Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008801

Physical Location & Seq

Genomic Coordinates Reverse (-)

739084 .. 760638

Gene Structure 21555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGCGAAGCTGCCAGTGATAACAGTAGGAGGTAAGGGCTCGTCTCTGTCGTCCTCATCCGTCTACGCCATAGCCGAAGGCCTCGCTAAGCTTCGCATCGACTCGTCGGTGCTCAATCGGTTCGCCTCCTCCTCGTCGCCTCTCAACGCCCACAACCTCGTCTCTTTCCTCCCCTCTCTCCCAACGGTTGTAGAATCCAGAGCCTCCCTCGTCGTCCTTCTCAGCAAGCTCCTCTCTCTCGCCGGTTCCCCCAACATCCGTAGTGATCTTCCTGTTCGAATCGCCAGAACCCTCAATTCCCCAGGCTTGGAGCTCGGATCGCTCGATTTGACCGAAGAGGAGGCTCTTGCGTTGGAGGAACTCAAGTTATCCTCTGCTGTGTGTGCGATATGTGCGCTTCTGGACCACCAGTCCGCCACTTTGTCTACTTTTTCCGATGCAGTGGCGGCGATTTCTTGCGAGGCTTTGAAGGCCGACATAACGGCATTTAATTCGATGGATTCAGGGGATGGGTATGCCTCGAAGGAGGTGATTGCGGTGGCCAGTGATTTGAAGGTGTTGCTCAATGGGTCTAAGTTAGTGGGTAAGCTTAAAATTGGAGCGGTGTCGGGAATCCCCCAAATTCACGCGAAATTGAGAGAGCAAGTGAAATCTGTGCACTCCACGACTCGAACGGTGCTGAATTCTGGCGGGGAGGTAGGTAGTCCCTGGACAGTGGGGACCGCATTGTTGTCAGTGGCTTTGGCGCTTTATCACTTGGGTGACCGTAGTTTGTCCCGTGCGAAGATGATTGTGGATGAGGTGGGGAGTGAGGATTTGAGGTCAAGTTTGGTCGCATTGTTTGAGAAGAAATGCCCAAGTAGCGAAAGCTTGAGAAGTGGGTACAACTTGGTTTCCCAATTGGGTTCCGAGGCGGAAGAGAATTATGATAAGTTTGCTTGCGAAGTGAATGTGTTGATGGGAATTGTGTGGAAGATTGTGACTTGGGAGGCATTAATGGCATTTGTGGCGCTTGAGGGAGCGGAGTTGAACAAGAGTGAAGGTAGTGAAGTGAATGGAGGAGGGAATATGAAAGTGGACAAGAAGAGTGAGAAGAAGAAGAAGAAGGTAGTTTTGGGTAAAGGGACTGGTGTTGTAGTACAGTTGATTAAAGATAGGTTGCAGGGCAAGGGAGGAAATGCTGTTGATAGTTTGGGGTTGTTGGTAAATTGGGCGGACGAGTTTTTATTGTTTTTTGACCTCAAGAACCCGGAATTTGATTGTTTTTTGAGCAAAGTGAAGGAGATAGTGGAAAGCAATGAGAGTAGAAGACTCCCAAAGATTGCAAAGGGTACTCGTGACTTCTCTAAAGAACAAATGGCAGTAAGAGAGAAAGCATTCTCAATAATTGTAGGGGTCTTTCAGAGGCATGGTGCCACAGCCCTTGACACTCCAGTTTTTGAATTGAGAGAAACCCTGATGGGGAAATATGGGGAAGATTCGAAATTGATTTATGATCTTGCTGACCAGGGAGGAGAGCTTTTATCACTACGATATGATCTAACCGTTCCATTTGCTAGATATGTAGCTATGAATGGTATCACATCTTACAGAAGATACCAAATAGCAAAGGTCTACAGAAGAGACAATCCGTCCAAAGGACGATATCGTGAATTTTACCAATGCGACTTTGATATTGCTGGCCAATTTGAAAAAATGGGTCCAGATTTTGAAGTTATTAAGATTTTGACAGAACTTCTTGATGAGCTGAACATTGGAGATTATGAGATTAAATTGAATCACAGAAAGTTGCTGGATGGAATGTTTGAAATCTGTGGAGTGCCTCCTGAAAAATTCAGAACTATTTGTTCAAGTATTGACAAGTTAGACAAGCAGTCTTTTGAGCAGATAAAAAACGAAATGGTGGAAGAGAAGGGCTTAAGTGTTGAGACAGCAGACAAAATTGGTGCTTTTGTAAAAGAGCGTGGACATCCTTTGGAACTGTTAAGTAAGCTTAAACAGGAGGGCAGCAAGTTCTTAGAAAACAGTTTATCGGTAGATGCATTGAATGACCTGGCAATCTTATTCAATGCTTTGGAAAAATCAAAGTGCATAGGAAAAGTGGCTTTTGACTTAAGTCTTGCAAGGGGTCTCGATTATTATACTGGAGTAATATTTGAAGCTGTTTTTAAGGGGGGTGCCCAGGTTGGTTCAATTGCTTCTGGTGGACGCTATGACAACCTTATAGGGATGTTTGGTACAAAGCAGGTTCCAGCTGTTGGTATCAGCCTTGGAATTGAACGAGTATTTAATATAATGGAGCAGCTTAACAAAGACCAAAATCAGAACACGAGCAACGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

