Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013251

Physical Location & Seq

Genomic Coordinates Reverse (-)

34653704 .. 34655889

Gene Structure 2186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1254100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGGACGAGAGGCCGCTGAGGAAGATAGCGGAGGCATTCAAAGAGCTCGAGGCGGCCGTAAACTCCCCAGCGGCGGACGTCGAGTTGGCTCCGTTCTCTCTTGCGTGCTCGCTCGTTTCGCCTCTGTTCGGCTGCTTAGGAATCGCCTTCAAGTTCGCCGAGATGGACTACGTCGCCAAGGTCCATGATCTATCGGAGGCCTCGGATTCAATCTCGACGTTGCAGGTTCTGCTCGATCGCGATATCGAAGCGGATTGCGTGAGAAAAGCCGGTAGTCACTCGAGGAATTTGTTGAGAGTGAAGCGTGGGATTGACATGGTTAGAGTACTCTTCGAGCAGATTATAGTCACCAAGGGAAATTCCCTGAAGGATCCAGCTTCCAAGGCTTACGCACAGGTGTTTGCTCCCCACCATGGATGGGTCATCAGGAAAGCTGTTGCAGCAGGGATGTATGCGCTTCCTACTAGGGAACAACTAATGAACAAACTCAATGAAGACGATAACTCGGCAAAAGTTCAAATGCAGAGTTATATCGCTGCGTCTGCACCTCTAAGTCTGTACATCGACAAACTCTTCCATTCGCGGAAATTGGGCGTAGATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

203

Amino Acids

22.31

Weight (kDa)

