Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Forward (+)

4437003 .. 4439551

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G089300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGAATGAGAAGCCTCTGAGGAAAATATCGGAGGCATTCAAAGAGCTCGAGGCAGTCGTAAACTCCCAAACAGCGGAAATCGAGGTCGCGCCGTTCTCCAGCGCGTGCTCTCTGGTGTCGCCTCTGTTCGGATGCTTGGGCATCGCCTTCAAGTTCGCCGAGATAGACTACGTCGCCAAGGTCCATGATCTGGCGGAGGCGTCGAAGTCAATCTCGACCTTAACGGTTTTGCTCGACCGCGATATCGAAGGGGATTGCGTGAGGAAAGCCGGTAGTCATTCGAGGAATTTGCTGAGAGTGAAGCGTGGGCTCGACATGGTTAGGGTACTCTTCGAGCAAATTATAGTCACCAAGGGAAATTCCTTGAAGGATCCTGCTTCCAAGGCTTATGCACAGGTGTTTGCTCCCCACCATGGGTGGGTCATCCGGAAAGCTGTTGCTGCAGGGATGTATGCACTTCCTACTAAAGAACAACTATTACATAAACTCAATGAAGATGAGAACTCAGCAAGTGTTCAAATGCAGAATTACATTGCTGCTTCGACGCCTCTAATTCTGTACATCGACAAACTCTTCCATTCAAGGAAATTGGATGTAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

203

Amino Acids

22.4

Weight (kDa)

