Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Reverse (-)

83041404 .. 83043697

Gene Structure 2294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGAATGAGAAGCCACTGAGGAAAATTGCAGAAGCATTCAAGGAGCTGGAGGCCGCCGTGAAATCGGAGACCGGCGAAGTGGACGTGGCGCGGTTCTCGCAGGCTTGCTCTCTCGTCTCGCCGCTGTTCGGGTGCTTAGGGATCGCTTTCAAGTTCGCCGAGATGGACTACGTCGCAAAGGTGCATGATCTGGCGGAGGCGTCGAAATCAATCTCGACCCTACACGTGTTGGTGGACCGGGATATGGAGGCGGGCACTGTGAGAAAGGCGGGTGGTCATGCGAGGAATTTGCTGAGGGTGAAGCGTGGGATTGATATGGTGAAGGGAAATTCCTTGAAGGATCCAGCTTCCAAGGCATATCAACAGGTGTTTGCACCCCATCATGGGTGGGTCATCAGGAAAGCTGTTGCTGCCGGGATGTATGCGCTTCCTACAAAAGAACAACTGTTGCACAAACTCAATGAAGATGAGACCTCGGCAAAAGCACAAATGCAAAATTATGTTGCCGCTTCAGCACCTCTAATTCTGTACATTGACAAACTCTTCCAGACAAGGAATTTGGGTGTGGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

192

Amino Acids

21.14

Weight (kDa)

9.0

Isoelectric Point (pI)

