Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008801

Physical Location & Seq

Genomic Coordinates Reverse (-)

18186899 .. 18187381

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGGGCCTCCCAGTCATGAGAATAGGAGGCAAAGGCTCATCTCTCTCATCCTCCGCCGTCGCCAACGCCCTCACTCATGTCACCATCAACTCGCCCGCCCTCAACAAGCTCTCCTCCTCCTCCGCTGCCGCCGCCGCCAATCTCAAGCCTCACCGGCTCCTCTCTATCCCGTCCACTCTTGATTTGACCGACGAGGAGGCTCTTGCATTGCAAAAGCTCAAGGACTTGCCTTCTTTGTACGACGTCTGTGCACTTCTTGACCACCAATCGGGGCGCTTTCTTTCGTCCTCGGCGACGCTGGAGATCCGCTCCCCGCCAACACCAGTGAATGAATCTCGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

117

Amino Acids

12.09

Weight (kDa)

7.95

Isoelectric Point (pI)

63.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02760 AT3G02760
fragaria_vesca	FvH4_2g00780 FvH4_2g00780 FvH4_2g00780 FvH4_2g00780 FvH4_3g14280 FvH4_3g25240
malus_domestica	MD05G1003500.v1.1 MD10G1004600.v1.1
prunus_persica	Prupe.8G006900_v2.0.a1
pyrus_communis	pycom05g00320 pycom10g00360
rosa_chinensis	RchiOBHm_Chr6g0251201
rosa_laevigata	RLG00000015474
rosa_multiflora	Rmu_sc0004077.1_g000009
rosa_roxburghii	Rroxscaffold_7G00216930
rosa_rugosa	Rorug05G0500700.1
rosa_samantha	Rh6AG010100 Rh6BG001900 Rh6CG007000 Rh6DG007500
rosa_wichuraiana	Rw6G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	312
AciI	CCGC	8 cut(s)	57, 99, 126, 132, 135, 138, 310, 317
AclWI	GGATC	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	112, 220
AluI	AGCT	2 cut(s)	112, 220
Alw21I	GWGCWC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	7
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	76, 146
BaeGI	GKGCMC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BfoI	RGCGCY	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	129, 132, 135, 138
BlsI	GCNGC	4 cut(s)	130, 133, 136, 139
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	131, 206
Bsa29I	ATCGAT	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	14, 326
Bse3DI	GCAATG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	14, 326
BseRI	GAGGAG	5 cut(s)	106, 109, 112, 152, 212
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	271
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	306, 341, 345
BspACI	CCGC	8 cut(s)	57, 99, 126, 132, 135, 138, 310, 317
BspANI	GGCC	1 cut(s)	9
BspDI	ATCGAT	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	14, 326
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	306, 341, 345
BssNI	GRCGYC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	3 cut(s)	309, 344, 348
BstMBI	GATC	3 cut(s)	306, 341, 345
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 137, 157
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	344
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	19, 80
CviJI	RGCY	7 cut(s)	9, 39, 112, 151, 160, 203, 220
CviKI_1	RGCY	7 cut(s)	9, 39, 112, 151, 160, 203, 220
CviQI	GTAC	1 cut(s)	241
DpnI	GATC	3 cut(s)	308, 343, 347
DpnII	GATC	3 cut(s)	306, 341, 345
EciI	GGCGGA	1 cut(s)	46
FaeI	CATG	2 cut(s)	22, 83
FaiI	YATR	2 cut(s)	20, 81
FatI	CATG	2 cut(s)	18, 79
FauI	CCCGC	2 cut(s)	106, 324
Fnu4HI	GCNGC	4 cut(s)	129, 132, 135, 138
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	129, 132, 135, 138
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	4 cut(s)	129, 132, 135, 138
GsuI	CTGGAG	1 cut(s)	323
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	22, 83
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	76, 146
Hpy166II	GTNNAC	2 cut(s)	177, 254
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	4 cut(s)	19, 182, 260, 339
Hpy8I	GTNNAC	2 cut(s)	177, 254
Hpy99I	CGWCG	4 cut(s)	65, 197, 248, 301
HpyAV	CCTTC	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	209, 214, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 137, 157
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	22, 83
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	306, 341, 345
LmnI	GCTCC	2 cut(s)	165, 317
LpnPI	CCDG	4 cut(s)	27, 170, 287, 339
Lsp1109I	GCAGC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	308, 343, 347
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	3 cut(s)	306, 341, 345
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	256
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	3 cut(s)	134, 137, 157
NdeII	GATC	3 cut(s)	306, 341, 345
NlaIII	CATG	2 cut(s)	22, 83
NlaIV	GGNNCC	1 cut(s)	161
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	130, 133, 136, 139
Ple19I	CGATCG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	306
PvuI	CGATCG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	4 cut(s)	129, 132, 135, 138
Sau3AI	GATC	3 cut(s)	306, 341, 345
Sau96I	GGNCC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	3 cut(s)	114, 222, 249
SmlI	CTYRAG	2 cut(s)	146, 221
SmoI	CTYRAG	2 cut(s)	146, 221
SsiI	CCGC	8 cut(s)	57, 99, 126, 132, 135, 138, 310, 317
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	340, 344
TaqII	GACCGA	1 cut(s)	206
TauI	GCSGC	3 cut(s)	134, 137, 140
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	333
VneI	GTGCAC	1 cut(s)	252
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.