Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Reverse (-)

40903586 .. 40906140

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1274400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTCATCCTAATCCGACGTAAGGATATTCTAATCCCGAAGTGGAGCATAGACTTACACGTGTTCAAACACCCCCAAATTATTTTATTCATTTCTTCGCCTTCACTGCGTTGGTATGCAGCAAAGCAAACGAACATTTCCCGGCACAAAAGCAAAATACTAACACTGAGAATACTTGTAGAGAGAGAAAGAGAGGAGAGAGAGAGAGCTGCAATGACGGACGAGAAGCCGCTGAGGAAGATAGCGGAGGCATTCAAAGAGCTGGAGGCAGCCGTAAACTCCCAAGCGGCGGAAGTCGAGGTCGCTCCCTTCTCTCGCGCGTGCTCGCTCGTTTCGCCTCTGTTCGGCTGCTTGGGCATCGCCTTTAAGTTCGCCGAGATGGACTACGTCGCCAAGGTCCATGATCTGTCGGAGGCGTCGAATTCAATATCGACATTGCAGGTTCTGCTCGATCGCGATATCGAAGCGGGTTGCGTGAGAAAAGGCGGCAGTCATTCGAGGAATTTGTTGAGAGTGAAGCGTGGGATCGACATGGTTAGAGTGCTCTTCGAGCAAATTATAGTCACCAAGGGAAATTCTCTGAAGGATCCAGCTTCCAAGGCTTATGCACAAGTGTTTGCTCCCCACCATGGATGGGTCATCAGGAAAGCTGTTGCTGCAGGGATGTATGCGCTTCCTACTAAGAAACAACTACTGAATAAACTCAATGAAGATGAGAACTCAGCAAGAGTTCAAATGCAGAGTTACATCGCTGCTTCGGCACCTCTAATTCTGTACATCGACAAACTCTTCCATTCGAGGAAATTGGGCATAGATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

274

Amino Acids

30.93

Weight (kDa)