7.73

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccII	CGCG	3 cut(s)	92, 107, 243
AccIII	TCCGGA	1 cut(s)	429
AciI	CCGC	3 cut(s)	77, 197, 241
AclWI	GGATC	2 cut(s)	368, 381
AcsI	RAATTY	2 cut(s)	289, 361
AcyI	GRCGYC	2 cut(s)	203, 548
AfaI	GTAC	2 cut(s)	330, 563
AfiI	CCNNNNNNNGG	6 cut(s)	76, 131, 193, 416, 417, 421
AgsI	TTSAA	5 cut(s)	43, 154, 370, 521, 585
AluBI	AGCT	2 cut(s)	49, 437
AluI	AGCT	2 cut(s)	49, 437
Alw21I	GWGCWC	2 cut(s)	51, 113
AlwI	GGATC	2 cut(s)	368, 381
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	443, 539
ApoI	RAATTY	2 cut(s)	289, 361
AspLEI	GCGC	2 cut(s)	94, 107
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	2 cut(s)	51, 315
Bbv12I	GWGCWC	2 cut(s)	51, 113
BbvI	GCAGC	2 cut(s)	430, 526
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	444, 540
BlsI	GCNGC	2 cut(s)	445, 541
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	2 cut(s)	125, 153
BpmI	CTGGAG	1 cut(s)	85
BsaHI	GRCGYC	2 cut(s)	203, 548
BsaJI	CCNNGG	4 cut(s)	180, 354, 384, 415
BsaWI	WCCGGW	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 131, 193, 416, 417, 421
Bse118I	RCCGGY	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	180, 354, 384, 415
BseGI	GGATG	4 cut(s)	140, 426, 456, 601
BseLI	CCNNNNNNNGG	6 cut(s)	76, 131, 193, 416, 417, 421
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	11, 287, 522
BseXI	GCAGC	2 cut(s)	430, 526
Bsh1236I	CGCG	3 cut(s)	92, 107, 243
Bsh1285I	CGRYCG	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	51, 113
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	273, 430
BslI	CCNNNNNNNGG	6 cut(s)	76, 131, 193, 416, 417, 421
BsmI	GAATGC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	51, 113, 315
Bsp13I	TCCGGA	1 cut(s)	429
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	190, 373
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	3 cut(s)	77, 197, 241
BspCNI	CTCAG	3 cut(s)	12, 288, 521
BspEI	TCCGGA	1 cut(s)	429
BspFNI	CGCG	3 cut(s)	92, 107, 243
BspLI	GGNNCC	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	368, 381
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	180, 354, 384, 415
BssMI	GATC	2 cut(s)	190, 373
BssNI	GRCGYC	2 cut(s)	203, 548
BssT1I	CCWWGG	4 cut(s)	180, 354, 384, 415
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	338, 581
BstACI	GRCGYC	2 cut(s)	203, 548
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	20, 296, 508
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	4 cut(s)	140, 426, 456, 601
BstFNI	CGCG	3 cut(s)	92, 107, 243
BstHHI	GCGC	2 cut(s)	94, 107
BstKTI	GATC	2 cut(s)	193, 376
BstMBI	GATC	2 cut(s)	190, 373
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 443
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	3 cut(s)	92, 107, 243
BstV1I	GCAGC	2 cut(s)	430, 526
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	415
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	4 cut(s)	140, 426, 456, 601
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	2 cut(s)	94, 107
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	2 cut(s)	192, 556
Csp6I	GTAC	2 cut(s)	329, 562
CviAII	CATG	3 cut(s)	188, 319, 416
CviJI	RGCY	6 cut(s)	16, 49, 272, 313, 389, 437
CviKI_1	RGCY	6 cut(s)	16, 49, 272, 313, 389, 437
CviQI	GTAC	2 cut(s)	329, 562
DdeI	CTNAG	3 cut(s)	20, 296, 508
DpnI	GATC	2 cut(s)	192, 375
DpnII	GATC	2 cut(s)	190, 373
Eam1104I	CTCTTC	2 cut(s)	338, 581
EarI	CTCTTC	2 cut(s)	338, 581
EciI	GGCGGA	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	4 cut(s)	180, 354, 384, 415
Eco24I	GRGCYC	2 cut(s)	51, 315
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	4 cut(s)	180, 354, 384, 415
EcoT38I	GRGCYC	2 cut(s)	51, 315
ErhI	CCWWGG	4 cut(s)	180, 354, 384, 415
FaeI	CATG	3 cut(s)	191, 322, 419
FaiI	YATR	7 cut(s)	189, 320, 347, 393, 417, 456, 486
FatI	CATG	3 cut(s)	187, 318, 415
Fnu4HI	GCNGC	2 cut(s)	444, 540
FokI	GGATG	3 cut(s)	147, 413, 463
FriOI	GRGCYC	2 cut(s)	51, 315
Fsp4HI	GCNGC	2 cut(s)	444, 540
GlaI	GCGC	2 cut(s)	93, 106
GluI	GCNGC	2 cut(s)	444, 540
GsuI	CTGGAG	1 cut(s)	85
HapII	CCGG	2 cut(s)	273, 430
HgaI	GACGC	2 cut(s)	192, 556
HhaI	GCGC	2 cut(s)	94, 107
Hin1I	GRCGYC	2 cut(s)	203, 548
Hin1II	CATG	3 cut(s)	191, 322, 419
Hin6I	GCGC	2 cut(s)	92, 105
HinP1I	GCGC	2 cut(s)	92, 105
HpaII	CCGG	2 cut(s)	273, 430
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	21, 34, 134
Hpy188III	TCNNGA	2 cut(s)	217, 430
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	179, 208, 550
HpyAV	CCTTC	3 cut(s)	160, 245, 364
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	395, 446, 458, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 443
HpyF3I	CTNAG	3 cut(s)	20, 296, 508
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	203, 548
Hsp92II	CATG	3 cut(s)	191, 322, 419
HspAI	GCGC	2 cut(s)	92, 105
Kpn2I	TCCGGA	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	190, 373
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	101, 115, 179, 286, 383, 390, 432, 443
Lsp1109I	GCAGC	2 cut(s)	430, 526
LweI	GCATC	2 cut(s)	125, 153
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	192, 375
MboI	GATC	2 cut(s)	190, 373
MboII	GAAGA	3 cut(s)	325, 509, 568
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	51, 113, 315
MluCI	AATT	6 cut(s)	289, 342, 361, 529, 555, 590
MroI	TCCGGA	1 cut(s)	429
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	273, 430
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	3 cut(s)	92, 107, 243
MwoI	GCNNNNNNNGC	2 cut(s)	386, 443
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	190, 373
NlaIII	CATG	3 cut(s)	191, 322, 419
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	445, 541
Psp124BI	GAGCTC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	465, 497
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	2 cut(s)	330, 563
RsaNI	GTAC	2 cut(s)	329, 562
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	2 cut(s)	444, 540
Sau3AI	GATC	2 cut(s)	190, 373
Sau96I	GGNCC	1 cut(s)	184
SduI	GDGCHC	3 cut(s)	51, 113, 315
SetI	ASST	7 cut(s)	51, 90, 177, 186, 224, 402, 439
SfaNI	GCATC	2 cut(s)	125, 153
SfcI	CTRYAG	1 cut(s)	444
Sfr274I	CTCGAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	6 cut(s)	289, 342, 361, 529, 555, 590
SsiI	CCGC	3 cut(s)	77, 197, 241
SstI	GAGCTC	1 cut(s)	51
StyI	CCWWGG	4 cut(s)	180, 354, 384, 415
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	177
TasI	AATT	6 cut(s)	289, 342, 361, 529, 555, 590
TatI	WGTACW	1 cut(s)	561
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	2 cut(s)	443, 539
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	510
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	289, 361
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.