Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Forward (+)

5800641 .. 5802862

Gene Structure 2222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGAATGAGAAGCCGCTGAGGAAAATCGCAGAGGCGTTCGAGGAGCTGGAAGCCGCCGTGAATTCGCAGACCGGCGAAGTGGAGGTGGCGCGGTTCTCGCAGGCCTGTTCACTCGTCTCGCCGTTATTCGGGTGTTTAGGAATCGCTTTCAAGTTCGCCGAGATGGACTACGTCGCAAAGGTGCATGATCTGGCGGAGGCGTCGAAGTCAATCTCGACCCTACACGTGTTGCTGGAGAAGGATGTGGAGGCGGGCTGTGTGAGAAAGGCGGGGAGTCATTCGAGGAATTTGTTGAGAGTGAAGCGTGGGATTGATATGGTGAAGGTGCTGTTTGAGCAGATTATAGTCACCAAGGGAAATTCCTTGAAGGATCCAGCTTCCAAGGCTTATCAACAGGTGTTTGCACCCCACCATGGGTGGCTCATCAGGAAAGCAGTAGCTGCAGGGATGTATGCGCTTCCTACAAAAGAACAACTGTTGAACAAACTCAATGAAGATGAGACCTCAGCAAAAGCTCAGATGCAAAATTATGTTGCTGCTTCAGCTCCTCTAATTTTGTACATTGACAAACTCTTCCAGACAAGGAATTTAGGTGTAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

203

Amino Acids

22.32

Weight (kDa)

8.36

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	28 - 166	1.6e-41	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	6 cut(s)	17, 57, 94, 197, 254, 272
AclWI	GGATC	2 cut(s)	368, 381
AcsI	RAATTY	4 cut(s)	64, 289, 361, 589
AcuI	CTGAAG	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	3 cut(s)	131, 416, 417
AflIII	ACRYGT	2 cut(s)	226, 228
AgsI	TTSAA	3 cut(s)	154, 370, 484
AluBI	AGCT	5 cut(s)	49, 380, 443, 518, 548
AluI	AGCT	5 cut(s)	49, 380, 443, 518, 548
Alw26I	GTCTC	2 cut(s)	124, 497
AlwI	GGATC	2 cut(s)	368, 381
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	443, 539
ApoI	RAATTY	4 cut(s)	64, 289, 361, 589
AspLEI	GCGC	2 cut(s)	94, 460
AsuHPI	GGTGA	2 cut(s)	334, 343
BamHI	GGATCC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	229
BbvCI	CCTCAGC	2 cut(s)	20, 508
BbvI	GCAGC	2 cut(s)	430, 526
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	2 cut(s)	44, 109
BcoDI	GTCTC	2 cut(s)	124, 497
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	4 cut(s)	17, 57, 444, 540
BlsI	GCNGC	4 cut(s)	18, 58, 445, 541
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	2 cut(s)	20, 508
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	354, 384, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 416, 417
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	354, 384, 415
BseGI	GGATG	2 cut(s)	250, 456
BseLI	CCNNNNNNNGG	3 cut(s)	131, 416, 417
BseMII	CTCAG	3 cut(s)	11, 522, 533
BseRI	GAGGAG	2 cut(s)	59, 540
BseXI	GCAGC	2 cut(s)	430, 526
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	131, 416, 417
BsmAI	GTCTC	2 cut(s)	124, 497
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	190, 373
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	6 cut(s)	17, 57, 94, 197, 254, 272
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	3 cut(s)	12, 521, 532
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	368, 381
BspTNI	GGTCTC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	354, 384, 415
BssMI	GATC	2 cut(s)	190, 373
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	3 cut(s)	354, 384, 415
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	105, 256
BstDEI	CTNAG	3 cut(s)	20, 508, 519
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	250, 456
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	94, 460
BstKTI	GATC	2 cut(s)	193, 376
BstMAI	GTCTC	2 cut(s)	124, 497
BstMBI	GATC	2 cut(s)	190, 373
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 337, 386, 443, 545
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	430, 526
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	250, 456
Cac8I	GCNNGC	2 cut(s)	105, 256
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	2 cut(s)	94, 460
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	2 cut(s)	188, 416
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	3 cut(s)	20, 508, 519
DpnI	GATC	2 cut(s)	192, 375
DpnII	GATC	2 cut(s)	190, 373
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	3 cut(s)	354, 384, 415
Eco147I	AGGCCT	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	528
Eco72I	CACGTG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	64
EcoT14I	CCWWGG	3 cut(s)	354, 384, 415
ErhI	CCWWGG	3 cut(s)	354, 384, 415
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	191, 419
FaiI	YATR	6 cut(s)	189, 320, 347, 417, 456, 534
FatI	CATG	2 cut(s)	187, 415
FauI	CCCGC	2 cut(s)	247, 265
Fnu4HI	GCNGC	4 cut(s)	17, 57, 444, 540
FokI	GGATG	2 cut(s)	257, 463
Fsp4HI	GCNGC	4 cut(s)	17, 57, 444, 540
GlaI	GCGC	2 cut(s)	93, 459
GluI	GCNGC	4 cut(s)	17, 57, 444, 540
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	94, 460
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	191, 419
Hin6I	GCGC	2 cut(s)	92, 458
HinP1I	GCGC	2 cut(s)	92, 458
HinfI	GANTC	2 cut(s)	144, 277
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	334, 343
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	522
Hpy188III	TCNNGA	3 cut(s)	217, 430, 580
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	2 cut(s)	179, 208
HpyAV	CCTTC	3 cut(s)	235, 319, 364
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	174, 228
HpyCH4V	TGCA	4 cut(s)	187, 407, 446, 526
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 337, 386, 443, 545
HpyF3I	CTNAG	3 cut(s)	20, 508, 519
HpySE526I	ACGT	2 cut(s)	174, 228
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	191, 419
HspAI	GCGC	2 cut(s)	92, 458
Kzo9I	GATC	2 cut(s)	190, 373
LmnI	GCTCC	2 cut(s)	46, 553
Lsp1109I	GCAGC	2 cut(s)	430, 526
LweI	GCATC	1 cut(s)	513
MaeII	ACGT	2 cut(s)	174, 228
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	192, 375
MboI	GATC	2 cut(s)	190, 373
MboII	GAAGA	2 cut(s)	509, 568
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	6 cut(s)	64, 289, 361, 529, 555, 589
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	9 cut(s)	15, 28, 37, 79, 193, 244, 279, 517, 561
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	5 cut(s)	100, 337, 386, 443, 545
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	190, 373
NlaIII	CATG	2 cut(s)	191, 419
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	18, 58, 445, 541
PleI	GAGTC	1 cut(s)	285
PmaCI	CACGTG	1 cut(s)	229
PmlI	CACGTG	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SatI	GCNGC	4 cut(s)	17, 57, 444, 540
Sau3AI	GATC	2 cut(s)	190, 373
SchI	GAGTC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	444
Sse9I	AATT	6 cut(s)	64, 289, 361, 529, 555, 589
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	6 cut(s)	17, 57, 94, 197, 254, 272
StuI	AGGCCT	1 cut(s)	107
StyI	CCWWGG	3 cut(s)	354, 384, 415
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	2 cut(s)	177, 231
TaqI	TCGA	4 cut(s)	42, 206, 218, 284
TasI	AATT	6 cut(s)	64, 289, 361, 529, 555, 589
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	2 cut(s)	19, 59
TfiI	GAWTC	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	2 cut(s)	443, 539
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	510
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	4 cut(s)	64, 289, 361, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.