)	2183, 3200
BstBI	TTCGAA	2 cut(s)	99, 2797
BstC8I	GCNNGC	8 cut(s)	1201, 1377, 1563, 1567, 2214, 2664, 3237, 3374
BstDSI	CCRYGG	4 cut(s)	2202, 2310, 2882, 3304
BstEII	GGTNACC	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	7 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308
BstNI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
BstNSI	RCATGY	3 cut(s)	1064, 1569, 2881
BstPAI	GACNNNNGTC	1 cut(s)	2492
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	9 cut(s)	219, 220, 740, 831, 924, 1502, 2587, 2594, 2733
BstSFI	CTRYAG	4 cut(s)	2421, 2461, 2889, 3355
BstSLI	GKGCMC	1 cut(s)	1141
BstV2I	GAAGAC	5 cut(s)	628, 820, 1962, 2633, 2880
BstX2I	RGATCY	2 cut(s)	1192, 3189
BstXI	CCANNNNNNTGG	1 cut(s)	3200
BstYI	RGATCY	2 cut(s)	1192, 3189
Bsu36I	CCTNAGG	1 cut(s)	2076
BsuI	GTATCC	2 cut(s)	1103, 2248
BsuRI	GGCC	3 cut(s)	182, 1203, 3147
BtgI	CCRYGG	4 cut(s)	2202, 2310, 2882, 3304
BtrI	CACGTC	2 cut(s)	628, 2687
BtsIMutI	CAGTG	7 cut(s)	1342, 1529, 2007, 2258, 2444, 2719, 3111
BveI	ACCTGC	2 cut(s)	1311, 1402
Cac8I	GCNNGC	8 cut(s)	1201, 1377, 1563, 1567, 2214, 2664, 3237, 3374
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
Cfr9I	CCCGGG	1 cut(s)	220
CsiI	ACCWGGT	1 cut(s)	2733
CspCI	CAANNNNNGTGG	2 cut(s)	2620, 2655
DinI	GGCGCC	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	1419
DraIII	CACNNNGTG	1 cut(s)	2687
DriI	GACNNNNNGTC	1 cut(s)	2952
Eam1104I	CTCTTC	6 cut(s)	18, 96, 638, 795, 2010, 3063
Eam1105I	GACNNNNNGTC	1 cut(s)	2952
EarI	CTCTTC	6 cut(s)	18, 96, 638, 795, 2010, 3063
EciI	GGCGGA	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	6 cut(s)	556, 1248, 2202, 2310, 3142, 3304
Eco24I	GRGCYC	2 cut(s)	752, 838
Eco31I	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
Eco32I	GATATC	2 cut(s)	190, 1825
Eco47I	GGWCC	4 cut(s)	469, 2487, 2731, 3209
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	5 cut(s)	750, 1575, 1824, 1974, 2031
Eco72I	CACGTG	1 cut(s)	3200
Eco81I	CCTNAGG	1 cut(s)	2076
Eco88I	CYCGRG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	750
EcoO109I	RGGNCCY	3 cut(s)	469, 2487, 3209
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	3 cut(s)	511, 2799, 3412
EcoRII	CCWGG	4 cut(s)	924, 2587, 2594, 2733
EcoRV	GATATC	2 cut(s)	190, 1825
EcoT14I	CCWWGG	6 cut(s)	556, 1248, 2202, 2310, 3142, 3304
EcoT22I	ATGCAT	2 cut(s)	1438, 1933
EcoT38I	GRGCYC	2 cut(s)	752, 838
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
ErhI	CCWWGG	6 cut(s)	556, 1248, 2202, 2310, 3142, 3304
FaqI	GGGAC	7 cut(s)	455, 682, 1405, 1524, 2500, 2860, 3258
FauI	CCCGC	4 cut(s)	554, 1549, 1779, 3075
FauNDI	CATATG	4 cut(s)	667, 875, 1432, 3174
FbaI	TGATCA	2 cut(s)	2164, 3340
FblI	GTMKAC	2 cut(s)	174, 1599
FriOI	GRGCYC	2 cut(s)	752, 838
FspBI	CTAG	4 cut(s)	965, 1005, 1190, 3483
GlaI	GCGC	1 cut(s)	369