782

Amino Acids

85.07

Weight (kDa)

5.89

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_aromatic	PF00221	79 - 229	4.9e-07	Aromatic amino acid lyase
tRNA-synt_His	PF13393	444 - 762	1.4e-43	Histidyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02760 AT3G02760
fragaria_vesca	FvH4_2g00780 FvH4_2g00780 FvH4_2g00780 FvH4_2g00780 FvH4_3g14280 FvH4_3g25240
malus_domestica	MD05G1003500.v1.1 MD10G1004600.v1.1
prunus_persica	Prupe.8G006900_v2.0.a1
pyrus_communis	pycom05g00320 pycom10g00360
rosa_chinensis	RchiOBHm_Chr6g0251201
rosa_laevigata	RLG00000015474
rosa_multiflora	Rmu_sc0004077.1_g000009
rosa_roxburghii	Rroxscaffold_7G00216930
rosa_rugosa	Rorug05G0500700.1
rosa_samantha	Rh6AG010100 Rh6BG001900 Rh6CG007000 Rh6DG007500
rosa_wichuraiana	Rw6G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2236
AccB1I	GGYRCC	2 cut(s)	1412, 2177
AccB7I	CCANNNNNTGG	1 cut(s)	2258
AccBSI	CCGCTC	2 cut(s)	602, 1022
AccI	GTMKAC	3 cut(s)	63, 425, 1614
AccII	CGCG	1 cut(s)	629
AciI	CCGC	9 cut(s)	414, 446, 536, 602, 690, 723, 914, 1022, 1214
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	2 cut(s)	540, 1681
AcsI	RAATTY	5 cut(s)	621, 682, 1253, 1652, 1832
AfaI	GTAC	4 cut(s)	884, 1140, 1333, 2239
AfiI	CCNNNNNNNGG	4 cut(s)	307, 1461, 1637, 2258
AflII	CTTAAG	2 cut(s)	1918, 2113
AhdI	GACNNNNNGTC	3 cut(s)	409, 1630, 1873
AjnI	CCWGG	5 cut(s)	301, 707, 1506, 2052, 2181
AjuI	GAANNNNNNNTTGG	2 cut(s)	1097, 1129
AleI	CACNNNNGTG	1 cut(s)	759
Alw21I	GWGCWC	3 cut(s)	114, 315, 660
Alw26I	GTCTC	5 cut(s)	48, 166, 1617, 1922, 2135
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	4 cut(s)	79, 471, 540, 1681
ApaLI	GTGCAC	1 cut(s)	656
ApeKI	GCWGC	3 cut(s)	10, 2007, 2302
ApoI	RAATTY	5 cut(s)	621, 682, 1253, 1652, 1832
AseI	ATTAAT	1 cut(s)	995
Asp700I	GAANNNNTTC	1 cut(s)	1376
AspLEI	GCGC	3 cut(s)	397, 748, 1012
AspS9I	GGNCC	3 cut(s)	403, 720, 1700
AsuC2I	CCSGG	1 cut(s)	1250
AsuHPI	GGTGA	2 cut(s)	541, 773
AsuII	TTCGAA	2 cut(s)	277, 1481