23.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	28 - 156	2.4e-33	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	7 cut(s)	57, 94, 125, 197, 254, 272, 510
AclWI	GGATC	3 cut(s)	152, 338, 351
AcsI	RAATTY	3 cut(s)	289, 331, 559
AcuI	CTGAAG	1 cut(s)	498
AcvI	CACGTG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	131, 247, 386, 387
AflIII	ACRYGT	2 cut(s)	226, 228
AgsI	TTSAA	3 cut(s)	43, 154, 340
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	3 cut(s)	49, 350, 407
AluI	AGCT	3 cut(s)	49, 350, 407
Alw26I	GTCTC	3 cut(s)	65, 124, 467
AlwI	GGATC	3 cut(s)	152, 338, 351
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	3 cut(s)	289, 331, 559
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AspLEI	GCGC	2 cut(s)	94, 430
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	2 cut(s)	242, 418
AsuHPI	GGTGA	2 cut(s)	313, 334
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	343
BbrPI	CACGTG	1 cut(s)	229
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	160, 390
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcnI	CCSGG	2 cut(s)	242, 418
BcoDI	GTCTC	3 cut(s)	65, 124, 467
BisI	GCNGC	4 cut(s)	57, 125, 414, 510
BlsI	GCNGC	4 cut(s)	58, 126, 415, 511
Bme1390I	CCNGG	2 cut(s)	242, 418
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	242, 418
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	139, 296
BpuMI	CCSGG	2 cut(s)	242, 418
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	2 cut(s)	65, 467
BsaJI	CCNNGG	2 cut(s)	354, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 247, 386, 387
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	354, 477
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	4 cut(s)	131, 247, 386, 387
BseMII	CTCAG	2 cut(s)	11, 287
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	75, 241, 417
BslI	CCNNNNNNNGG	4 cut(s)	131, 247, 386, 387
BsmAI	GTCTC	3 cut(s)	65, 124, 467
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	2 cut(s)	65, 467
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	144, 190, 343
BspACI	CCGC	7 cut(s)	57, 94, 125, 197, 254, 272, 510
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	12, 288
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	152, 338, 351
BspTNI	GGTCTC	2 cut(s)	65, 467
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	531
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	354, 477
BssMI	GATC	3 cut(s)	144, 190, 343
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	262, 450
Bst6I	CTCTTC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	531
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	105, 109, 256
BstDEI	CTNAG	3 cut(s)	20, 139, 296
BstF5I	GGATG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	94, 430
BstKTI	GATC	3 cut(s)	147, 193, 346
BstMAI	GTCTC	3 cut(s)	65, 124, 467
BstMBI	GATC	3 cut(s)	144, 190, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 356, 413, 515
BstSCI	CCNGG	2 cut(s)	240, 416
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	17, 258
Cac8I	GCNNGC	3 cut(s)	105, 109, 256
CfoI	GCGC	2 cut(s)	94, 430
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	3 cut(s)	188, 281, 386
CviJI	RGCY	6 cut(s)	16, 49, 56, 107, 350, 407
CviKI_1	RGCY	6 cut(s)	16, 49, 56, 107, 350, 407
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	3 cut(s)	20, 139, 296
DpnI	GATC	3 cut(s)	146, 192, 345
DpnII	GATC	3 cut(s)	144, 190, 343
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	354
Eco31I	GGTCTC	2 cut(s)	65, 467
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	498
Eco72I	CACGTG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	191, 284, 389
FaiI	YATR	8 cut(s)	189, 248, 282, 320, 361, 387, 426, 504
FatI	CATG	3 cut(s)	187, 280, 385
FauI	CCCGC	2 cut(s)	247, 265
Fnu4HI	GCNGC	4 cut(s)	57, 125, 414, 510
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	4 cut(s)	57, 125, 414, 510
GlaI	GCGC	2 cut(s)	93, 429
GluI	GCNGC	4 cut(s)	57, 125, 414, 510
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	75, 241, 417
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	94, 430
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	191, 284, 389
Hin6I	GCGC	2 cut(s)	92, 428
HinP1I	GCGC	2 cut(s)	92, 428
HpaII	CCGG	3 cut(s)	75, 241, 417
HphI	GGTGA	2 cut(s)	313, 334
Hpy166II	GTNNAC	2 cut(s)	85, 238
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	217, 400, 550
Hpy8I	GTNNAC	2 cut(s)	85, 238
Hpy99I	CGWCG	2 cut(s)	179, 208
HpyAV	CCTTC	2 cut(s)	319, 334
HpyCH4III	ACNGT	2 cut(s)	262, 450
HpyCH4IV	ACGT	3 cut(s)	87, 174, 228
HpyCH4V	TGCA	5 cut(s)	32, 187, 377, 454, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 356, 413, 515
HpyF3I	CTNAG	3 cut(s)	20, 139, 296
HpySE526I	ACGT	3 cut(s)	87, 174, 228
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	191, 284, 389
HspAI	GCGC	2 cut(s)	92, 428
Kzo9I	GATC	3 cut(s)	144, 190, 343
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	400
MaeII	ACGT	3 cut(s)	87, 174, 228
MalI	GATC	3 cut(s)	146, 192, 345
MboI	GATC	3 cut(s)	144, 190, 343
MboII	GAAGA	2 cut(s)	479, 538
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	6 cut(s)	27, 289, 331, 499, 525, 559
MnlI	CCTC	8 cut(s)	15, 46, 193, 244, 279, 291, 487, 531
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	3 cut(s)	75, 241, 417
MspR9I	CCNGG	2 cut(s)	242, 418
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	100, 356, 413, 515
NciI	CCSGG	2 cut(s)	242, 418
NdeII	GATC	3 cut(s)	144, 190, 343
NlaIII	CATG	3 cut(s)	191, 284, 389
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	2 cut(s)	187, 458
PctI	GAATGC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	58, 126, 415, 511
PmaCI	CACGTG	1 cut(s)	229
PmlI	CACGTG	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SatI	GCNGC	4 cut(s)	57, 125, 414, 510
Sau3AI	GATC	3 cut(s)	144, 190, 343
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	242, 418
SduI	GDGCHC	1 cut(s)	260
SinI	GGWCC	1 cut(s)	238
Sse9I	AATT	6 cut(s)	27, 289, 331, 499, 525, 559
SsiI	CCGC	7 cut(s)	57, 94, 125, 197, 254, 272, 510
StyD4I	CCNGG	2 cut(s)	240, 416
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	262, 450
TaiI	ACGT	3 cut(s)	90, 177, 231
TaqI	TCGA	2 cut(s)	206, 218
TasI	AATT	6 cut(s)	27, 289, 331, 499, 525, 559
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	3 cut(s)	59, 127, 512
TscAI	CASTG	2 cut(s)	24, 265
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	24, 265
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	3 cut(s)	289, 331, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.