Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000843.1

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Forward (+)

36872 .. 39878

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000843.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggcgaacgagaagccactgaggaaaattgcagaagcattcaaggagctgagagtacaaaaacttgaccaaagctcaatgtcagttaccaagtcgtcatcaaaagcagacaagttgggcttgctctctcgtctcgccggagagaaaatttctagagagagagagtctgcaatggcgaacgagaagccactgaggaaaattgcagaagcattcaaggagctggaggccgccgtgaaatcggagaccggcgaagtggaggtggcgcggttctcgcaggcttgctctctcgtctcgccgctgttcgggtgcttagggatcgctttcaagttcgccgagatggactacgtcgcaaaggtgcatgatctggcggaggcgtcgaaatcaatctcgaccctacacgtgttggtggaccgggatatggaggcgggcactgtgagaaaggcgggtggtcatgccaggaatttgctgagggtgaagcgtgggattgatatggtgaaggtgctgtttgagcagattatagtcaccaagggaaattccttgaaggatccagcttccaaggcatatcaacaggtgtttgcaccccatcatgggtgggtcatcaggaaagctgttgctgccgggatgtatgcgcttcctacaaaagaacaactgttgcacaaactcaatgaagatgagacctcggcaaaagctcaaatgcaaaattatgttgccgcttcagcacctctaattctgtacatcgacaaactcttccagacaaggaatttgggtgtagattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

259

Amino Acids

28.66

Weight (kDa)