AvaII	GGWCC	3 cut(s)	403, 720, 1700
BaeGI	GKGCMC	2 cut(s)	660, 2182
BalI	TGGCCA	2 cut(s)	542, 1683
BanI	GGYRCC	2 cut(s)	1412, 2177
BanII	GRGCYC	2 cut(s)	41, 315
BauI	CACGAG	2 cut(s)	1335, 2329
BbsI	GAAGAC	1 cut(s)	1315
Bbv12I	GWGCWC	3 cut(s)	114, 315, 660
BbvI	GCAGC	2 cut(s)	2019, 2314
BccI	CCATC	5 cut(s)	490, 503, 952, 1453, 1790
BceAI	ACGGC	1 cut(s)	498
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	5 cut(s)	303, 709, 1508, 2054, 2183
BcnI	CCSGG	1 cut(s)	1250
BcoDI	GTCTC	5 cut(s)	48, 166, 1617, 1922, 2135
BfaI	CTAG	1 cut(s)	1557
BfmI	CTRYAG	1 cut(s)	1615
BfoI	RGCGCY	2 cut(s)	749, 1013
BfrI	CTTAAG	2 cut(s)	1918, 2113
BfuAI	ACCTGC	1 cut(s)	2236
BisI	GCNGC	4 cut(s)	11, 447, 2008, 2303
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	4 cut(s)	12, 448, 2009, 2304
Bme1390I	CCNGG	6 cut(s)	303, 709, 1250, 1508, 2054, 2183
Bme18I	GGWCC	3 cut(s)	403, 720, 1700
BmeRI	GACNNNNNGTC	3 cut(s)	409, 1630, 1873
BmgT120I	GGNCC	3 cut(s)	403, 720, 1700
BmiI	GGNNCC	7 cut(s)	247, 721, 907, 1414, 1701, 2179, 2250
BmrFI	CCNGG	6 cut(s)	303, 709, 1250, 1508, 2054, 2183
BmsI	GCATC	3 cut(s)	105, 427, 2029
BoxI	GACNNNNGTC	1 cut(s)	2115
BpiI	GAAGAC	1 cut(s)	1315
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
BpmI	CTGGAG	2 cut(s)	1416, 2166
Bpu1102I	GCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	2 cut(s)	277, 1481
BpuEI	CTTGAG	4 cut(s)	347, 892, 1034, 1226
BpuMI	CCSGG	1 cut(s)	1250
BsaI	GGTCTC	1 cut(s)	2135
BsaJI	CCNNGG	6 cut(s)	301, 707, 909, 1507, 2181, 2269
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 1461, 1637, 2258
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	6 cut(s)	14, 409, 543, 1132, 1433, 2149
Bse3DI	GCAATG	1 cut(s)	1303
BseBI	CCWGG	5 cut(s)	303, 709, 1508, 2054, 2183
BseDI	CCNNGG	6 cut(s)	301, 707, 909, 1507, 2181, 2269
BseGI	GGATG	7 cut(s)	56, 255, 514, 802, 1801, 1969, 2235
BseLI	CCNNNNNNNGG	4 cut(s)	307, 1461, 1637, 2258
BseMI	GCAATG	1 cut(s)	1303
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	6 cut(s)	14, 409, 543, 1132, 1433, 2149
BseRI	GAGGAG	6 cut(s)	118, 121, 221, 353, 1074, 1527
BseSI	GKGCMC	2 cut(s)	660, 2182
BseXI	GCAGC	2 cut(s)	2019, 2314
Bsh1236I	CGCG	1 cut(s)	629
BshFI	GGCC	4 cut(s)	81, 473, 542, 1683
BshNI	GGYRCC	2 cut(s)	1412, 2177
BsiHKAI	GWGCWC	3 cut(s)	114, 315, 660
