Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Forward (+)

26933025 .. 26935644

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTTTTTTCAGCTTCAAATTCCGTGCTCATAATCTGCAAAGATGCAGCTGGAGTTGCAGGGAACATCTTTGCTTTTGGGCTGTTTGTTTCACCAGCACACACATTTAGAAGAATAATAAGAAACCATGCCACTGAAGAGTTCTCAGGGCTCCCATACATATATGCCCTTTTGAACTGCTTGATCTACACTTGGTATGGATCGCCTGTTGTATCTTCTGATAACATATTGGTTATGACAGTCAATTCAGTTGGTGCGGTGTTTCAATTAGTGTACATAACCCTCTTCATAATATATGCTGAGAATACAAAAAAGGTGAGGATGCTGGGCTTGCTGGCAGCAGTTTGTGGTCTAATTGCAATCATAGTCCTTGGGAGCTTGCAAATTACTGATGCTGCTACGCGCCGGCTAGTTGTTGGACTGCTTAGTTGTGCTTCTTTAATATCAATGTTTGCGTCTCCTTTGTTTATAATTAACTTGGTGATCCAGACACAGAGTGTTGAATTTATGCCATTCTATCTCTCCCTTTCCACCTTCCTAATGAGCACCTCTTTCTTGCTTTATGGAATTTTTAATTTTGATCCCTTCGTTTATGTCCCAAATGGAGTAGGAACCATTTTGGGGATTGTACAATTAGCGTTGTACTTTTATTATAAGGATTCGTCTAAAGAAGACTCCAGAGAACCGTTGTTAGTTTCATATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

25.91

Weight (kDa)

6.1

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	470, 654
AccII	CGCG	1 cut(s)	403
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	208, 478, 575
AcsI	RAATTY	3 cut(s)	19, 503, 567
AcuI	CTGAAG	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	3 cut(s)	275, 630, 644
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	4 cut(s)	18, 175, 266, 503
AluBI	AGCT	3 cut(s)	14, 50, 378
AluI	AGCT	3 cut(s)	14, 50, 378
Alw21I	GWGCWC	2 cut(s)	30, 548
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	3 cut(s)	208, 478, 575
ApeKI	GCWGC	3 cut(s)	47, 338, 395
ApoI	RAATTY	3 cut(s)	19, 503, 567
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	84, 328, 493
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	30, 548
BbvI	GCAGC	3 cut(s)	59, 350, 382
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	3 cut(s)	48, 339, 396
BlsI	GCNGC	3 cut(s)	49, 340, 397
BmiI	GGNNCC	2 cut(s)	152, 613
BmsI	GCATC	3 cut(s)	34, 312, 382
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	2 cut(s)	72, 661
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	159, 291
BseXI	GCAGC	3 cut(s)	59, 350, 382
BseYI	CCCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	30, 548
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	1 cut(s)	462
BsmBI	CGTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	30, 153, 548
Bsp1407I	TGTACA	2 cut(s)	273, 628
Bsp143I	GATC	4 cut(s)	183, 200, 483, 580
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	158, 292
BspFNI	CGCG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	152, 613
BspPI	GGATC	3 cut(s)	208, 478, 575
BsrFI	RCCGGY	1 cut(s)	405
BsrGI	TGTACA	2 cut(s)	273, 628
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	4 cut(s)	183, 200, 483, 580
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	241, 687
Bst6I	CTCTTC	2 cut(s)	132, 290
BstAUI	TGTACA	2 cut(s)	273, 628
BstC8I	GCNNGC	4 cut(s)	332, 336, 380, 407
BstDEI	CTNAG	3 cut(s)	145, 300, 425
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	4 cut(s)	186, 203, 486, 583
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	4 cut(s)	183, 200, 483, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 331
BstUI	CGCG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	59, 350, 382
BstV2I	GAAGAC	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	4 cut(s)	332, 336, 380, 407
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	405
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	274, 629, 643
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	7 cut(s)	14, 50, 82, 151, 330, 378, 409
CviKI_1	RGCY	7 cut(s)	14, 50, 82, 151, 330, 378, 409
CviQI	GTAC	3 cut(s)	274, 629, 643
DdeI	CTNAG	3 cut(s)	145, 300, 425
DpnI	GATC	4 cut(s)	185, 202, 485, 582
DpnII	GATC	4 cut(s)	183, 200, 483, 580
DraIII	CACNNNGTG	1 cut(s)	497
Eam1104I	CTCTTC	2 cut(s)	132, 290
EarI	CTCTTC	2 cut(s)	132, 290
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	48, 339, 396
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	48, 339, 396
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	3 cut(s)	48, 339, 396
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	72, 661
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	659, 674
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	3 cut(s)	84, 328, 493
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	487, 678
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	544, 595
HpyCH4III	ACNGT	2 cut(s)	241, 687
HpyCH4V	TGCA	5 cut(s)	39, 47, 59, 359, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 331
HpyF3I	CTNAG	3 cut(s)	145, 300, 425
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	403
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	183, 200, 483, 580
LmnI	GCTCC	2 cut(s)	156, 375
Lsp1109I	GCAGC	3 cut(s)	59, 350, 382
LweI	GCATC	3 cut(s)	34, 312, 382
MaeI	CTAG	1 cut(s)	410
MalI	GATC	4 cut(s)	185, 202, 485, 582
MboI	GATC	4 cut(s)	183, 200, 483, 580
MboII	GAAGA	5 cut(s)	123, 149, 207, 277, 683
MhlI	GDGCHC	3 cut(s)	30, 153, 548
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	3 cut(s)	293, 312, 559
MroNI	GCCGGC	1 cut(s)	405
MseI	TTAA	3 cut(s)	440, 474, 573
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	56, 331
NaeI	GCCGGC	1 cut(s)	407
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	4 cut(s)	183, 200, 483, 580
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	152, 613
PdiI	GCCGGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	49, 340, 397
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
PsiI	TTATAA	2 cut(s)	470, 654
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	152, 613
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	275, 630, 644
RsaNI	GTAC	3 cut(s)	274, 629, 643
SaqAI	TTAA	3 cut(s)	440, 474, 573
SatI	GCNGC	3 cut(s)	48, 339, 396
Sau3AI	GATC	4 cut(s)	183, 200, 483, 580
SchI	GAGTC	1 cut(s)	668
SduI	GDGCHC	3 cut(s)	30, 153, 548
SetI	ASST	6 cut(s)	16, 52, 318, 380, 536, 551
SfaNI	GCATC	3 cut(s)	34, 312, 382
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	241, 687
TatI	WGTACW	3 cut(s)	273, 628, 642
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	3 cut(s)	440, 474, 573
Tru9I	TTAA	3 cut(s)	440, 474, 573
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	47, 338, 395
TspDTI	ATGAA	2 cut(s)	277, 687
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	3 cut(s)	19, 503, 567
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.