Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Forward (+)

38631805 .. 38635563

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1270800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTTTTTACAGCTTCAAATTCCGTGCTCATAATCTGCAAAGATGCAGCTGGAATTGCAGGGAACATCTTTGCTTTTGGGCTGTTTGTTTCACCAGCACACACATTTAGAAGAATAATAAGAAACCATGCCACTGAAGAGTTCTCAGGGCTCCCATACATATATGCCCTTTTGAACTGCTTGATCTGCACGTGGTATGGATCACCTATTGTATCTTCTGATAACATATTGGTTATGACGGTCAATTCAGTTGGTGCGGTGTTTCAATTAGTGTACATAACCCTCTTCATAATATATGCTGAGAAATCAAAAAAGGTGAGGATGCTGGGATTGCTGGCAGCAGTTTGTGGTCTAATTGCAATCATGGTCTTTGGGAGCTTGCAAATTACTGATGCTGCTACGCGCCGGCTAGTTGTTGGACTGCTTAGTTGTGCTTCTTTAATATCAATGTTTGCGTCTCCTTTGTTTATAATTAACTTGGTGATCCAGACACGGAGTGTTGAATTTATGCCATTCTATCTCTCCCTTTCCACCTTCCTAATGAGCACCTCTTTCTTGCTTTATGGAATTTTTAATTTTGATCCCTTCGTTTATGTCCCAAATGGAGTAGGAACTATTTTGGGGATTGTACAATTAGCGTTGTACTTTTATTATAAGGATTCATCTAAAGAGGACTCCAGAGAACCGTTGTTAGTTTCATATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

25.97

Weight (kDa)

7.59

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	4.3e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 221	2.8e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	470, 654
AccII	CGCG	1 cut(s)	403
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	208, 478, 575
AcsI	RAATTY	3 cut(s)	19, 503, 567
AcuI	CTGAAG	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	3 cut(s)	275, 630, 644
AgsI	TTSAA	4 cut(s)	18, 175, 266, 503
AluBI	AGCT	3 cut(s)	14, 50, 378
AluI	AGCT	3 cut(s)	14, 50, 378
Alw21I	GWGCWC	2 cut(s)	30, 548
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	3 cut(s)	208, 478, 575
ApeKI	GCWGC	3 cut(s)	47, 338, 395
ApoI	RAATTY	3 cut(s)	19, 503, 567
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	4 cut(s)	84, 195, 328, 493
BanII	GRGCYC	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	30, 548
BbvI	GCAGC	3 cut(s)	59, 350, 382
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	3 cut(s)	48, 339, 396
BlsI	GCNGC	3 cut(s)	49, 340, 397
BmiI	GGNNCC	1 cut(s)	152
BmsI	GCATC	3 cut(s)	34, 312, 382
BpmI	CTGGAG	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	405
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	159, 291
BseXI	GCAGC	3 cut(s)	59, 350, 382
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	30, 548
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	581
BsmAI	GTCTC	1 cut(s)	462
BsmBI	CGTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	30, 153, 548
Bsp1407I	TGTACA	2 cut(s)	273, 628
Bsp143I	GATC	4 cut(s)	183, 200, 483, 580
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	158, 292
BspFNI	CGCG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	3 cut(s)	208, 478, 575
BsrFI	RCCGGY	1 cut(s)	405
BsrGI	TGTACA	2 cut(s)	273, 628
BssAI	RCCGGY	1 cut(s)	405
BssMI	GATC	4 cut(s)	183, 200, 483, 580
Bst4CI	ACNGT	2 cut(s)	241, 687
Bst6I	CTCTTC	2 cut(s)	132, 290
BstAUI	TGTACA	2 cut(s)	273, 628
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	336, 380, 407
BstDEI	CTNAG	3 cut(s)	145, 300, 425
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	4 cut(s)	186, 203, 486, 583
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	4 cut(s)	183, 200, 483, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
BstUI	CGCG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	59, 350, 382
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	336, 380, 407
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	405
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	274, 629, 643
CviAII	CATG	2 cut(s)	128, 364
CviJI	RGCY	6 cut(s)	14, 50, 82, 151, 378, 409
CviKI_1	RGCY	6 cut(s)	14, 50, 82, 151, 378, 409
CviQI	GTAC	3 cut(s)	274, 629, 643
DdeI	CTNAG	3 cut(s)	145, 300, 425
DpnI	GATC	4 cut(s)	185, 202, 485, 582
DpnII	GATC	4 cut(s)	183, 200, 483, 580
DraIII	CACNNNGTG	1 cut(s)	497
Eam1104I	CTCTTC	2 cut(s)	132, 290
EarI	CTCTTC	2 cut(s)	132, 290
Eco24I	GRGCYC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	156
Eco72I	CACGTG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	2 cut(s)	131, 367
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	2 cut(s)	127, 363
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	48, 339, 396
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	48, 339, 396
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	3 cut(s)	48, 339, 396
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	661
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	131, 367
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	659, 674
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	4 cut(s)	84, 195, 328, 493
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	487, 678
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	544, 595
HpyCH4III	ACNGT	2 cut(s)	241, 687
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	6 cut(s)	39, 47, 59, 189, 359, 382
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
HpyF3I	CTNAG	3 cut(s)	145, 300, 425
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	131, 367
HspAI	GCGC	1 cut(s)	403
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	183, 200, 483, 580
LmnI	GCTCC	2 cut(s)	156, 375
LpnPI	CCDG	9 cut(s)	36, 45, 108, 132, 311, 320, 419, 500, 691
Lsp1109I	GCAGC	3 cut(s)	59, 350, 382
LweI	GCATC	3 cut(s)	34, 312, 382
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	191
MalI	GATC	4 cut(s)	185, 202, 485, 582
MboI	GATC	4 cut(s)	183, 200, 483, 580
MboII	GAAGA	4 cut(s)	123, 149, 207, 277
MhlI	GDGCHC	3 cut(s)	30, 153, 548
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	293, 312, 559, 664
MroNI	GCCGGC	1 cut(s)	405
MseI	TTAA	3 cut(s)	440, 474, 573
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
NaeI	GCCGGC	1 cut(s)	407
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	4 cut(s)	183, 200, 483, 580
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	2 cut(s)	131, 367
NlaIV	GGNNCC	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	49, 340, 397
PleI	GAGTC	1 cut(s)	668
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	668
Ppu21I	YACGTR	1 cut(s)	192
PsiI	TTATAA	2 cut(s)	470, 654
PspCI	CACGTG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	275, 630, 644
RsaNI	GTAC	3 cut(s)	274, 629, 643
SaqAI	TTAA	3 cut(s)	440, 474, 573
SatI	GCNGC	3 cut(s)	48, 339, 396
Sau3AI	GATC	4 cut(s)	183, 200, 483, 580
SchI	GAGTC	1 cut(s)	668
SduI	GDGCHC	3 cut(s)	30, 153, 548
SetI	ASST	8 cut(s)	16, 52, 194, 208, 318, 380, 536, 551
SfaNI	GCATC	3 cut(s)	34, 312, 382
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	241, 687
TaiI	ACGT	1 cut(s)	194
TatI	WGTACW	3 cut(s)	273, 628, 642
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	3 cut(s)	440, 474, 573
Tru9I	TTAA	3 cut(s)	440, 474, 573
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	47, 338, 395
TspDTI	ATGAA	3 cut(s)	277, 651, 687
TspGWI	ACGGA	2 cut(s)	13, 508
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	3 cut(s)	19, 503, 567
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.