Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008801

Physical Location & Seq

Genomic Coordinates Reverse (-)

8671985 .. 8675399

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTAGGCCTCTCAGTCATGAGAATAGGAGGCAAAGGCTCATCTCTCTCATCCTCCGCCGTCGCCAACGCCCTTGCTCACGTCACCATCGACTTGTCCGCGCTCGACAAGCTCTCCTCCTCCTCCTCCGTCGCCGCTGCCAATCTCAAGCCTCACCGGCTCCTCTCTCTCCCGTCCGTCGAAGAATTCAGAGCCTCCCTCGTTGTCCTCCTCGCCAAGCTCCTCTCCCTCTCCGGCACCCTTACGGTTCTCCCTCTTCGAATCGCCGACACCCTAAATTCGAATTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

98

Amino Acids

9.9

Weight (kDa)

9.98

Isoelectric Point (pI)

25.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02760 AT3G02760
fragaria_vesca	FvH4_2g00780 FvH4_2g00780 FvH4_2g00780 FvH4_2g00780 FvH4_3g14280 FvH4_3g25240
malus_domestica	MD05G1003500.v1.1 MD10G1004600.v1.1
prunus_persica	Prupe.8G006900_v2.0.a1
pyrus_communis	pycom05g00320 pycom10g00360
rosa_chinensis	RchiOBHm_Chr6g0251201
rosa_laevigata	RLG00000015474
rosa_multiflora	Rmu_sc0004077.1_g000009
rosa_roxburghii	Rroxscaffold_7G00216930
rosa_rugosa	Rorug05G0500700.1
rosa_samantha	Rh6AG010100 Rh6BG001900 Rh6CG007000 Rh6DG007500
rosa_wichuraiana	Rw6G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	57, 99, 135
AcsI	RAATTY	3 cut(s)	185, 277, 283
AjiI	CACGTC	1 cut(s)	82
AluBI	AGCT	2 cut(s)	112, 220
AluI	AGCT	2 cut(s)	112, 220
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	185, 277, 283
AspLEI	GCGC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	76, 146
AsuII	TTCGAA	2 cut(s)	259, 281
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	135, 138
BlsI	GCNGC	2 cut(s)	136, 139
BmgBI	CACGTC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	161, 238
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
Bpu14I	TTCGAA	2 cut(s)	259, 281
BpuEI	CTTGAG	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse118I	RCCGGY	1 cut(s)	156
BseGI	GGATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	7 cut(s)	106, 109, 112, 115, 152, 200, 212
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	157, 234
BsnI	GGCC	1 cut(s)	9
Bsp119I	TTCGAA	2 cut(s)	259, 281
BspACI	CCGC	3 cut(s)	57, 99, 135
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	161, 238
BspT104I	TTCGAA	2 cut(s)	259, 281
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	261
BstBI	TTCGAA	2 cut(s)	259, 281
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 157
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	156
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	7 cut(s)	9, 39, 112, 151, 160, 194, 220
CviKI_1	RGCY	7 cut(s)	9, 39, 112, 151, 160, 194, 220
DdeI	CTNAG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	9
EcoRI	GAATTC	2 cut(s)	185, 283
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	135, 138
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	135, 138
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	135, 138
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	157, 234
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	2 cut(s)	157, 234
HphI	GGTGA	2 cut(s)	76, 146
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	3 cut(s)	65, 134, 182
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 157
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	165, 225
LpnPI	CCDG	2 cut(s)	170, 247
Lsp1109I	GCAGC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	194, 248, 279
MluCI	AATT	3 cut(s)	185, 277, 283
MseI	TTAA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	157, 234
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	109, 157
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	161, 238
NmuCI	GTSAC	1 cut(s)	82
NspV	TTCGAA	2 cut(s)	259, 281
PagI	TCATGA	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	136, 139
PspN4I	GGNNCC	2 cut(s)	161, 238
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	2 cut(s)	135, 138
SetI	ASST	3 cut(s)	84, 114, 222
SfuI	TTCGAA	2 cut(s)	259, 281
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	185, 277, 283
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	57, 99, 135
StuI	AGGCCT	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	90, 105, 180, 259, 281
TasI	AATT	3 cut(s)	185, 277, 283
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	2 cut(s)	118, 166
XapI	RAATTY	3 cut(s)	185, 277, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.