Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Reverse (-)

9686919 .. 9692276

Gene Structure 5358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0120200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGAAGCAATCACCTACTCATTGTAGGCGGACGTTGTTTAAACTTCAAGTGTTCATTCTTATATGCATGAGCACAGTTCTGGAATCTGCAACACCGCCCACTTTCGGAAATGAATCCGATCTCCTGGCATTACTAAATTTCAAGAGAAGCATCACTAAAGATCCTCGCCATATCATGAGCTCATGGAACAATTCCATCCATTTCTGCAGTTGGGCAGGCGTTACATGCAACCCTTCCAACAATCGAGTCATCATTCTGAACCTGGAGGCTCAAGAACTGGAAGGCTTCATACCACCTTCAATAGGAAATCTTACTTATCTAACTCAACTCAACCTCACAGACAACAAATTTCGTGGTGGAATTCCTCAAGAATTGGGCCGTCTACTGCGCTTGCAACAGCTCAACCTGATGGCCAATTCCTTGCGGGGGAATATTCCAACTAATATATCTCACTGTTCCCAACTAAGAGTGCTCGATCTTGGTGATAATGGACTTACTGGGCCAATTCCAGACCAACTCAGTTCACTGTTTGAGTTGACTCATCTATGGCTCGATACAAACATTCTCACAGGAAGAGTCCCAGCTTGGTTAGGAAACTTTTCTTCTTTGTATGCATTTTCTTTTGGTGAGAACAATCTCCAAGGAAGCATACCCAGTGAGCTAGGGGGTCTAACAAGTTTGAGAAGATTCGTACTTGCAGATAATAATCTTTCTGGTACAGTTCCTTCTTCAATCTACAATATTTCCTCATTATACTACTTCACTGTCACTTCCAACCACCTGCATGGAGAGTTGCCACCAAATGTTGGCATAACTCTTCCTAATCTCGAAGTTTTTGCTGGTGGCGTCAACAAATTCACAGGAAACATTCCTGTATCATTGTCAAATGCTTCTAGACTCCGGTTTCTTGATTTTGCTGAAAATGGTCTTACCGGAAAGCTCCCTGCTGAGTATTTTGGAACCTTGGGAAGGTTAGTGAGAATAAACTTTGATGACAATTCACTGGGAAGTGGGAAAATCGGTGACTTGAATTCTCTCACTTTCCTGGCTAATTGTACTAAGCTTGAGGTGTTGAGTTTTATCAATAATCGTTTTGGAGGAGAATTACCAGAATCCATAGGAAACCTTTCGACCAAACTGAGAGAGTTTAGTATGTCAGGCAATTTGGTACACGGAAGCATCCCTATCGGCATTGGAAATCTTGTAAACTTGACCAAGCTGGAACTAGGAGACAACAATTTGGGTGGTAGTCTTCCTGAAGAAATTGGGAAGCTTCAGAAGTTAGAGGGACTGCTTTTGAATCTTAACAAATTTTCTGGGCCAATCCCATCCTCCTTGGGTAACTTGACTTCACTAACAAAGCTATTCATGGAGGGCAATAGGTTTGAGGGAAGTATACCGCCAAGTCTTGGAAGCTGCAAAAATCTACTAATACTTGACCTTTCCAGTAACAGTCTAAATGGCACGATACCTAAAGAGGTAATTGCGGATTCATCCCTTTCAATTTCATTGACACTGTCTAACAATTACTTGACTGGTTCACTCCCAGATGAAGTGGGTAAGTTGGTGCAACTTACAGAGCTAGATGTATCAGGAAACAAGTTATCAGGTGAGATTCCCACAACCCTTGGCAATTGTGTTAGCTTGGAACGACTTCATTTGGAAGATAATGAATTTGAAGGAACAATTCCACATTCTTTTAAAGATTTAAGAGGCTTGGAGGAAATAGATGTATCGGGAAATCACTTATTTGGTAAGGTTCCTGAATTTTTTGTCCATCTTGGAAATCTTAAGAATCTCAATCTTTCTTATAACCATCTTGAGGGTGAATTGCCTAAAGAAGGGGTTTTTTCAAATGCAACTGGTGTATCAGTTCTCGGAAATGATAAGCTCTGTGGTGGCATCCCAGAATTACTTCTACCTGCATGTTCCAGCAGAAAGCCTCAATCATCTCTAGGAGTACTTGCCACAGAAGTGATAATCCCTGTAAGTTGTGGAATTGCATTAGTAATTGCCTTTTGTTGCTGCATTGCTGGACGTTCAATGGCGAAAAGGTCAAGAGATAGATCCGTAGCATCACGTACTTATGAGGATTGGAAATCAGGTGTCTCTTACACAGAACTCGTTCAATCAACTGACGGGTTCTCTACAAACAATCTGATTGGTTCAGGAAGTTTCGGTTCGGTATACAAAGGATTACTCAGTGGTGAGGGAATGGTGGTTGCTGTTAAGGTATTAAACCTTCAACAAAATGGAGCATCGAAGAGTTTCATTGATGAATGCAAAGCATTAAGAAGTATAAGACACCGCAATCTTCTTAAGATCATAACTGCCTGCTCAAGCATTGATAATCAGGGAAATGACTTCAAAAGTCTAGTTTTCGAGTTCATGGAAAATGGAAGTCTAGACTCTTGGCTGCATCCCAGAGATGATGAGCAATCTCAAGGGAAGAGATTAAGCCTCATCCAAAGACTGAATATTGCCATCGATGTGGCTTCCGCAATAGAATATCTCCACCACTATTGCGAACCATCCATTGTCCATTGTGATCTAAAGCCCAGCAATGTTCTTCTTGATGAAGATATGGTAGCTCATGTTGGTGACTTTGGTTTAGCAAGCTTCCTCTTGGAAGCATCGGATGATCCCTCCGAGATTCAAAGCATATCAGTTGGACTAAAGGGTTCCATAGGCTACATTCCTCAAGAGTACAGCATGGGAGCCAAAGTTTCCATACTAGGAGATATTTATAGCTATGGGATACTGTTGCTAGAAATGTTCACAGGGAGAAGACCTACCGATGACATGTTCAAAGATGGTCTAAGCATTCACCAGTGTACAGCTATGGCGTTGCCTGACCATGTTATGGAAGTTGTTGACCCTTTCTTGCTCATAGAAAGAGATGAAGAGAATGATGATGGTGGCAGAGGCAGAAACGATGTCCAAGAAAGACCAACAAGACATCAGGATCCTGACCTAGTCAAACGAAGAGGAGAGGAGTGCTTGGTTTCAGTTATGCATATAGGAGTCTTATGCTCGTCAATATCACCAAGAGAACGGATATTTATGGATGTCATTGTCAACAAAATGAAGGCTATTAGAGAGTTCTATCTAAAAGTAACAAGAAGAAGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

1044

Amino Acids

114.18

Weight (kDa)

5.63

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	38 - 77	1.1e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	99 - 233	3.5e-09	Leucine-rich repeat region
LRR_14	PF23598	370 - 455	2.7e-07	Leucine-rich repeat region
LRR_14	PF23598	466 - 601	3.3e-09	Leucine-rich repeat region
LRR_8	PF13855	548 - 607	2.5e-10	Leucine rich repeat
Pkinase	PF00069	716 - 936	1.4e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	717 - 937	1.8e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1812
AarI	CACCTGC	1 cut(s)	789
Acc36I	ACCTGC	2 cut(s)	789, 1930
AccB7I	CCANNNNNTGG	3 cut(s)	806, 1409, 2863
AccI	GTMKAC	3 cut(s)	382, 1396, 2187
AciI	CCGC	7 cut(s)	28, 95, 424, 1400, 1487, 2308, 2499
AclWI	GGATC	5 cut(s)	155, 2061, 2636, 2960, 2973
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	8 cut(s)	136, 347, 360, 854, 1030, 1310, 1673, 1766
AcuI	CTGAAG	2 cut(s)	1259, 1278
AcyI	GRCGYC	1 cut(s)	846
AfaI	GTAC	8 cut(s)	693, 718, 1057, 1170, 1962, 2083, 2708, 2836
AfiI	CCNNNNNNNGG	9 cut(s)	104, 302, 426, 806, 969, 1409, 1822, 1841, 2863
AflII	CTTAAG	2 cut(s)	1790, 2318
AflIII	ACRYGT	1 cut(s)	2802
AjnI	CCWGG	3 cut(s)	123, 261, 1044
AleI	CACNNNNGTG	1 cut(s)	1973
