Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Reverse (-)

15806604 .. 15807139

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCGAACGAGAAGCCTTTGAGGAAAATTGCAGAGGCATTCGAGGAGCTAGAAGCGGCCGTGAAATTGGAGACCAGCGAAGTGGAGGTGGCACGGTTCTCGCAGGCATGTTCTCTCGTCTCGCTGCTGTTCGGGTGCTTAGGTATTGCTTTCAAGTTCGCCGAGATGGACTACGTAGCAAAGGTTGGTGGACCGGGATATGGAGGCGGGCACTGTGAGAAATGCGGGTACTCATGCGAGGAAGTTGCTAAGAGTGAAGCATGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

89

Amino Acids

9.6

Weight (kDa)

4.75

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 207, 225
AcoI	YGGCCR	1 cut(s)	57
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	65, 124
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 227, 261
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	65, 124
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	57, 125
BlsI	GCNGC	2 cut(s)	58, 126
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	213
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	65, 124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	213
BspACI	CCGC	3 cut(s)	56, 207, 225
BspANI	GGCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	96, 215
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	105, 209
BstDEI	CTNAG	2 cut(s)	139, 249
BstMAI	GTCTC	2 cut(s)	65, 124
BstMCI	CGRYCG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	111
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	105, 209
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	108, 234, 261
CviJI	RGCY	3 cut(s)	16, 49, 59
CviKI_1	RGCY	3 cut(s)	16, 49, 59
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	139, 249
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco105I	TACGTA	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	191
Eco52I	CGGCCG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	111, 237, 264
FaiI	YATR	4 cut(s)	109, 201, 235, 262
FatI	CATG	3 cut(s)	107, 233, 260
FauI	CCCGC	2 cut(s)	200, 218
Fnu4HI	GCNGC	2 cut(s)	57, 125
Fsp4HI	GCNGC	2 cut(s)	57, 125
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	57, 125
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	3 cut(s)	111, 237, 264
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	96, 215
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	139, 249
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	111, 237, 264
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	88, 89, 207
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	27, 65
MnlI	CCTC	6 cut(s)	15, 28, 37, 79, 197, 232
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	195
NlaIII	CATG	3 cut(s)	111, 237, 264
NmeAIII	GCCGAG	1 cut(s)	187
NspI	RCATGY	1 cut(s)	111
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	58, 126
Ppu21I	YACGTR	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	2 cut(s)	57, 125
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	51, 90, 145, 177, 186
SinI	GGWCC	1 cut(s)	191
SnaBI	TACGTA	1 cut(s)	175
Sse9I	AATT	2 cut(s)	27, 65
SsiI	CCGC	3 cut(s)	56, 207, 225
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	96, 215
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	27, 65
TauI	GCSGC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	1 cut(s)	124
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.