GsaI	CCCAGC	5 cut(s)	539, 717, 999, 1392, 1729
GsuI	CTGGAG	2 cut(s)	1422, 2628
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	182, 1203, 3147
HapII	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	2 cut(s)	368, 2512
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	2 cut(s)	1216, 2701
HpaII	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
Hpy99I	CGWCG	3 cut(s)	50, 179, 2688
HpyCH4IV	ACGT	6 cut(s)	627, 2182, 2512, 2674, 2686, 3199
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308
HpySE526I	ACGT	6 cut(s)	627, 2182, 2512, 2674, 2686, 3199
Hsp92I	GRCGYC	2 cut(s)	368, 2512
HspAI	GCGC	1 cut(s)	368
KasI	GGCGCC	1 cut(s)	367
KflI	GGGWCCC	1 cut(s)	2487
KpnI	GGTACC	1 cut(s)	1004
Ksp22I	TGATCA	2 cut(s)	2164, 3340
LguI	GCTCTTC	2 cut(s)	18, 3063
LmnI	GCTCC	8 cut(s)	10, 486, 532, 755, 868, 2314, 2462, 2647
LweI	GCATC	5 cut(s)	61, 1445, 2326, 3001, 3340
MabI	ACCWGGT	1 cut(s)	2733
MaeI	CTAG	4 cut(s)	965, 1005, 1190, 3483
MaeII	ACGT	6 cut(s)	627, 2182, 2512, 2674, 2686, 3199
MbiI	CCGCTC	1 cut(s)	2457
MflI	RGATCY	2 cut(s)	1192, 3189
MhlI	GDGCHC	5 cut(s)	620, 752, 838, 873, 1141
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	6 cut(s)	125, 311, 430, 704, 2907, 3472
MmeI	TCCRAC	3 cut(s)	223, 285, 1127
Mph1103I	ATGCAT	2 cut(s)	1438, 1933
MroXI	GAANNNNTTC	2 cut(s)	1053, 3416
MslI	CAYNNNNRTG	9 cut(s)	417, 452, 630, 1065, 1607, 3066, 3198, 3421, 3537
MspA1I	CMGCKG	6 cut(s)	127, 995, 1388, 1544, 1619, 2342
MspI	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
MspR9I	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
MvaI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
MwoI	GCNNNNNNNGC	7 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308
NarI	GGCGCC	1 cut(s)	368
NciI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
NcoI	CCATGG	3 cut(s)	2202, 2310, 3304
NdeI	CATATG	4 cut(s)	667, 875, 1432, 3174
NlaIV	GGNNCC	9 cut(s)	12, 369, 471, 1002, 1204, 2488, 2489, 2593, 3210
NmeAIII	GCCGAG	1 cut(s)	344
NsiI	ATGCAT	2 cut(s)	1438, 1933
NspI	RCATGY	3 cut(s)	1064, 1569, 2881
NspV	TTCGAA	2 cut(s)	99, 2797
OliI	CACNNNNGTG	2 cut(s)	452, 3066
PaeI	GCATGC	1 cut(s)	1569
PciI	ACATGT	1 cut(s)	1060
PciSI	GCTCTTC	2 cut(s)	18, 3063
PcsI	WCGNNNNNNNCGW	5 cut(s)	42, 183, 329, 1870, 2680
PdmI	GAANNNNTTC	2 cut(s)	1053, 3416
PfeI	GAWTC	6 cut(s)	206, 811, 949, 2396, 2410, 3220
PflFI	GACNNNGTC	1 cut(s)	301
PflMI	CCANNNNNTGG	2 cut(s)	1064, 2810
PfoI	TCCNGGA	2 cut(s)	740, 2587
PleI	GAGTC	6 cut(s)	125, 310, 430, 703, 2906, 3471
PluTI	GGCGCC	1 cut(s)	371
PmaCI	CACGTG	1 cut(s)	3200
PmlI	CACGTG	1 cut(s)	3200
PpsI	GAGTC	6 cut(s)	125, 310, 430, 703, 2906, 3471
Ppu21I	YACGTR	2 cut(s)	2183, 3200
PpuMI	RGGWCCY	3 cut(s)	469, 2487, 3209
PscI	ACATGT	1 cut(s)	1060
PshAI	GACNNNNGTC	1 cut(s)	2492
PshBI	ATTAAT	3 cut(s)	576, 2046, 2349
PsiI	TTATAA	3 cut(s)	401, 1910, 2385