BsiSI	CCGG	2 cut(s)	243, 1250
BslFI	GGGAC	4 cut(s)	690, 733, 760, 1138
BslI	CCNNNNNNNGG	4 cut(s)	307, 1461, 1637, 2258
BsmAI	GTCTC	5 cut(s)	48, 166, 1617, 1922, 2135
BsmBI	CGTCTC	2 cut(s)	48, 166
BsmFI	GGGAC	4 cut(s)	690, 733, 760, 1138
BsmI	GAATGC	1 cut(s)	1376
BsnI	GGCC	4 cut(s)	81, 473, 542, 1683
Bso31I	GGTCTC	1 cut(s)	2135
Bsp119I	TTCGAA	2 cut(s)	277, 1481
Bsp1286I	GDGCHC	5 cut(s)	41, 114, 315, 660, 2182
Bsp143I	GATC	4 cut(s)	265, 317, 1495, 1537
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	9 cut(s)	414, 446, 536, 602, 690, 723, 914, 1022, 1214
BspANI	GGCC	4 cut(s)	81, 473, 542, 1683
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	7 cut(s)	247, 721, 907, 1414, 1701, 2179, 2250
BspMI	ACCTGC	1 cut(s)	2236
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	2 cut(s)	277, 1481
BspT107I	GGYRCC	2 cut(s)	1412, 2177
BspTI	CTTAAG	2 cut(s)	1918, 2113
BspTNI	GGTCTC	1 cut(s)	2135
BsrBI	CCGCTC	2 cut(s)	602, 1022
BsrDI	GCAATG	1 cut(s)	1303
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	6 cut(s)	14, 409, 543, 1132, 1433, 2149
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	6 cut(s)	301, 707, 909, 1507, 2181, 2269
BssMI	GATC	4 cut(s)	265, 317, 1495, 1537
BssSI	CACGAG	2 cut(s)	1335, 2329
BssT1I	CCWWGG	1 cut(s)	2269
Bst2BI	CACGAG	2 cut(s)	1335, 2329
Bst2UI	CCWGG	5 cut(s)	303, 709, 1508, 2054, 2183
Bst4CI	ACNGT	9 cut(s)	25, 187, 676, 715, 767, 1143, 1546, 1983, 2027
Bst6I	CTCTTC	5 cut(s)	330, 912, 1079, 1615, 1902
BstAFI	CTTAAG	2 cut(s)	1918, 2113
BstBI	TTCGAA	2 cut(s)	277, 1481
BstC8I	GCNNGC	3 cut(s)	227, 940, 1681
BstDEI	CTNAG	4 cut(s)	87, 221, 573, 2017
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	7 cut(s)	56, 255, 514, 802, 1801, 1969, 2235
BstFNI	CGCG	1 cut(s)	629
BstH2I	RGCGCY	2 cut(s)	749, 1013
BstHHI	GCGC	3 cut(s)	397, 748, 1012
BstKTI	GATC	4 cut(s)	268, 320, 1498, 1540
BstMAI	GTCTC	5 cut(s)	48, 166, 1617, 1922, 2135
BstMBI	GATC	4 cut(s)	265, 317, 1495, 1537
BstMWI	GCNNNNNNNGC	8 cut(s)	319, 383, 392, 446, 470, 861, 998, 1007
BstNI	CCWGG	5 cut(s)	303, 709, 1508, 2054, 2183
BstPAI	GACNNNNGTC	1 cut(s)	2115
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	6 cut(s)	301, 707, 1248, 1506, 2052, 2181
BstSFI	CTRYAG	1 cut(s)	1615
BstSLI	GKGCMC	2 cut(s)	660, 2182
