FvH4_3g17630

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
11218976 .. 11223086
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17630.t5

Sequence Viewer

Length: 708 bp
ATGGTTCTTTCTGGTCAGTATTCCGCATTTCTTATTGCCAAAGTTGCAGCTGGGATTGCCGGCAATTTCTTTGCTTTTGGGCTGTTTGTTTCGCCTATGCACACATTCAAAAGAATCATCAGAAATGGTTCAACTGAAGAGTTCTCAGGGCTGCCATACATATATGCCCTTTTGAATTGCATGATCAGCATGTGGTATGGATCACCTCTTATATCTTCTGATAACATATTGATTCTAACAGTCAATTCAGTCGGTGCAGTGTTTCAACTTGCCTACATAACCCTCTTCATAATCTATGCTGAGAAACCAAAAAAGGTGTGGATGATGGGATTGTTAGTAGCAGTTTTTGGTTTATTTGCAATCATAGCCATTGGGAGCTTGCAGATATCTGACCTTTTTCTACGACGGACAATTGTTGGATTGCTTAGCTGCTTTTCTCTTATATCAATGTTCGCTTCTCCATTGTTCATAATAAACTTGGTGATCCGTACAAAGAGTGTTGAGTTCATGCCCTTTTATCTCTCCCTTTCCACCTTCCTAATGAGCACCTCTTTCCTTCTGTATGGAATTTTTAATTTCGATCCCTACGTTTATGTCCCTAATGGGATAGGAACAATCTTGGGGATTGTGCAATTGGCGTTGTACTTTCACTATCATCGTTCATCGAAAGAAGACTCCAGAGAACCCTTGATAGTTTCGTATGCATAA

Protein Analysis

236

Amino Acids

26.25

Weight (kDa)

9.04

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 2 - 71 9.3e-14 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 106 - 189 2.3e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 3 cut(s) 208, 478, 575
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 490, 644
AgsI TTSAA 4 cut(s) 109, 132, 175, 266
AluBI AGCT 3 cut(s) 50, 378, 429
AluI AGCT 3 cut(s) 50, 378, 429
Alw21I GWGCWC 1 cut(s) 548
AlwI GGATC 3 cut(s) 208, 478, 575
ApeKI GCWGC 3 cut(s) 47, 151, 429
ApoI RAATTY 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 195, 493
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 548
BbvI GCAGC 3 cut(s) 59, 138, 416
BccI CCATC 1 cut(s) 319
BclI TGATCA 1 cut(s) 183
BisI GCNGC 3 cut(s) 48, 152, 430
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 3 cut(s) 49, 153, 431
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 661
Bpu1102I GCTNAGC 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 59
BseGI GGATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 159, 291
BseXI GCAGC 3 cut(s) 59, 138, 416
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 548
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 4 cut(s) 183, 200, 483, 580
Bsp1720I GCTNAGC 1 cut(s) 425
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 158, 292
BspPI GGATC 3 cut(s) 208, 478, 575
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 4 cut(s) 183, 200, 483, 580
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 132, 290
BstC8I GCNNGC 2 cut(s) 61, 380
BstDEI CTNAG 3 cut(s) 145, 300, 425
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 4 cut(s) 186, 203, 486, 583
BstMBI GATC 4 cut(s) 183, 200, 483, 580
BstMWI GCNNNNNNNGC 4 cut(s) 44, 56, 186, 365
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 3 cut(s) 59, 138, 416
BstV2I GAAGAC 1 cut(s) 678
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 61, 380
Cfr10I RCCGGY 1 cut(s) 59
Csp6I GTAC 2 cut(s) 489, 643
CviAII CATG 3 cut(s) 181, 190, 508
CviJI RGCY 6 cut(s) 50, 82, 151, 368, 378, 429
CviKI_1 RGCY 6 cut(s) 50, 82, 151, 368, 378, 429
CviQI GTAC 2 cut(s) 489, 643
DdeI CTNAG 3 cut(s) 145, 300, 425
DpnI GATC 4 cut(s) 185, 202, 485, 582
DpnII GATC 4 cut(s) 183, 200, 483, 580
Eam1104I CTCTTC 2 cut(s) 132, 290
EarI CTCTTC 2 cut(s) 132, 290
Eco32I GATATC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 706
FaeI CATG 3 cut(s) 184, 193, 511
FaqI GGGAC 1 cut(s) 581
FatI CATG 3 cut(s) 180, 189, 507
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 48, 152, 430
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 48, 152, 430
GluI GCNGC 3 cut(s) 48, 152, 430
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 661
HapII CCGG 1 cut(s) 60
Hin1II CATG 3 cut(s) 184, 193, 511
HinfI GANTC 3 cut(s) 114, 232, 674
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 195, 493
Hpy188I TCNGA 3 cut(s) 122, 220, 391
Hpy188III TCNNGA 1 cut(s) 678
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 2 cut(s) 544, 566
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 8 cut(s) 47, 100, 180, 257, 359, 382, 631, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 56, 186, 365
HpyF3I CTNAG 3 cut(s) 145, 300, 425
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 3 cut(s) 184, 193, 511
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 4 cut(s) 183, 200, 483, 580
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 4 cut(s) 36, 73, 132, 691
Lsp1109I GCAGC 3 cut(s) 59, 138, 416
MaeII ACGT 1 cut(s) 588
MalI GATC 4 cut(s) 185, 202, 485, 582
MboI GATC 4 cut(s) 183, 200, 483, 580
MboII GAAGA 4 cut(s) 149, 207, 277, 683
MfeI CAATTG 2 cut(s) 411, 632
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 7 cut(s) 64, 175, 244, 411, 567, 574, 632
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 3 cut(s) 216, 293, 559
Mph1103I ATGCAT 1 cut(s) 706
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 60
MunI CAATTG 2 cut(s) 411, 632
MwoI GCNNNNNNNGC 4 cut(s) 44, 56, 186, 365
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 4 cut(s) 183, 200, 483, 580
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 184, 193, 511
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 114, 232
PkrI GCNGC 3 cut(s) 49, 153, 431
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 490, 644
RsaNI GTAC 2 cut(s) 489, 643
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 3 cut(s) 48, 152, 430
Sau3AI GATC 4 cut(s) 183, 200, 483, 580
SchI GAGTC 1 cut(s) 668
SduI GDGCHC 1 cut(s) 548
SetI ASST 9 cut(s) 52, 208, 318, 380, 396, 431, 536, 551, 591
Sse9I AATT 7 cut(s) 64, 175, 244, 411, 567, 574, 632
SsiI CCGC 1 cut(s) 24
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 579, 665
TasI AATT 7 cut(s) 64, 175, 244, 411, 567, 574, 632
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 2 cut(s) 114, 232
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 264
TseI GCWGC 3 cut(s) 47, 151, 429
TspDTI ATGAA 4 cut(s) 277, 457, 496, 651
TspGWI ACGGA 2 cut(s) 421, 476
TspRI CASTG 1 cut(s) 264
XapI RAATTY 1 cut(s) 567
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.