9.7

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	99 - 237	2.6e-41	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	760
AccII	CGCG	3 cut(s)	318, 320, 456
AciI	CCGC	6 cut(s)	230, 245, 287, 290, 467, 486
AclWI	GGATC	3 cut(s)	533, 581, 594
AcsI	RAATTY	3 cut(s)	421, 502, 574
AcuI	CTGAAG	1 cut(s)	602
AcvI	CACGTG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	5 cut(s)	22, 289, 344, 629, 634
AflIII	ACRYGT	2 cut(s)	58, 60
AgsI	TTSAA	4 cut(s)	67, 256, 426, 734
AluBI	AGCT	4 cut(s)	209, 262, 593, 650
AluI	AGCT	4 cut(s)	209, 262, 593, 650
Alw21I	GWGCWC	2 cut(s)	326, 546
AlwI	GGATC	3 cut(s)	533, 581, 594
AlwNI	CAGNNNCTG	1 cut(s)	445
ApeKI	GCWGC	6 cut(s)	119, 209, 269, 348, 656, 752
ApoI	RAATTY	3 cut(s)	421, 502, 574
AspLEI	GCGC	2 cut(s)	320, 673
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	760
BbrPI	CACGTG	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	326, 546
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	6 cut(s)	131, 196, 281, 335, 643, 739
BccI	CCATC	2 cut(s)	373, 627
BceAI	ACGGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	9 cut(s)	120, 210, 230, 270, 288, 349, 487, 657, 753
BlsI	GCNGC	9 cut(s)	121, 211, 231, 271, 289, 350, 488, 658, 754
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	588, 762
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	4 cut(s)	393, 567, 597, 628
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 289, 344, 629, 634
Bse3DI	GCAATG	2 cut(s)	219, 434
BseDI	CCNNGG	4 cut(s)	393, 567, 597, 628
BseGI	GGATG	3 cut(s)	6, 638, 669
BseLI	CCNNNNNNNGG	5 cut(s)	22, 289, 344, 629, 634
BseMI	GCAATG	2 cut(s)	219, 434
BseMII	CTCAG	3 cut(s)	158, 224, 735
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	6 cut(s)	131, 196, 281, 335, 643, 739
Bsh1236I	CGCG	3 cut(s)	318, 320, 456
Bsh1285I	CGRYCG	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	760
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	326, 546
BsiSI	CCGG	1 cut(s)	142
BslI	CCNNNNNNNGG	5 cut(s)	22, 289, 344, 629, 634
BsmI	GAATGC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	326, 546
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	4 cut(s)	403, 451, 525, 586
Bsp19I	CCATGG	1 cut(s)	628
Bsp68I	TCGCGA	1 cut(s)	456
BspACI	CCGC	6 cut(s)	230, 245, 287, 290, 467, 486
BspCNI	CTCAG	3 cut(s)	159, 225, 734
BspFNI	CGCG	3 cut(s)	318, 320, 456
BspLI	GGNNCC	2 cut(s)	588, 762
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	533, 581, 594
BspQI	GCTCTTC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	760
BsrDI	GCAATG	2 cut(s)	219, 434
BsrGI	TGTACA	1 cut(s)	774
BssECI	CCNNGG	4 cut(s)	393, 567, 597, 628
BssMI	GATC	4 cut(s)	403, 451, 525, 586
BssNI	GRCGYC	1 cut(s)	416
BssT1I	CCWWGG	4 cut(s)	393, 567, 597, 628
Bst6I	CTCTTC	2 cut(s)	551, 794
BstACI	GRCGYC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstAUI	TGTACA	1 cut(s)	774
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	322, 326
BstDEI	CTNAG	4 cut(s)	167, 233, 681, 721
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	6, 638, 669
BstFNI	CGCG	3 cut(s)	318, 320, 456
BstHHI	GCGC	2 cut(s)	320, 673
BstKTI	GATC	4 cut(s)	406, 454, 528, 589
BstMBI	GATC	4 cut(s)	403, 451, 525, 586
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	8 cut(s)	106, 334, 354, 445, 550, 599, 656, 758
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	657
BstUI	CGCG	3 cut(s)	318, 320, 456
BstV1I	GCAGC	6 cut(s)	131, 196, 281, 335, 643, 739
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	628
BtgZI	GCGATG	2 cut(s)	343, 733
BtsCI	GGATG	3 cut(s)	6, 638, 669
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 164
BtuMI	TCGCGA	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	322, 326
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	2 cut(s)	320, 673
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	3 cut(s)	401, 532, 629
CviJI	RGCY	8 cut(s)	209, 229, 262, 272, 348, 593, 602, 650
CviKI_1	RGCY	8 cut(s)	209, 229, 262, 272, 348, 593, 602, 650
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	4 cut(s)	167, 233, 681, 721
DpnI	GATC	4 cut(s)	405, 453, 527, 588
DpnII	GATC	4 cut(s)	403, 451, 525, 586
Eam1104I	CTCTTC	2 cut(s)	551, 794
EarI	CTCTTC	2 cut(s)	551, 794
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	4 cut(s)	393, 567, 597, 628
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	4 cut(s)	393, 567, 597, 628
ErhI	CCWWGG	4 cut(s)	393, 567, 597, 628
FaeI	CATG	3 cut(s)	404, 535, 632
FaiI	YATR	9 cut(s)	50, 117, 402, 533, 560, 606, 630, 669, 812
FatI	CATG	3 cut(s)	400, 531, 628
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	9 cut(s)	120, 210, 230, 270, 288, 349, 487, 657, 753
FokI	GGATG	2 cut(s)	645, 676
Fsp4HI	GCNGC	9 cut(s)	120, 210, 230, 270, 288, 349, 487, 657, 753
GlaI	GCGC	2 cut(s)	319, 672
GluI	GCNGC	9 cut(s)	120, 210, 230, 270, 288, 349, 487, 657, 753
GsuI	CTGGAG	1 cut(s)	284
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	2 cut(s)	320, 673
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	3 cut(s)	404, 535, 632
Hin6I	GCGC	2 cut(s)	318, 671
HinP1I	GCGC	2 cut(s)	318, 671
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	17, 412, 582
Hpy188III	TCNNGA	3 cut(s)	37, 455, 643
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	3 cut(s)	21, 392, 421
HpyAV	CCTTC	3 cut(s)	111, 319, 577
HpyCH4IV	ACGT	3 cut(s)	19, 60, 387
HpyCH4V	TGCA	6 cut(s)	119, 212, 439, 608, 659, 739
HpyF10VI	GCNNNNNNNGC	8 cut(s)	106, 334, 354, 445, 550, 599, 656, 758
HpyF3I	CTNAG	4 cut(s)	167, 233, 681, 721
HpySE526I	ACGT	3 cut(s)	19, 60, 387
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	404, 535, 632
HspAI	GCGC	2 cut(s)	318, 671
Kzo9I	GATC	4 cut(s)	403, 451, 525, 586
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	3 cut(s)	45, 310, 625
LpnPI	CCDG	6 cut(s)	155, 248, 425, 603, 628, 645
Lsp1109I	GCAGC	6 cut(s)	131, 196, 281, 335, 643, 739
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	3 cut(s)	19, 60, 387
MaeIII	GTNAC	2 cut(s)	562, 743
MalI	GATC	4 cut(s)	405, 453, 527, 588
MboI	GATC	4 cut(s)	403, 451, 525, 586
MboII	GAAGA	5 cut(s)	87, 250, 538, 722, 781
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	2 cut(s)	326, 546
MluCI	AATT	7 cut(s)	78, 421, 502, 555, 574, 768, 803
MmeI	TCCRAC	2 cut(s)	40, 390
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	251
MvnI	CGCG	3 cut(s)	318, 320, 456
MwoI	GCNNNNNNNGC	8 cut(s)	106, 334, 354, 445, 550, 599, 656, 758
NciI	CCSGG	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	4 cut(s)	403, 451, 525, 586
NlaIII	CATG	3 cut(s)	404, 535, 632
NlaIV	GGNNCC	2 cut(s)	588, 762
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	562
NruI	TCGCGA	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	9 cut(s)	121, 211, 231, 271, 289, 350, 488, 658, 754
Ple19I	CGATCG	1 cut(s)	454
PmaCI	CACGTG	1 cut(s)	61
PmlI	CACGTG	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	61
PspCI	CACGTG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	588, 762
PspPI	GGNCC	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	386
PvuI	CGATCG	1 cut(s)	454
RruI	TCGCGA	1 cut(s)	456
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	9 cut(s)	120, 210, 230, 270, 288, 349, 487, 657, 753
Sau3AI	GATC	4 cut(s)	403, 451, 525, 586
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	326, 546
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	397
Sse9I	AATT	7 cut(s)	78, 421, 502, 555, 574, 768, 803
SsiI	CCGC	6 cut(s)	230, 245, 287, 290, 467, 486
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	4 cut(s)	393, 567, 597, 628
TaiI	ACGT	3 cut(s)	22, 63, 390
TasI	AATT	7 cut(s)	78, 421, 502, 555, 574, 768, 803
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	3 cut(s)	232, 290, 489
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	111, 171
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	6 cut(s)	119, 209, 269, 348, 656, 752
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	2 cut(s)	79, 723
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	111, 171
Tth111I	GACNNNGTC	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	3 cut(s)	421, 502, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.