Alw21I	GWGCWC	3 cut(s)	74, 182, 474
Alw26I	GTCTC	2 cut(s)	1224, 2113
AlwI	GGATC	5 cut(s)	155, 2061, 2636, 2960, 2973
AoxI	GGCC	4 cut(s)	376, 411, 500, 1319
ApeKI	GCWGC	3 cut(s)	1416, 2025, 2416
ApoI	RAATTY	8 cut(s)	136, 347, 360, 854, 1030, 1310, 1673, 1766
Asp700I	GAANNNNTTC	6 cut(s)	598, 1126, 1653, 1914, 2124, 2267
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	376, 500, 1319
BaeI	ACNNNNGTAYC	2 cut(s)	1851, 1884
BalI	TGGCCA	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	2965
BanII	GRGCYC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	8 cut(s)	273, 305, 709, 741, 1333, 1365, 2226, 2258
BbsI	GAAGAC	2 cut(s)	1244, 2794
Bbv12I	GWGCWC	3 cut(s)	74, 182, 474
BbvI	GCAGC	3 cut(s)	1403, 2012, 2403
BccI	CCATC	9 cut(s)	203, 403, 1336, 1785, 1824, 2492, 2539, 2807, 2909
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	4 cut(s)	818, 852, 1168, 1202
BciT130I	CCWGG	3 cut(s)	125, 263, 1046
BciVI	GTATCC	1 cut(s)	2751
BcoDI	GTCTC	2 cut(s)	1224, 2113
BfmI	CTRYAG	1 cut(s)	205
BfrI	CTTAAG	2 cut(s)	1790, 2318
BfuAI	ACCTGC	2 cut(s)	789, 1930
BfuI	GTATCC	1 cut(s)	2751
BisI	GCNGC	3 cut(s)	1417, 2026, 2417
BlsI	GCNGC	3 cut(s)	1418, 2027, 2418
BmcAI	AGTACT	1 cut(s)	1962
Bme1390I	CCNGG	3 cut(s)	125, 263, 1046
BmgT120I	GGNCC	3 cut(s)	376, 500, 1319
BmiI	GGNNCC	5 cut(s)	961, 1761, 2683, 2719, 2967
BmrFI	CCNGG	3 cut(s)	125, 263, 1046
BmrI	ACTGGG	3 cut(s)	507, 648, 1013
BmsI	GCATC	7 cut(s)	159, 1188, 1911, 2084, 2267, 2428, 2642
BmuI	ACTGGG	3 cut(s)	507, 648, 1013
BpiI	GAAGAC	2 cut(s)	1244, 2794
BpmI	CTGGAG	1 cut(s)	284
BpuEI	CTTGAG	7 cut(s)	255, 351, 1085, 1841, 2323, 2427, 2685
Bsa29I	ATCGAT	1 cut(s)	2487
BsaAI	YACGTR	1 cut(s)	2081
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	846
BsaJI	CCNNGG	4 cut(s)	640, 963, 1335, 1627
BsaWI	WCCGGW	2 cut(s)	900, 932
BsaXI	ACNNNNNCTCC	2 cut(s)	2709, 2739
Bsc4I	CCNNNNNNNGG	9 cut(s)	104, 302, 426, 806, 969, 1409, 1822, 1841, 2863
Bse1I	ACTGG	8 cut(s)	282, 502, 654, 1008, 1446, 1540, 1867, 2830
Bse3DI	GCAATG	2 cut(s)	2028, 2569
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	125, 263, 1046
BseCI	ATCGAT	1 cut(s)	2487
BseDI	CCNNGG	4 cut(s)	640, 963, 1335, 1627
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	9 cut(s)	104, 302, 426, 806, 969, 1409, 1822, 1841, 2863
BseMI	GCAATG	2 cut(s)	2028, 2569
BseMII	CTCAG	4 cut(s)	532, 939, 1130, 2215