Psp124BI	GAGCTC	1 cut(s)	752
Psp5II	RGGWCCY	3 cut(s)	469, 2487, 3209
Psp6I	CCWGG	4 cut(s)	924, 2587, 2594, 2733
PspCI	CACGTG	1 cut(s)	3200
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	5 cut(s)	535, 713, 995, 1388, 1725
PspGI	CCWGG	4 cut(s)	924, 2587, 2594, 2733
PspN4I	GGNNCC	9 cut(s)	12, 369, 471, 1002, 1204, 2488, 2489, 2593, 3210
PspPI	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
PspPPI	RGGWCCY	3 cut(s)	469, 2487, 3209
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	1192, 3189
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	5 cut(s)	127, 995, 1388, 1619, 2342
RseI	CAYNNNNRTG	9 cut(s)	417, 452, 630, 1065, 1607, 3066, 3198, 3421, 3537
SacI	GAGCTC	1 cut(s)	752
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	2 cut(s)	18, 3063
Sau96I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
SchI	GAGTC	6 cut(s)	125, 311, 430, 704, 2907, 3472
ScrFI	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
SduI	GDGCHC	5 cut(s)	620, 752, 838, 873, 1141
SexAI	ACCWGGT	1 cut(s)	2733
SfaNI	GCATC	5 cut(s)	61, 1445, 2326, 3001, 3340
SfcI	CTRYAG	4 cut(s)	2421, 2461, 2889, 3355
SfoI	GGCGCC	1 cut(s)	369
SfuI	TTCGAA	2 cut(s)	99, 2797
SinI	GGWCC	4 cut(s)	469, 2487, 2731, 3209
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	9 cut(s)	417, 452, 630, 1065, 1607, 3066, 3198, 3421, 3537
SmlI	CTYRAG	1 cut(s)	3404
SmoI	CTYRAG	1 cut(s)	3404
SphI	GCATGC	1 cut(s)	1569
SspDI	GGCGCC	1 cut(s)	367
SspI	AATATT	2 cut(s)	1349, 3046
SspMI	CTAG	4 cut(s)	965, 1005, 1190, 3483
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	9 cut(s)	219, 220, 740, 831, 924, 1502, 2587, 2594, 2733
StyI	CCWWGG	6 cut(s)	556, 1248, 2202, 2310, 3142, 3304
TaiI	ACGT	6 cut(s)	630, 2185, 2515, 2677, 2689, 3202
TaqI	TCGA	9 cut(s)	99, 138, 174, 192, 488, 802, 2036, 2797, 3420
TaqII	GACCGA	1 cut(s)	257
TatI	WGTACW	5 cut(s)	30, 497, 2056, 2274, 3214
TauI	GCSGC	4 cut(s)	185, 1786, 2293, 2545
TfiI	GAWTC	6 cut(s)	206, 811, 949, 2396, 2410, 3220
TscAI	CASTG	7 cut(s)	1342, 1529, 2014, 2265, 2451, 2719, 3118
TspDTI	ATGAA	8 cut(s)	136, 448, 559, 1873, 1916, 2423, 3353, 3405
TspGWI	ACGGA	5 cut(s)	473, 545, 783, 1817, 3041
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	7 cut(s)	1342, 1529, 2014, 2265, 2451, 2719, 3118
Tth111I	GACNNNGTC	1 cut(s)	301
Van91I	CCANNNNNTGG	2 cut(s)	1064, 2810
VneI	GTGCAC	1 cut(s)	1137
VpaK11BI	GGWCC	4 cut(s)	469, 2487, 2731, 3209
VspI	ATTAAT	3 cut(s)	576, 2046, 2349
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	3 cut(s)	1064, 1569, 2881
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	2 cut(s)	174, 1599
XmnI	GAANNNNTTC	2 cut(s)	1053, 3416
XspI	CTAG	4 cut(s)	965, 1005, 1190, 3483
ZraI	GACGTC	1 cut(s)	2513
Zsp2I	ATGCAT	2 cut(s)	1438, 1933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.