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	2 cut(s)	2019, 2314
BstV2I	GAAGAC	1 cut(s)	1315
BsuRI	GGCC	4 cut(s)	81, 473, 542, 1683
BtsCI	GGATG	7 cut(s)	56, 255, 514, 802, 1801, 1969, 2235
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	5 cut(s)	21, 447, 550, 720, 741
BveI	ACCTGC	1 cut(s)	2236
Cac8I	GCNNGC	3 cut(s)	227, 940, 1681
CfoI	GCGC	3 cut(s)	397, 748, 1012
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	403, 720, 1700
CseI	GACGC	1 cut(s)	2217
Csp6I	GTAC	4 cut(s)	883, 1139, 1332, 2238
CspCI	CAANNNNNGTGG	2 cut(s)	1405, 1440
CviAII	CATG	1 cut(s)	1409
CviQI	GTAC	4 cut(s)	883, 1139, 1332, 2238
DdeI	CTNAG	4 cut(s)	87, 221, 573, 2017
DpnI	GATC	4 cut(s)	267, 319, 1497, 1539
DpnII	GATC	4 cut(s)	265, 317, 1495, 1537
DriI	GACNNNNNGTC	3 cut(s)	409, 1630, 1873
EaeI	YGGCCR	2 cut(s)	540, 1681
Eam1104I	CTCTTC	5 cut(s)	330, 912, 1079, 1615, 1902
Eam1105I	GACNNNNNGTC	3 cut(s)	409, 1630, 1873
EarI	CTCTTC	5 cut(s)	330, 912, 1079, 1615, 1902
EciI	GGCGGA	3 cut(s)	403, 929, 1229
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	2269
Eco147I	AGGCCT	1 cut(s)	81
Eco24I	GRGCYC	2 cut(s)	41, 315
Eco31I	GGTCTC	1 cut(s)	2135
Eco32I	GATATC	1 cut(s)	1646
Eco47I	GGWCC	3 cut(s)	403, 720, 1700
Eco53kI	GAGCTC	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	682
EcoRII	CCWGG	5 cut(s)	301, 707, 1506, 2052, 2181
EcoRV	GATATC	1 cut(s)	1646
EcoT14I	CCWWGG	1 cut(s)	2269
EcoT22I	ATGCAT	1 cut(s)	2044
EcoT38I	GRGCYC	2 cut(s)	41, 315
ErhI	CCWWGG	1 cut(s)	2269
Esp3I	CGTCTC	2 cut(s)	48, 166
FaeI	CATG	1 cut(s)	1412
FaqI	GGGAC	4 cut(s)	690, 733, 760, 1138
FatI	CATG	1 cut(s)	1408
FauI	CCCGC	1 cut(s)	683
FblI	GTMKAC	3 cut(s)	63, 425, 1614
Fnu4HI	GCNGC	4 cut(s)	11, 447, 2008, 2303
FokI	GGATG	7 cut(s)	43, 242, 521, 809, 1808, 1956, 2242
FriOI	GRGCYC	2 cut(s)	41, 315
Fsp4HI	GCNGC	4 cut(s)	11, 447, 2008, 2303
FspBI	CTAG	1 cut(s)	1557
GlaI	GCGC	3 cut(s)	396, 747, 1011
GluI	GCNGC	4 cut(s)	11, 447, 2008, 2303
GsuI	CTGGAG	2 cut(s)	1416, 2166
HaeII	RGCGCY	2 cut(s)	749, 1013
HaeIII	GGCC	4 cut(s)	81, 473, 542, 1683
HapII	CCGG	2 cut(s)	243, 1250
HgaI	GACGC	1 cut(s)	2217
HhaI	GCGC	3 cut(s)	397, 748, 1012
Hin1II	CATG	1 cut(s)	1412
Hin6I	GCGC	3 cut(s)	395, 746, 1010
HinP1I	GCGC	3 cut(s)	395, 746, 1010
HindIII	AAGCTT	4 cut(s)	89, 587, 868, 1991
HinfI	GANTC	9 cut(s)	101, 194, 279, 500, 612, 667, 1311, 1478, 1777