BseNI	ACTGG	8 cut(s)	282, 502, 654, 1008, 1446, 1540, 1867, 2830
BseRI	GAGGAG	3 cut(s)	1113, 3003, 3008
BseXI	GCAGC	3 cut(s)	1403, 2012, 2403
BseYI	CCCAGC	2 cut(s)	580, 2558
BshFI	GGCC	4 cut(s)	378, 413, 502, 1321
BshVI	ATCGAT	1 cut(s)	2487
BsiHKAI	GWGCWC	3 cut(s)	74, 182, 474
BsiSI	CCGG	2 cut(s)	901, 933
BslFI	GGGAC	2 cut(s)	563, 1302
BslI	CCNNNNNNNGG	9 cut(s)	104, 302, 426, 806, 969, 1409, 1822, 1841, 2863
BsmAI	GTCTC	2 cut(s)	1224, 2113
BsmFI	GGGAC	2 cut(s)	563, 1302
BsmI	GAATGC	2 cut(s)	2285, 2823
BsnI	GGCC	4 cut(s)	378, 413, 502, 1321
Bsp1286I	GDGCHC	3 cut(s)	74, 182, 474
Bsp1407I	TGTACA	1 cut(s)	2834
Bsp143I	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
BspACI	CCGC	7 cut(s)	28, 95, 424, 1400, 1487, 2308, 2499
BspANI	GGCC	4 cut(s)	378, 413, 502, 1321
BspCNI	CTCAG	4 cut(s)	531, 940, 1131, 2214
BspDI	ATCGAT	1 cut(s)	2487
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	5 cut(s)	961, 1761, 2683, 2719, 2967
BspMAI	CTGCAG	1 cut(s)	209
BspMI	ACCTGC	2 cut(s)	789, 1930
BspPI	GGATC	5 cut(s)	155, 2061, 2636, 2960, 2973
BspTI	CTTAAG	2 cut(s)	1790, 2318
BsrDI	GCAATG	2 cut(s)	2028, 2569
BsrGI	TGTACA	1 cut(s)	2834
BsrI	ACTGG	8 cut(s)	282, 502, 654, 1008, 1446, 1540, 1867, 2830
BssECI	CCNNGG	4 cut(s)	640, 963, 1335, 1627
BssMI	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
BssNAI	GTATAC	2 cut(s)	1397, 2188
BssNI	GRCGYC	1 cut(s)	846
BssT1I	CCWWGG	4 cut(s)	640, 963, 1335, 1627
Bst1107I	GTATAC	2 cut(s)	1397, 2188
Bst2UI	CCWGG	3 cut(s)	125, 263, 1046
Bst4CI	ACNGT	8 cut(s)	76, 455, 528, 721, 766, 1454, 1518, 2763
Bst6I	CTCTTC	6 cut(s)	568, 822, 2258, 2444, 2898, 2980
BstACI	GRCGYC	1 cut(s)	846
BstAFI	CTTAAG	2 cut(s)	1790, 2318
BstAUI	TGTACA	1 cut(s)	2834
BstBAI	YACGTR	1 cut(s)	2081
BstC8I	GCNNGC	4 cut(s)	217, 392, 2335, 2617
BstDEI	CTNAG	7 cut(s)	464, 518, 948, 1059, 1139, 2201, 2819
BstENI	CCTNNNNNAGG	3 cut(s)	300, 967, 1839
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	8 cut(s)	121, 163, 478, 2069, 2325, 2551, 2644, 2968
BstMAI	GTCTC	2 cut(s)	1224, 2113
BstMBI	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	3 cut(s)	125, 263, 1046
BstNSI	RCATGY	3 cut(s)	228, 1929, 2806
BstSCI	CCNGG	3 cut(s)	123, 261, 1044
BstSFI	CTRYAG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	1403, 2012, 2403
BstV2I	GAAGAC	2 cut(s)	1244, 2794
