Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002323.1

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Forward (+)

40894 .. 41615

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002323.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcgaacgagaagcctctgaggaaaattgcagaggcattcaaggagctagaggcggccgtgaaattggagaccagcgaagtggcggtggcgcggttctcgcaggcgtgttctctcgtctcgttgctgttcggatgcttaggtatcgctttcaagttggtgaaccgggatatggatgcgggcactgtgagaaaggtgggtactcatgcgaggaagttgctaagagtgaagcatgggattgatatggtgaaggtgctgtttgagcagattatagtcaccaagtatgttacattgcttcaactggtttataaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

105

Amino Acids

11.72

Weight (kDa)

9.7

Isoelectric Point (pI)

11.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	56, 86, 94, 179
AcoI	YGGCCR	1 cut(s)	57
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	43, 154, 299
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	65, 124
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	172, 259, 268
BaeGI	GKGCMC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	65, 124
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	125, 166
Bpu10I	CCTNAGC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	140, 181
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	65, 124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	185
BspACI	CCGC	4 cut(s)	56, 86, 94, 179
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	105, 181
BstDEI	CTNAG	3 cut(s)	20, 139, 221
BstF5I	GGATG	2 cut(s)	140, 181
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	94
BstMAI	GTCTC	2 cut(s)	65, 124
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 262
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	140, 181
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	105, 181
CfoI	GCGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	2 cut(s)	206, 233
CviJI	RGCY	3 cut(s)	16, 49, 59
CviKI_1	RGCY	3 cut(s)	16, 49, 59
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	20, 139, 221
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	65
Eco52I	CGGCCG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	209, 236
FaiI	YATR	7 cut(s)	173, 207, 234, 245, 272, 285, 309
FatI	CATG	2 cut(s)	205, 232
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	147, 188
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	209, 236
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	3 cut(s)	172, 259, 268
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	21, 134
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 262
HpyF3I	CTNAG	3 cut(s)	20, 139, 221
Hsp92II	CATG	2 cut(s)	209, 236
HspAI	GCGC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	88, 89, 179, 287
LweI	GCATC	2 cut(s)	125, 166
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	274, 286
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	2 cut(s)	27, 65
MnlI	CCTC	5 cut(s)	15, 27, 28, 46, 204
MseI	TTAA	1 cut(s)	316
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	100, 262
NciI	CCSGG	1 cut(s)	167
NlaIII	CATG	2 cut(s)	209, 236
NmuCI	GTSAC	1 cut(s)	274
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	309
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	51, 145, 198, 255
SfaNI	GCATC	2 cut(s)	125, 166
Sse9I	AATT	2 cut(s)	27, 65
SsiI	CCGC	4 cut(s)	56, 86, 94, 179
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	2 cut(s)	27, 65
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspRI	CASTG	1 cut(s)	190
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.