9.43

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AciI	CCGC	7 cut(s)	228, 265, 296, 368, 425, 443, 711
AclWI	GGATC	3 cut(s)	323, 539, 552
AcsI	RAATTY	4 cut(s)	147, 460, 532, 760
AcuI	CTGAAG	1 cut(s)	699
AcvI	CACGTG	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	2 cut(s)	57, 734
AfiI	CCNNNNNNNGG	4 cut(s)	302, 418, 587, 588
AflIII	ACRYGT	2 cut(s)	397, 399
AgsI	TTSAA	4 cut(s)	43, 214, 325, 541
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	6 cut(s)	49, 75, 220, 551, 608, 689
AluI	AGCT	6 cut(s)	49, 75, 220, 551, 608, 689
Alw26I	GTCTC	4 cut(s)	137, 236, 295, 668
AlwI	GGATC	3 cut(s)	323, 539, 552
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	4 cut(s)	147, 460, 532, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	745, 777
AspLEI	GCGC	2 cut(s)	265, 631
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	2 cut(s)	413, 619
AsuHPI	GGTGA	3 cut(s)	484, 505, 514
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	544
BbrPI	CACGTG	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	2 cut(s)	331, 591
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	457
BcnI	CCSGG	2 cut(s)	413, 619
BcoDI	GTCTC	4 cut(s)	137, 236, 295, 668
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	4 cut(s)	228, 296, 615, 711
BlsI	GCNGC	4 cut(s)	229, 297, 616, 712
Bme1390I	CCNGG	3 cut(s)	413, 457, 619
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	3 cut(s)	413, 457, 619
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	310, 467
BpuMI	CCSGG	2 cut(s)	413, 619
BsaAI	YACGTR	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	2 cut(s)	236, 668
BsaJI	CCNNGG	3 cut(s)	525, 555, 678
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 418, 587, 588
Bse118I	RCCGGY	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	525, 555, 678
BseGI	GGATG	1 cut(s)	627
BseLI	CCNNNNNNNGG	4 cut(s)	302, 418, 587, 588
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	4 cut(s)	11, 41, 182, 458
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	601
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	4 cut(s)	138, 246, 412, 618
BslI	CCNNNNNNNGG	4 cut(s)	302, 418, 587, 588
BsmAI	GTCTC	4 cut(s)	137, 236, 295, 668
BsmBI	CGTCTC	2 cut(s)	137, 295
BsmI	GAATGC	2 cut(s)	38, 209
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	2 cut(s)	236, 668
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	3 cut(s)	315, 361, 544
BspACI	CCGC	7 cut(s)	228, 265, 296, 368, 425, 443, 711
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	4 cut(s)	12, 42, 183, 459
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	3 cut(s)	323, 539, 552
BspTNI	GGTCTC	2 cut(s)	236, 668
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	732
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	525, 555, 678
BssMI	GATC	3 cut(s)	315, 361, 544
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	525, 555
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	433, 651
Bst6I	CTCTTC	1 cut(s)	752
BstACI	GRCGYC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	4 cut(s)	122, 276, 280, 427
BstDEI	CTNAG	5 cut(s)	20, 50, 191, 310, 467
BstF5I	GGATG	1 cut(s)	627
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	265, 631
BstKTI	GATC	3 cut(s)	318, 364, 547
BstMAI	GTCTC	4 cut(s)	137, 236, 295, 668
BstMBI	GATC	3 cut(s)	315, 361, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 508, 557, 614, 716
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	411, 455, 617
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	601
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	627
BtsIMutI	CAGTG	3 cut(s)	17, 188, 429
Cac8I	GCNNGC	4 cut(s)	122, 276, 280, 427
CfoI	GCGC	2 cut(s)	265, 631
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	56, 733
CviAII	CATG	3 cut(s)	359, 452, 587
CviQI	GTAC	2 cut(s)	56, 733
DdeI	CTNAG	5 cut(s)	20, 50, 191, 310, 467
DpnI	GATC	3 cut(s)	317, 363, 546
DpnII	GATC	3 cut(s)	315, 361, 544
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	525, 555
Eco31I	GGTCTC	2 cut(s)	236, 668
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	699
Eco72I	CACGTG	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	2 cut(s)	525, 555
ErhI	CCWWGG	2 cut(s)	525, 555
Esp3I	CGTCTC	2 cut(s)	137, 295
FaeI	CATG	3 cut(s)	362, 455, 590
FaiI	YATR	9 cut(s)	360, 419, 453, 491, 518, 562, 588, 627, 705
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	3 cut(s)	358, 451, 586
FauI	CCCGC	2 cut(s)	418, 436
Fnu4HI	GCNGC	4 cut(s)	228, 296, 615, 711
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	4 cut(s)	228, 296, 615, 711
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	2 cut(s)	264, 630
GluI	GCNGC	4 cut(s)	228, 296, 615, 711
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	4 cut(s)	138, 246, 412, 618
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	2 cut(s)	265, 631
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	362, 455, 590
Hin6I	GCGC	2 cut(s)	263, 629
HinP1I	GCGC	2 cut(s)	263, 629
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	4 cut(s)	138, 246, 412, 618
HphI	GGTGA	3 cut(s)	484, 505, 514
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	4 cut(s)	153, 388, 601, 751
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	2 cut(s)	350, 379
HpyAV	CCTTC	2 cut(s)	490, 535
HpyCH4III	ACNGT	2 cut(s)	433, 651
HpyCH4IV	ACGT	2 cut(s)	345, 399
HpyCH4V	TGCA	7 cut(s)	32, 170, 203, 358, 578, 655, 697
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 508, 557, 614, 716
HpyF3I	CTNAG	5 cut(s)	20, 50, 191, 310, 467
HpySE526I	ACGT	2 cut(s)	345, 399
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	362, 455, 590
HspAI	GCGC	2 cut(s)	263, 629
Kzo9I	GATC	3 cut(s)	315, 361, 544
LmnI	GCTCC	2 cut(s)	46, 217
Lsp1109I	GCAGC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	345, 399
MaeIII	GTNAC	2 cut(s)	85, 520
MalI	GATC	3 cut(s)	317, 363, 546
MboI	GATC	3 cut(s)	315, 361, 544
MboII	GAAGA	2 cut(s)	680, 739
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	8 cut(s)	27, 147, 198, 460, 532, 700, 726, 760
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	9 cut(s)	15, 186, 217, 250, 364, 415, 462, 688, 732
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	4 cut(s)	138, 246, 412, 618
MspR9I	CCNGG	3 cut(s)	413, 457, 619
Mva1269I	GAATGC	2 cut(s)	38, 209
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	5 cut(s)	271, 508, 557, 614, 716
NciI	CCSGG	2 cut(s)	413, 619
NdeII	GATC	3 cut(s)	315, 361, 544
NlaIII	CATG	3 cut(s)	362, 455, 590
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	2 cut(s)	358, 659
NmuCI	GTSAC	1 cut(s)	520
PctI	GAATGC	2 cut(s)	38, 209
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	229, 297, 616, 712
PleI	GAGTC	1 cut(s)	172
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	455
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	2 cut(s)	57, 734
RsaNI	GTAC	2 cut(s)	56, 733
SatI	GCNGC	4 cut(s)	228, 296, 615, 711
Sau3AI	GATC	3 cut(s)	315, 361, 544
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	413, 457, 619
SduI	GDGCHC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	8 cut(s)	27, 147, 198, 460, 532, 700, 726, 760
SsiI	CCGC	7 cut(s)	228, 265, 296, 368, 425, 443, 711
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	411, 455, 617
StyI	CCWWGG	2 cut(s)	525, 555
TaaI	ACNGT	2 cut(s)	433, 651
TaiI	ACGT	2 cut(s)	348, 402
TaqI	TCGA	3 cut(s)	377, 389, 738
TasI	AATT	8 cut(s)	27, 147, 198, 460, 532, 700, 726, 760
TatI	WGTACW	2 cut(s)	55, 732
TauI	GCSGC	3 cut(s)	230, 298, 713
TscAI	CASTG	3 cut(s)	24, 195, 436
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	681
TspRI	CASTG	3 cut(s)	24, 195, 436
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	4 cut(s)	147, 460, 532, 760
XbaI	TCTAGA	1 cut(s)	152
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.