Rh5BG204000

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006610
Physical Location & Seq
Reverse (-)
23130223 .. 23131956
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG204000.1

Sequence Viewer

Length: 483 bp
ATGGTTCTTTCTTCTCAATATTCCGCATTTCTAATTGCCAAAGATGTAGCTGGGGTTGCCGGCAATATCTTTGCTTTTGGGCTGTTTGTTTCACCCATGCCCACATTTAAAAGAATCATCAGAAATGGTTCAACTGAAGAGTTCTCAGGGCTGCCATATATTTATGCCCTTTTGAACTGCATGATCAGCATGTGGTATGGATCGCCTCTTATATCTACTGATAACATGTTGATTCTTACAGTCAATTCAGCTGGTGCAGTGTTTCAATTTGTCTACATAACCCTCTTCATAATCTATGCTGAGAAACCAAAAAAGGTGAGGATGCTGGGATTGCTGGTAGCAGTTTTTGGTCTATTTGCAATCATAGTCGCTGGGAGCTTGCAGATATCTGACCTTTTTCTCCGACGGACAATCGTTGGATTGCTTAGCTGTTTTTCTCTTATATCTATGTTTGCTTCTCCATTGTTTATAATAGTAAGTTGA

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

9.26

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 18 - 103 6e-20 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AccI GTMKAC 1 cut(s) 273
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 132, 175, 266
AluBI AGCT 4 cut(s) 50, 251, 378, 429
AluI AGCT 4 cut(s) 50, 251, 378, 429
AlwI GGATC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 84, 328
BbvI GCAGC 1 cut(s) 138
BclI TGATCA 1 cut(s) 183
BisI GCNGC 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 153
BmsI GCATC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 59
BseGI GGATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 159, 291
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 3 cut(s) 50, 325, 371
BsgI GTGCAG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 60
Bsp143I GATC 2 cut(s) 183, 200
Bsp1720I GCTNAGC 1 cut(s) 425
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 158, 292
BspPI GGATC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 2 cut(s) 183, 200
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 132, 290
BstC8I GCNNGC 2 cut(s) 61, 380
BstDEI CTNAG 3 cut(s) 145, 300, 425
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 2 cut(s) 186, 203
BstMBI GATC 2 cut(s) 183, 200
BstMWI GCNNNNNNNGC 3 cut(s) 56, 186, 331
BstNSI RCATGY 2 cut(s) 193, 229
BstV1I GCAGC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 61, 380
Cfr10I RCCGGY 1 cut(s) 59
CviAII CATG 4 cut(s) 97, 181, 190, 226
CviJI RGCY 6 cut(s) 50, 82, 151, 251, 378, 429
CviKI_1 RGCY 6 cut(s) 50, 82, 151, 251, 378, 429
DdeI CTNAG 3 cut(s) 145, 300, 425
DpnI GATC 2 cut(s) 185, 202
DpnII GATC 2 cut(s) 183, 200
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 132, 290
EarI CTCTTC 2 cut(s) 132, 290
Eco32I GATATC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 387
FaeI CATG 4 cut(s) 100, 184, 193, 229
FatI CATG 4 cut(s) 96, 180, 189, 225
FbaI TGATCA 1 cut(s) 183
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 152
GsaI CCCAGC 3 cut(s) 54, 329, 375
HapII CCGG 1 cut(s) 60
Hin1II CATG 4 cut(s) 100, 184, 193, 229
HinfI GANTC 2 cut(s) 114, 232
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 84, 328
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 122, 391, 404
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 408
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 180, 257, 359, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 186, 331
HpyF3I CTNAG 3 cut(s) 145, 300, 425
Hsp92II CATG 4 cut(s) 100, 184, 193, 229
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 183, 200
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 7 cut(s) 36, 73, 132, 237, 311, 320, 357
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 312
MalI GATC 2 cut(s) 185, 202
MboI GATC 2 cut(s) 183, 200
MboII GAAGA 3 cut(s) 3, 149, 277
MluCI AATT 3 cut(s) 33, 244, 266
MmeI TCCRAC 2 cut(s) 397, 427
MnlI CCTC 3 cut(s) 216, 293, 312
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 56, 186, 331
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 2 cut(s) 183, 200
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 4 cut(s) 100, 184, 193, 229
NspI RCATGY 2 cut(s) 193, 229
PciI ACATGT 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 114, 232
PkrI GCNGC 1 cut(s) 153
PscI ACATGT 1 cut(s) 225
PsiI TTATAA 1 cut(s) 470
PspFI CCCAGC 3 cut(s) 50, 325, 371
PvuII CAGCTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 183, 200
SetI ASST 6 cut(s) 52, 253, 318, 380, 396, 431
SfaNI GCATC 1 cut(s) 312
Sse9I AATT 3 cut(s) 33, 244, 266
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 20
TaaI ACNGT 1 cut(s) 241
TasI AATT 3 cut(s) 33, 244, 266
TfiI GAWTC 2 cut(s) 114, 232
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 264
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 1 cut(s) 264
XceI RCATGY 2 cut(s) 193, 229
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.