BstX2I	RGATCY	3 cut(s)	160, 2066, 2965
BstXI	CCANNNNNNTGG	2 cut(s)	785, 2491
BstYI	RGATCY	3 cut(s)	160, 2066, 2965
BstZ17I	GTATAC	2 cut(s)	1397, 2188
Bsu15I	ATCGAT	1 cut(s)	2487
BsuI	GTATCC	1 cut(s)	2751
BsuRI	GGCC	4 cut(s)	378, 413, 502, 1321
BsuTUI	ATCGAT	1 cut(s)	2487
BtsIMutI	CAGTG	8 cut(s)	451, 524, 661, 762, 1001, 1514, 2209, 2837
BveI	ACCTGC	2 cut(s)	789, 1930
Cac8I	GCNNGC	4 cut(s)	217, 392, 2335, 2617
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	3 cut(s)	376, 500, 1319
ClaI	ATCGAT	1 cut(s)	2487
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	8 cut(s)	692, 717, 1056, 1169, 1961, 2082, 2707, 2835
CspCI	CAANNNNNGTGG	8 cut(s)	334, 369, 1225, 1260, 1609, 1644, 2504, 2539
CviQI	GTAC	8 cut(s)	692, 717, 1056, 1169, 1961, 2082, 2707, 2835
DdeI	CTNAG	7 cut(s)	464, 518, 948, 1059, 1139, 2201, 2819
DpnI	GATC	8 cut(s)	120, 162, 477, 2068, 2324, 2550, 2643, 2967
DpnII	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
DraI	TTTAAA	2 cut(s)	40, 1702
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	6 cut(s)	568, 822, 2258, 2444, 2898, 2980
EarI	CTCTTC	6 cut(s)	568, 822, 2258, 2444, 2898, 2980
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	4 cut(s)	640, 963, 1335, 1627
Eco24I	GRGCYC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	1259, 1278
EcoICRI	GAGCTC	1 cut(s)	180
EcoNI	CCTNNNNNAGG	3 cut(s)	300, 967, 1839
EcoRI	GAATTC	2 cut(s)	360, 1030
EcoRII	CCWGG	3 cut(s)	123, 261, 1044
EcoT14I	CCWWGG	4 cut(s)	640, 963, 1335, 1627
EcoT22I	ATGCAT	3 cut(s)	68, 616, 3018
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	4 cut(s)	640, 963, 1335, 1627
FaqI	GGGAC	2 cut(s)	563, 1302
FauI	CCCGC	1 cut(s)	417
FblI	GTMKAC	3 cut(s)	382, 1396, 2187
Fnu4HI	GCNGC	3 cut(s)	1417, 2026, 2417
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	1417, 2026, 2417
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	3 cut(s)	1417, 2026, 2417
GsaI	CCCAGC	2 cut(s)	584, 2562
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	4 cut(s)	378, 413, 502, 1321
HapII	CCGG	2 cut(s)	901, 933
HgaI	GACGC	1 cut(s)	835
HhaI	GCGC	1 cut(s)	390
Hin1I	GRCGYC	1 cut(s)	846
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	4 cut(s)	537, 850, 2875, 3079
HindII	GTYRAC	4 cut(s)	537, 850, 2875, 3079
HindIII	AAGCTT	3 cut(s)	1061, 1271, 2617
HpaII	CCGG	2 cut(s)	901, 933
Hpy188I	TCNGA	8 cut(s)	107, 118, 258, 1278, 1880, 2160, 2638, 2650
