Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Reverse (-)

23713523 .. 23714851

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGGACGAGAGGCCGCTGAGGAAGATAGCGGAGGCATTCAAAGAGCTCGAGGCAGCCGTAAACTCCCCAGCGGCGGACGTCGAGGTGGCTCCGTTCTCTCATGCGTGCTCGCTCGTTTCGCCTCTGTTCGGCTGCTTGGGAATCGCCTTCAAATTCGCCGAGATCGACTACGTTGCCAAGGTCCATGATCTATCGGAGGCGTCGGATTCAATCTCGACGTTGCAGGTTCTGCTCGATCGCGATATCGAAGCGGATTGCGTGAGAAAGGCCGGTAGTCACTCGAGGAATTTGTTGAGAGTGAAGCGTGGGATTGACATGGTTAGAGTGCTCTTCGAGCAAATTATAGTCACCAAGGGAAATTCCCTGAAGGATCCAGCTTCCAAGGCTTACGCACAGGTGTTTGCTCCCCACCATGGATGTGTCATCAGGAAAGCTGTTGCTGCAGGGATGTATGCGCTTCCTACTAGGGAACAACTAATGAACAAACTCAATGAAGACGGTGAGTGTATTACGAGATATTACATTTGTTTCTTAAATTCTATATCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

185

Amino Acids

20.27

Weight (kDa)