HpaII	CCGG	2 cut(s)	243, 1250
HphI	GGTGA	2 cut(s)	541, 773
Hpy166II	GTNNAC	7 cut(s)	64, 426, 658, 1078, 1615, 1967, 2207
Hpy188I	TCNGA	6 cut(s)	317, 436, 910, 1404, 1838, 2325
Hpy8I	GTNNAC	7 cut(s)	64, 426, 658, 1078, 1615, 1967, 2207
Hpy99I	CGWCG	3 cut(s)	109, 139, 215
HpyAV	CCTTC	9 cut(s)	71, 227, 463, 517, 547, 1034, 1099, 1273, 1906
HpyCH4III	ACNGT	9 cut(s)	25, 187, 676, 715, 767, 1143, 1546, 1983, 2027
HpyCH4V	TGCA	7 cut(s)	440, 658, 1162, 1325, 2042, 2091, 2123
HpyF10VI	GCNNNNNNNGC	8 cut(s)	319, 383, 392, 446, 470, 861, 998, 1007
HpyF3I	CTNAG	4 cut(s)	87, 221, 573, 2017
Hsp92II	CATG	1 cut(s)	1412
HspAI	GCGC	3 cut(s)	395, 746, 1010
Kzo9I	GATC	4 cut(s)	265, 317, 1495, 1537
LmnI	GCTCC	5 cut(s)	234, 310, 599, 1019, 2299
Lsp1109I	GCAGC	2 cut(s)	2019, 2314
LweI	GCATC	3 cut(s)	105, 427, 2029
MaeI	CTAG	1 cut(s)	1557
MaeIII	GTNAC	3 cut(s)	761, 979, 1337
MalI	GATC	4 cut(s)	267, 319, 1497, 1539
MbiI	CCGCTC	2 cut(s)	602, 1022
MboI	GATC	4 cut(s)	265, 317, 1495, 1537
MfeI	CAATTG	2 cut(s)	899, 2193
MhlI	GDGCHC	5 cut(s)	41, 114, 315, 660, 2182
MlsI	TGGCCA	2 cut(s)	542, 1683
MluNI	TGGCCA	2 cut(s)	542, 1683
MlyI	GAGTC	3 cut(s)	95, 661, 1305
MmeI	TCCRAC	1 cut(s)	333
Mox20I	TGGCCA	2 cut(s)	542, 1683
Mph1103I	ATGCAT	1 cut(s)	2044
MroXI	GAANNNNTTC	1 cut(s)	1376
MscI	TGGCCA	2 cut(s)	542, 1683
MslI	CAYNNNNRTG	1 cut(s)	759
Msp20I	TGGCCA	2 cut(s)	542, 1683
MspA1I	CMGCKG	1 cut(s)	2255
MspCI	CTTAAG	2 cut(s)	1918, 2113
MspI	CCGG	2 cut(s)	243, 1250
MspR9I	CCNGG	6 cut(s)	303, 709, 1250, 1508, 2054, 2183
MunI	CAATTG	2 cut(s)	899, 2193
Mva1269I	GAATGC	1 cut(s)	1376
MvaI	CCWGG	5 cut(s)	303, 709, 1508, 2054, 2183
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	8 cut(s)	319, 383, 392, 446, 470, 861, 998, 1007
NciI	CCSGG	1 cut(s)	1250
NdeII	GATC	4 cut(s)	265, 317, 1495, 1537
NlaIII	CATG	1 cut(s)	1412
NlaIV	GGNNCC	7 cut(s)	247, 721, 907, 1414, 1701, 2179, 2250
NmuCI	GTSAC	3 cut(s)	761, 979, 1337
NsiI	ATGCAT	1 cut(s)	2044
NspV	TTCGAA	2 cut(s)	277, 1481
OliI	CACNNNNGTG	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 72, 321, 330
PctI	GAATGC	1 cut(s)	1376
PdmI	GAANNNNTTC	1 cut(s)	1376
PfeI	GAWTC	6 cut(s)	194, 279, 500, 612, 1478, 1777
PflMI	CCANNNNNTGG	1 cut(s)	2258
PkrI	GCNGC	4 cut(s)	12, 448, 2009, 2304