HpyCH4III	ACNGT	8 cut(s)	76, 455, 528, 721, 766, 1454, 1518, 2763
HpyCH4IV	ACGT	3 cut(s)	32, 2038, 2080
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	7 cut(s)	464, 518, 948, 1059, 1139, 2201, 2819
HpySE526I	ACGT	3 cut(s)	32, 2038, 2080
Hsp92I	GRCGYC	1 cut(s)	846
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
LmnI	GCTCC	4 cut(s)	945, 2255, 2717, 3129
Lsp1109I	GCAGC	3 cut(s)	1403, 2012, 2403
LweI	GCATC	7 cut(s)	159, 1188, 1911, 2084, 2267, 2428, 2642
MaeII	ACGT	3 cut(s)	32, 2038, 2080
MaeIII	GTNAC	7 cut(s)	220, 766, 1022, 1340, 1448, 2600, 3115
MalI	GATC	8 cut(s)	120, 162, 477, 2068, 2324, 2550, 2643, 2967
MboI	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
MfeI	CAATTG	1 cut(s)	1633
MflI	RGATCY	3 cut(s)	160, 2066, 2965
MhlI	GDGCHC	3 cut(s)	74, 182, 474
MlsI	TGGCCA	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	6 cut(s)	255, 532, 585, 891, 2402, 3033
MmeI	TCCRAC	4 cut(s)	261, 461, 798, 2650
Mox20I	TGGCCA	1 cut(s)	413
Mph1103I	ATGCAT	3 cut(s)	68, 616, 3018
MroXI	GAANNNNTTC	6 cut(s)	598, 1126, 1653, 1914, 2124, 2267
MscI	TGGCCA	1 cut(s)	413
MslI	CAYNNNNRTG	4 cut(s)	783, 1973, 2489, 2598
Msp20I	TGGCCA	1 cut(s)	413
MspCI	CTTAAG	2 cut(s)	1790, 2318
MspI	CCGG	2 cut(s)	901, 933
MspR9I	CCNGG	3 cut(s)	125, 263, 1046
MssI	GTTTAAAC	1 cut(s)	40
MunI	CAATTG	1 cut(s)	1633
Mva1269I	GAATGC	2 cut(s)	2285, 2823
MvaI	CCWGG	3 cut(s)	125, 263, 1046
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
NlaIV	GGNNCC	5 cut(s)	961, 1761, 2683, 2719, 2967
NmuCI	GTSAC	3 cut(s)	766, 1022, 2600
NsiI	ATGCAT	3 cut(s)	68, 616, 3018
NspI	RCATGY	3 cut(s)	228, 1929, 2806
OliI	CACNNNNGTG	1 cut(s)	1973
PagI	TCATGA	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	789
PciI	ACATGT	1 cut(s)	2802
PctI	GAATGC	2 cut(s)	2285, 2823
PdmI	GAANNNNTTC	6 cut(s)	598, 1126, 1653, 1914, 2124, 2267
PfeI	GAWTC	9 cut(s)	83, 113, 687, 1112, 1300, 1490, 1615, 1795, 2653
PflFI	GACNNNGTC	2 cut(s)	1516, 2975
PflMI	CCANNNNNTGG	3 cut(s)	806, 1409, 2863
PkrI	GCNGC	3 cut(s)	1418, 2027, 2418
PleI	GAGTC	6 cut(s)	254, 532, 584, 891, 2402, 3032
PmeI	GTTTAAAC	1 cut(s)	40
PpsI	GAGTC	6 cut(s)	254, 532, 584, 891, 2402, 3032
Ppu21I	YACGTR	1 cut(s)	2081
PscI	ACATGT	1 cut(s)	2802
PsiI	TTATAA	1 cut(s)	1812
Psp124BI	GAGCTC	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	123, 261, 1044