6.96

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	28 - 166	1.9e-41	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34690
fragaria_vesca	FvH4_3g09960
malus_domestica	MD05G1274400.v1.1 MD10G1254100.v1.1
prunus_persica	Prupe.4G089300_v2.0.a1
pyrus_communis	pycom10g20980
rosa_chinensis	RchiOBHm_Chr5g0015711
rosa_laevigata	RLG00000032221
rosa_multiflora	Rmu_sc0000843.1_g000010 Rmu_sc0002323.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060810
rosa_rugosa	Rorug03G0120200 Rorug05G0029400
rosa_samantha	Rh3DG177800 Rh5AG122700 Rh5CG132100 Rh5DG120700
rosa_wichuraiana	Rw5G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	2 cut(s)	243, 586
AciI	CCGC	8 cut(s)	5, 17, 32, 56, 74, 77, 254, 586
AclWI	GGATC	2 cut(s)	368, 381
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	289, 361
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	330, 563
AfiI	CCNNNNNNNGG	4 cut(s)	76, 131, 416, 421
AgsI	TTSAA	4 cut(s)	43, 154, 213, 521
AluBI	AGCT	3 cut(s)	49, 380, 437
AluI	AGCT	3 cut(s)	49, 380, 437
Alw21I	GWGCWC	2 cut(s)	51, 113
AlwI	GGATC	2 cut(s)	368, 381
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	2 cut(s)	50, 283
AoxI	GGCC	3 cut(s)	14, 57, 201
ApeKI	GCWGC	3 cut(s)	135, 443, 539
ApoI	RAATTY	2 cut(s)	289, 361
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	50, 283
AvaII	GGWCC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	51, 113
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	122, 455, 526
BccI	CCATC	2 cut(s)	160, 414
BceAI	ACGGC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	6 cut(s)	17, 57, 75, 136, 444, 540
BlsI	GCNGC	6 cut(s)	18, 58, 76, 137, 445, 541
BmcAI	AGTACT	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	50, 283
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	93, 375
BpiI	GAAGAC	1 cut(s)	504
Bpu10I	CCTNAGC	2 cut(s)	20, 139
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	5 cut(s)	180, 204, 354, 384, 415
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 131, 416, 421
Bse118I	RCCGGY	1 cut(s)	272
BseDI	CCNNGG	5 cut(s)	180, 204, 354, 384, 415
BseGI	GGATG	2 cut(s)	425, 456
BseLI	CCNNNNNNNGG	4 cut(s)	76, 131, 416, 421
BseMII	CTCAG	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	122, 455, 526
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	2 cut(s)	243, 586
Bsh1285I	CGRYCG	2 cut(s)	60, 241
BshFI	GGCC	3 cut(s)	16, 59, 203
BsiEI	CGRYCG	2 cut(s)	60, 241
BsiHKAI	GWGCWC	2 cut(s)	51, 113
BsiHKCI	CYCGRG	2 cut(s)	50, 283
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	76, 131, 416, 421
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	16, 59, 203
BsoBI	CYCGRG	2 cut(s)	50, 283
Bsp1286I	GDGCHC	2 cut(s)	51, 113
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	190, 238, 373
Bsp19I	CCATGG	1 cut(s)	415
Bsp68I	TCGCGA	1 cut(s)	243
BspACI	CCGC	8 cut(s)	5, 17, 32, 56, 74, 77, 254, 586
BspANI	GGCC	3 cut(s)	16, 59, 203
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	243, 586
BspLI	GGNNCC	2 cut(s)	93, 375
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	368, 381
BsrFI	RCCGGY	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	5 cut(s)	180, 204, 354, 384, 415
BssMI	GATC	3 cut(s)	190, 238, 373
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	4 cut(s)	180, 354, 384, 415
Bst6I	CTCTTC	2 cut(s)	338, 581
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	109, 113
BstDEI	CTNAG	3 cut(s)	20, 139, 554
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	425, 456
BstFNI	CGCG	2 cut(s)	243, 586
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	3 cut(s)	193, 241, 376
BstMBI	GATC	3 cut(s)	190, 238, 373
BstMCI	CGRYCG	2 cut(s)	60, 241
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 232, 386, 443, 545
BstUI	CGCG	2 cut(s)	243, 586
BstV1I	GCAGC	3 cut(s)	122, 455, 526
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	16, 59, 203
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	425, 456
BtuMI	TCGCGA	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	109, 113
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	329, 562
CviAII	CATG	3 cut(s)	188, 319, 416
CviQI	GTAC	2 cut(s)	329, 562
DdeI	CTNAG	3 cut(s)	20, 139, 554
DpnI	GATC	3 cut(s)	192, 240, 375
DpnII	GATC	3 cut(s)	190, 238, 373
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	338, 581
EarI	CTCTTC	2 cut(s)	338, 581
EciI	GGCGGA	2 cut(s)	20, 92
Ecl136II	GAGCTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	4 cut(s)	180, 354, 384, 415
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	184
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	389
Eco88I	CYCGRG	2 cut(s)	50, 283
EcoICRI	GAGCTC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	4 cut(s)	180, 354, 384, 415
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	4 cut(s)	180, 354, 384, 415
FaeI	CATG	3 cut(s)	191, 322, 419
FaiI	YATR	6 cut(s)	189, 320, 347, 417, 456, 534
FatI	CATG	3 cut(s)	187, 318, 415
Fnu4HI	GCNGC	6 cut(s)	17, 57, 75, 136, 444, 540
FokI	GGATG	2 cut(s)	432, 463
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	6 cut(s)	17, 57, 75, 136, 444, 540
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	6 cut(s)	17, 57, 75, 136, 444, 540
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	16, 59, 203
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	191, 322, 419
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	144, 209
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	199, 208
Hpy188III	TCNNGA	3 cut(s)	217, 242, 430
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	86, 179, 223
HpyAV	CCTTC	2 cut(s)	160, 364
HpyCH4IV	ACGT	3 cut(s)	81, 174, 221
HpyCH4V	TGCA	4 cut(s)	226, 443, 526, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 232, 386, 443, 545
HpyF3I	CTNAG	3 cut(s)	20, 139, 554
HpySE526I	ACGT	3 cut(s)	81, 174, 221
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	191, 322, 419
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	190, 238, 373
LmnI	GCTCC	2 cut(s)	97, 412
LpnPI	CCDG	8 cut(s)	84, 212, 286, 380, 383, 390, 415, 432
Lsp1109I	GCAGC	3 cut(s)	122, 455, 526
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	3 cut(s)	81, 174, 221
MaeIII	GTNAC	2 cut(s)	278, 349
MalI	GATC	3 cut(s)	192, 240, 375
MboI	GATC	3 cut(s)	190, 238, 373
MboII	GAAGA	4 cut(s)	37, 325, 509, 568
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	51, 113
MluCI	AATT	3 cut(s)	289, 361, 590
MnlI	CCTC	9 cut(s)	6, 15, 28, 46, 135, 193, 214, 279, 561
MspA1I	CMGCKG	2 cut(s)	19, 74
MspI	CCGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	2 cut(s)	243, 586
MwoI	GCNNNNNNNGC	5 cut(s)	121, 232, 386, 443, 545
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	190, 238, 373
NlaIII	CATG	3 cut(s)	191, 322, 419
NlaIV	GGNNCC	2 cut(s)	93, 375
NmeAIII	GCCGAG	2 cut(s)	187, 488
NmuCI	GTSAC	2 cut(s)	278, 349
NruI	TCGCGA	1 cut(s)	243
PaeR7I	CTCGAG	2 cut(s)	50, 283
PceI	AGGCCT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	144, 209
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	18, 58, 76, 137, 445, 541
Ple19I	CGATCG	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	93, 375
PspPI	GGNCC	1 cut(s)	184
PspXI	VCTCGAGB	2 cut(s)	50, 283
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	241
RruI	TCGCGA	1 cut(s)	243
RsaI	GTAC	2 cut(s)	330, 563
RsaNI	GTAC	2 cut(s)	329, 562
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	6 cut(s)	17, 57, 75, 136, 444, 540
Sau3AI	GATC	3 cut(s)	190, 238, 373
Sau96I	GGNCC	1 cut(s)	184
ScaI	AGTACT	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	51, 113
Sfr274I	CTCGAG	2 cut(s)	50, 283
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	2 cut(s)	50, 283
SmlI	CTYRAG	2 cut(s)	50, 283
SmoI	CTYRAG	2 cut(s)	50, 283
Sse9I	AATT	3 cut(s)	289, 361, 590
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	8 cut(s)	5, 17, 32, 56, 74, 77, 254, 586
SspMI	CTAG	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	4 cut(s)	180, 354, 384, 415
TaiI	ACGT	3 cut(s)	84, 177, 224
TaqI	TCGA	8 cut(s)	51, 84, 218, 237, 249, 284, 336, 567
TasI	AATT	3 cut(s)	289, 361, 590
TatI	WGTACW	2 cut(s)	328, 561
TauI	GCSGC	3 cut(s)	19, 59, 77
TfiI	GAWTC	2 cut(s)	144, 209
TseFI	GTSAC	2 cut(s)	278, 349
TseI	GCWGC	3 cut(s)	135, 443, 539
Tsp45I	GTSAC	2 cut(s)	278, 349
TspDTI	ATGAA	2 cut(s)	497, 510
TspGWI	ACGGA	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	289, 361
XhoI	CTCGAG	2 cut(s)	50, 283
XspI	CTAG	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.