PleI	GAGTC	3 cut(s)	95, 661, 1305
PpsI	GAGTC	3 cut(s)	95, 661, 1305
PshAI	GACNNNNGTC	1 cut(s)	2115
PshBI	ATTAAT	1 cut(s)	995
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	5 cut(s)	301, 707, 1506, 2052, 2181
PspEI	GGTNACC	1 cut(s)	761
PspGI	CCWGG	5 cut(s)	301, 707, 1506, 2052, 2181
PspN4I	GGNNCC	7 cut(s)	247, 721, 907, 1414, 1701, 2179, 2250
PspPI	GGNCC	3 cut(s)	403, 720, 1700
PvuII	CAGCTG	1 cut(s)	2255
RsaI	GTAC	4 cut(s)	884, 1140, 1333, 2239
RsaNI	GTAC	4 cut(s)	883, 1139, 1332, 2238
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	4 cut(s)	11, 447, 2008, 2303
Sau3AI	GATC	4 cut(s)	265, 317, 1495, 1537
Sau96I	GGNCC	3 cut(s)	403, 720, 1700
SchI	GAGTC	3 cut(s)	95, 661, 1305
ScrFI	CCNGG	6 cut(s)	303, 709, 1250, 1508, 2054, 2183
SduI	GDGCHC	5 cut(s)	41, 114, 315, 660, 2182
SfaNI	GCATC	3 cut(s)	105, 427, 2029
SfcI	CTRYAG	1 cut(s)	1615
SfuI	TTCGAA	2 cut(s)	277, 1481
SinI	GGWCC	3 cut(s)	403, 720, 1700
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	6 cut(s)	362, 871, 1013, 1241, 1918, 2113
SmoI	CTYRAG	6 cut(s)	362, 871, 1013, 1241, 1918, 2113
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	9 cut(s)	414, 446, 536, 602, 690, 723, 914, 1022, 1214
SspI	AATATT	1 cut(s)	2154
SspMI	CTAG	1 cut(s)	1557
SstI	GAGCTC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	6 cut(s)	301, 707, 1248, 1506, 2052, 2181
StyI	CCWWGG	1 cut(s)	2269
TaaI	ACNGT	9 cut(s)	25, 187, 676, 715, 767, 1143, 1546, 1983, 2027
TaqI	TCGA	8 cut(s)	99, 277, 324, 494, 521, 670, 1481, 2133
TaqII	GACCGA	1 cut(s)	347
TatI	WGTACW	1 cut(s)	1138
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	6 cut(s)	194, 279, 500, 612, 1478, 1777
TscAI	CASTG	5 cut(s)	21, 447, 550, 720, 741
TseFI	GTSAC	3 cut(s)	761, 979, 1337
TseI	GCWGC	3 cut(s)	10, 2007, 2302
Tsp45I	GTSAC	3 cut(s)	761, 979, 1337
TspDTI	ATGAA	2 cut(s)	1085, 1586
TspGWI	ACGGA	3 cut(s)	49, 248, 1620
TspRI	CASTG	5 cut(s)	21, 447, 550, 720, 741
Van91I	CCANNNNNTGG	1 cut(s)	2258
Vha464I	CTTAAG	2 cut(s)	1918, 2113
VneI	GTGCAC	1 cut(s)	656
VpaK11BI	GGWCC	3 cut(s)	403, 720, 1700
VspI	ATTAAT	1 cut(s)	995
XapI	RAATTY	5 cut(s)	621, 682, 1253, 1652, 1832
XmiI	GTMKAC	3 cut(s)	63, 425, 1614
XmnI	GAANNNNTTC	1 cut(s)	1376
XspI	CTAG	1 cut(s)	1557
Zsp2I	ATGCAT	1 cut(s)	2044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.