6.51

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	1 cut(s)	243
AciI	CCGC	6 cut(s)	5, 17, 32, 74, 77, 254
AclWI	GGATC	2 cut(s)	368, 381
AcsI	RAATTY	4 cut(s)	155, 289, 361, 538
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	2 cut(s)	81, 203
AfiI	CCNNNNNNNGG	3 cut(s)	76, 131, 416
AgsI	TTSAA	3 cut(s)	43, 154, 213
AluBI	AGCT	3 cut(s)	49, 380, 437
AluI	AGCT	3 cut(s)	49, 380, 437
Alw21I	GWGCWC	3 cut(s)	51, 113, 333
AlwI	GGATC	2 cut(s)	368, 381
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	2 cut(s)	50, 283
AoxI	GGCC	2 cut(s)	14, 270
ApeKI	GCWGC	3 cut(s)	56, 135, 443
ApoI	RAATTY	4 cut(s)	155, 289, 361, 538
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	343, 515
AvaI	CYCGRG	2 cut(s)	50, 283
AvaII	GGWCC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	3 cut(s)	51, 113, 333
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	68, 122, 430
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	5 cut(s)	17, 57, 75, 136, 444
BlsI	GCNGC	5 cut(s)	18, 58, 76, 137, 445
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	50, 283
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	93, 375
BpiI	GAAGAC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	81, 203
BsaJI	CCNNGG	4 cut(s)	180, 354, 384, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 131, 416
Bse118I	RCCGGY	1 cut(s)	272
BseDI	CCNNGG	4 cut(s)	180, 354, 384, 415
BseGI	GGATG	2 cut(s)	425, 456
BseLI	CCNNNNNNNGG	3 cut(s)	76, 131, 416
BseMII	CTCAG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	68, 122, 430
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	16, 272
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	3 cut(s)	51, 113, 333
BsiHKCI	CYCGRG	2 cut(s)	50, 283
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	76, 131, 416
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	16, 272
BsoBI	CYCGRG	2 cut(s)	50, 283
Bsp1286I	GDGCHC	3 cut(s)	51, 113, 333
Bsp143I	GATC	4 cut(s)	165, 190, 238, 373
Bsp19I	CCATGG	1 cut(s)	415
Bsp68I	TCGCGA	1 cut(s)	243
BspACI	CCGC	6 cut(s)	5, 17, 32, 74, 77, 254
BspANI	GGCC	2 cut(s)	16, 272
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	93, 375
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	368, 381
BspQI	GCTCTTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	180, 354, 384, 415
BssMI	GATC	4 cut(s)	165, 190, 238, 373
BssNI	GRCGYC	2 cut(s)	81, 203
BssT1I	CCWWGG	4 cut(s)	180, 354, 384, 415
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	2 cut(s)	81, 203
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	109, 113
BstDEI	CTNAG	2 cut(s)	20, 549
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	425, 456
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	4 cut(s)	168, 193, 241, 376
BstMBI	GATC	4 cut(s)	165, 190, 238, 373
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 232, 337, 386, 443
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	68, 122, 430
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	16, 272
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	425, 456
BtuMI	TCGCGA	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	109, 113
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	192
CviAII	CATG	4 cut(s)	104, 188, 319, 416
CviJI	RGCY	9 cut(s)	16, 49, 59, 92, 135, 272, 380, 389, 437
CviKI_1	RGCY	9 cut(s)	16, 49, 59, 92, 135, 272, 380, 389, 437
DdeI	CTNAG	2 cut(s)	20, 549
DpnI	GATC	4 cut(s)	167, 192, 240, 375
DpnII	GATC	4 cut(s)	165, 190, 238, 373
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	2 cut(s)	20, 92
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	4 cut(s)	180, 354, 384, 415
Eco24I	GRGCYC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	389
Eco88I	CYCGRG	2 cut(s)	50, 283
EcoICRI	GAGCTC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	4 cut(s)	180, 354, 384, 415
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	4 cut(s)	180, 354, 384, 415
FaeI	CATG	4 cut(s)	107, 191, 322, 419
FaiI	YATR	7 cut(s)	105, 189, 320, 347, 417, 456, 545
FatI	CATG	4 cut(s)	103, 187, 318, 415
Fnu4HI	GCNGC	5 cut(s)	17, 57, 75, 136, 444
FokI	GGATG	2 cut(s)	432, 463
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	5 cut(s)	17, 57, 75, 136, 444
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	5 cut(s)	17, 57, 75, 136, 444
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	16, 272
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	2 cut(s)	81, 203
Hin1II	CATG	4 cut(s)	107, 191, 322, 419
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	144, 209
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	343, 515
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	199, 208
Hpy188III	TCNNGA	3 cut(s)	217, 242, 430
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	86, 208, 223
HpyAV	CCTTC	2 cut(s)	160, 364
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	3 cut(s)	81, 174, 221
HpyCH4V	TGCA	2 cut(s)	226, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 232, 337, 386, 443
HpyF3I	CTNAG	2 cut(s)	20, 549
HpySE526I	ACGT	3 cut(s)	81, 174, 221
Hsp92I	GRCGYC	2 cut(s)	81, 203
Hsp92II	CATG	4 cut(s)	107, 191, 322, 419
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	4 cut(s)	165, 190, 238, 373
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	97, 412
LpnPI	CCDG	8 cut(s)	84, 212, 286, 380, 383, 390, 415, 432
Lsp1109I	GCAGC	3 cut(s)	68, 122, 430
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	3 cut(s)	81, 174, 221
MaeIII	GTNAC	2 cut(s)	278, 349
MalI	GATC	4 cut(s)	167, 192, 240, 375
MboI	GATC	4 cut(s)	165, 190, 238, 373
MboII	GAAGA	3 cut(s)	37, 325, 509
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	51, 113, 333
MluCI	AATT	5 cut(s)	155, 289, 342, 361, 538
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	8 cut(s)	6, 15, 28, 46, 79, 135, 193, 279
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	19, 74
MspI	CCGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	5 cut(s)	121, 232, 337, 386, 443
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	4 cut(s)	165, 190, 238, 373
NlaIII	CATG	4 cut(s)	107, 191, 322, 419
NlaIV	GGNNCC	2 cut(s)	93, 375
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	278, 349
NruI	TCGCGA	1 cut(s)	243
PaeR7I	CTCGAG	2 cut(s)	50, 283
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 165
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	144, 209
PkrI	GCNGC	5 cut(s)	18, 58, 76, 137, 445
Ple19I	CGATCG	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	93, 375
PspPI	GGNCC	1 cut(s)	184
PspXI	VCTCGAGB	2 cut(s)	50, 283
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	241
RruI	TCGCGA	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	5 cut(s)	17, 57, 75, 136, 444
Sau3AI	GATC	4 cut(s)	165, 190, 238, 373
Sau96I	GGNCC	1 cut(s)	184
SduI	GDGCHC	3 cut(s)	51, 113, 333
SfcI	CTRYAG	1 cut(s)	444
Sfr274I	CTCGAG	2 cut(s)	50, 283
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	2 cut(s)	50, 283
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	50, 283
SmoI	CTYRAG	2 cut(s)	50, 283
Sse9I	AATT	5 cut(s)	155, 289, 342, 361, 538
SsiI	CCGC	6 cut(s)	5, 17, 32, 74, 77, 254
SspMI	CTAG	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	51
StyI	CCWWGG	4 cut(s)	180, 354, 384, 415
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	3 cut(s)	84, 177, 224
TaqI	TCGA	8 cut(s)	51, 84, 168, 218, 237, 249, 284, 336
TasI	AATT	5 cut(s)	155, 289, 342, 361, 538
TauI	GCSGC	2 cut(s)	19, 77
TfiI	GAWTC	2 cut(s)	144, 209
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TseFI	GTSAC	2 cut(s)	278, 349
TseI	GCWGC	3 cut(s)	56, 135, 443
Tsp45I	GTSAC	2 cut(s)	278, 349
TspDTI	ATGAA	2 cut(s)	497, 510
TspGWI	ACGGA	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	4 cut(s)	155, 289, 361, 538
XhoI	CTCGAG	2 cut(s)	50, 283
XspI	CTAG	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.