PspFI	CCCAGC	2 cut(s)	580, 2558
PspGI	CCWGG	3 cut(s)	123, 261, 1044
PspN4I	GGNNCC	5 cut(s)	961, 1761, 2683, 2719, 2967
PspPI	GGNCC	3 cut(s)	376, 500, 1319
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	160, 2066, 2965
PsyI	GACNNNGTC	2 cut(s)	1516, 2975
RsaI	GTAC	8 cut(s)	693, 718, 1057, 1170, 1962, 2083, 2708, 2836
RsaNI	GTAC	8 cut(s)	692, 717, 1056, 1169, 1961, 2082, 2707, 2835
RseI	CAYNNNNRTG	4 cut(s)	783, 1973, 2489, 2598
SacI	GAGCTC	1 cut(s)	182
SatI	GCNGC	3 cut(s)	1417, 2026, 2417
Sau3AI	GATC	8 cut(s)	118, 160, 475, 2066, 2322, 2548, 2641, 2965
Sau96I	GGNCC	3 cut(s)	376, 500, 1319
ScaI	AGTACT	1 cut(s)	1962
SchI	GAGTC	6 cut(s)	255, 532, 585, 891, 2402, 3033
ScrFI	CCNGG	3 cut(s)	125, 263, 1046
SduI	GDGCHC	3 cut(s)	74, 182, 474
SfaNI	GCATC	7 cut(s)	159, 1188, 1911, 2084, 2267, 2428, 2642
SfcI	CTRYAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	4 cut(s)	783, 1973, 2489, 2598
SmlI	CTYRAG	9 cut(s)	270, 366, 1064, 1790, 1820, 2318, 2338, 2442, 2700
SmoI	CTYRAG	9 cut(s)	270, 366, 1064, 1790, 1820, 2318, 2338, 2442, 2700
SsiI	CCGC	7 cut(s)	28, 95, 424, 1400, 1487, 2308, 2499
SspI	AATATT	3 cut(s)	433, 742, 2479
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	3 cut(s)	123, 261, 1044
StyI	CCWWGG	4 cut(s)	640, 963, 1335, 1627
TaaI	ACNGT	8 cut(s)	76, 455, 528, 721, 766, 1454, 1518, 2763
TaiI	ACGT	3 cut(s)	35, 2041, 2083
TaqI	TCGA	8 cut(s)	244, 474, 552, 828, 1130, 2261, 2382, 2487
TatI	WGTACW	4 cut(s)	1055, 1960, 2706, 2834
TfiI	GAWTC	9 cut(s)	83, 113, 687, 1112, 1300, 1490, 1615, 1795, 2653
TscAI	CASTG	8 cut(s)	458, 531, 661, 769, 1008, 1521, 2209, 2837
TseFI	GTSAC	3 cut(s)	766, 1022, 2600
TseI	GCWGC	3 cut(s)	1416, 2025, 2416
Tsp45I	GTSAC	3 cut(s)	766, 1022, 2600
TspGWI	ACGGA	3 cut(s)	1188, 2059, 3070
TspRI	CASTG	8 cut(s)	458, 531, 661, 769, 1008, 1521, 2209, 2837
Tth111I	GACNNNGTC	2 cut(s)	1516, 2975
Van91I	CCANNNNNTGG	3 cut(s)	806, 1409, 2863
Vha464I	CTTAAG	2 cut(s)	1790, 2318
XagI	CCTNNNNNAGG	3 cut(s)	300, 967, 1839
XapI	RAATTY	8 cut(s)	136, 347, 360, 854, 1030, 1310, 1673, 1766
XbaI	TCTAGA	2 cut(s)	893, 2404
XceI	RCATGY	3 cut(s)	228, 1929, 2806
XmiI	GTMKAC	3 cut(s)	382, 1396, 2187
XmnI	GAANNNNTTC	6 cut(s)	598, 1126, 1653, 1914, 2124, 2267
ZrmI	AGTACT	1 cut(s)	1962
Zsp2I	ATGCAT	3 cut(s)	68, 616, 3018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.