Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Forward (+)

11058305 .. 11059665

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG132100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGAACGAGAAGCCACTGAGGAAAATTGCAGAAGCATTCAAGGAGCTGGAGGCCGCCGTGAAATCGGAGACCGGCGAAGTGGAGGTGGCGCGGTTCTCGCAGGCTTGCTCTCTCGTCTCGCCGCTGTTCGGGTGCTTAGGGATCGCTTTCAAGTTCGCCGAGATGGACTACGTCGCAAAGGTGCATGATCTGGCGGAGGCGTCGAAATCAATCTCGACCCTACACGTGTTGGTGGACCGGGATATGGAGGCGGGCACTGTGAGAAAGGCGGGTGGTCATGCGAGGAATTTGCTGAGGGTGAAGCGTGGGATTGATATGGTGAAGGTGCTGTTTGAGCAGATTATAGTCACCGAGGGAAATTCCTTGAAGGATCCAGCTTCCAAGGCATATCAACAGGTGTTTGCACCCCATCATGGGTGGGTCATCAGGAAAGCTGTTGCTGCCGGGATGTATGCGCTTCCTACAAAAGAACAACTGTTGCACAAACTCAATGAAGATGGTGAGTCTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

172

Amino Acids

18.86

Weight (kDa)

7.8

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	28 - 166	8e-41	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	6 cut(s)	57, 94, 125, 197, 254, 272
AclWI	GGATC	3 cut(s)	152, 368, 381
AcsI	RAATTY	2 cut(s)	289, 361
AcvI	CACGTG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	203
AfiI	CCNNNNNNNGG	4 cut(s)	131, 247, 416, 417
AflIII	ACRYGT	2 cut(s)	226, 228
AgsI	TTSAA	3 cut(s)	43, 154, 370
AluBI	AGCT	3 cut(s)	49, 380, 437
AluI	AGCT	3 cut(s)	49, 380, 437
Alw26I	GTCTC	2 cut(s)	65, 124
AlwI	GGATC	3 cut(s)	152, 368, 381
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	289, 361
AspLEI	GCGC	2 cut(s)	94, 460
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	2 cut(s)	242, 448
AsuHPI	GGTGA	4 cut(s)	313, 334, 343, 515
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	229
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	3 cut(s)	160, 420, 494
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcnI	CCSGG	2 cut(s)	242, 448
BcoDI	GTCTC	2 cut(s)	65, 124
BisI	GCNGC	3 cut(s)	57, 125, 444
BlsI	GCNGC	3 cut(s)	58, 126, 445
Bme1390I	CCNGG	2 cut(s)	242, 448
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	242, 448
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	139, 296
BpuMI	CCSGG	2 cut(s)	242, 448
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 247, 416, 417
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	354, 384
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	4 cut(s)	131, 247, 416, 417
BseMII	CTCAG	2 cut(s)	11, 287
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	75, 241, 447
BslI	CCNNNNNNNGG	4 cut(s)	131, 247, 416, 417
BsmAI	GTCTC	2 cut(s)	65, 124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	144, 190, 373
BspACI	CCGC	6 cut(s)	57, 94, 125, 197, 254, 272
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	12, 288
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	152, 368, 381
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	354, 384
BssMI	GATC	3 cut(s)	144, 190, 373
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	262, 480
BstACI	GRCGYC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	105, 109, 256
BstDEI	CTNAG	3 cut(s)	20, 139, 296
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	94, 460
BstKTI	GATC	3 cut(s)	147, 193, 376
BstMAI	GTCTC	2 cut(s)	65, 124
BstMBI	GATC	3 cut(s)	144, 190, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 337, 386, 443
BstSCI	CCNGG	2 cut(s)	240, 446
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	17, 258
Cac8I	GCNNGC	3 cut(s)	105, 109, 256
CfoI	GCGC	2 cut(s)	94, 460
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	192
CviAII	CATG	3 cut(s)	188, 281, 416
CviJI	RGCY	6 cut(s)	16, 49, 56, 107, 380, 437
CviKI_1	RGCY	6 cut(s)	16, 49, 56, 107, 380, 437
DdeI	CTNAG	3 cut(s)	20, 139, 296
DpnI	GATC	3 cut(s)	146, 192, 375
DpnII	GATC	3 cut(s)	144, 190, 373
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	238
Eco72I	CACGTG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	191, 284, 419
FaiI	YATR	9 cut(s)	189, 248, 282, 320, 347, 391, 417, 456, 517
FatI	CATG	3 cut(s)	187, 280, 415
FauI	CCCGC	2 cut(s)	247, 265
Fnu4HI	GCNGC	3 cut(s)	57, 125, 444
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	3 cut(s)	57, 125, 444
GlaI	GCGC	2 cut(s)	93, 459
GluI	GCNGC	3 cut(s)	57, 125, 444
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	75, 241, 447
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	94, 460
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	191, 284, 419
Hin6I	GCGC	2 cut(s)	92, 458
HinP1I	GCGC	2 cut(s)	92, 458
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	3 cut(s)	75, 241, 447
HphI	GGTGA	4 cut(s)	313, 334, 343, 515
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	217, 430
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	179, 208
HpyAV	CCTTC	2 cut(s)	319, 364
HpyCH4III	ACNGT	2 cut(s)	262, 480
HpyCH4IV	ACGT	2 cut(s)	174, 228
HpyCH4V	TGCA	4 cut(s)	32, 187, 407, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 337, 386, 443
HpyF3I	CTNAG	3 cut(s)	20, 139, 296
HpySE526I	ACGT	2 cut(s)	174, 228
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	191, 284, 419
HspAI	GCGC	2 cut(s)	92, 458
Kzo9I	GATC	3 cut(s)	144, 190, 373
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	9 cut(s)	35, 88, 89, 179, 254, 383, 390, 415, 460
Lsp1109I	GCAGC	1 cut(s)	430
MaeII	ACGT	2 cut(s)	174, 228
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	146, 192, 375
MboI	GATC	3 cut(s)	144, 190, 373
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	3 cut(s)	27, 289, 361
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	8 cut(s)	15, 46, 79, 193, 244, 279, 291, 349
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	3 cut(s)	75, 241, 447
MspR9I	CCNGG	2 cut(s)	242, 448
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	100, 337, 386, 443
NciI	CCSGG	2 cut(s)	242, 448
NdeII	GATC	3 cut(s)	144, 190, 373
NlaIII	CATG	3 cut(s)	191, 284, 419
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	349
PctI	GAATGC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	58, 126, 445
PleI	GAGTC	1 cut(s)	514
PmaCI	CACGTG	1 cut(s)	229
PmlI	CACGTG	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	173
SatI	GCNGC	3 cut(s)	57, 125, 444
Sau3AI	GATC	3 cut(s)	144, 190, 373
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	242, 448
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	9 cut(s)	51, 90, 177, 186, 231, 330, 382, 402, 439
SinI	GGWCC	1 cut(s)	238
Sse9I	AATT	3 cut(s)	27, 289, 361
SsiI	CCGC	6 cut(s)	57, 94, 125, 197, 254, 272
StyD4I	CCNGG	2 cut(s)	240, 446
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	262, 480
TaiI	ACGT	2 cut(s)	177, 231
TaqI	TCGA	2 cut(s)	206, 218
TasI	AATT	3 cut(s)	27, 289, 361
TauI	GCSGC	2 cut(s)	59, 127
TscAI	CASTG	2 cut(s)	24, 265
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	504, 510
TspRI	CASTG	2 cut(s)	24, 265
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	2 cut(s)	289, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.