Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Forward (+)

10140320 .. 10143668

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0113600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCAGCTAAAAGAGTCTGAAACAGCTGGCAGATTTAATGGAGAGCTGCATTTTTGTTTTGCCCACCAGGTTCATGCCATATTGAAGCAGTATCCCACTTTAAGAGTGGTAGTTGGGAATGCAGCCTTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGAAAGCACAAGTGAGGTCTATGTATTCAGGTCTGATCCTACAGAAAAGATGGTGTAGAGGGTCTGAAACCAAATGCAAGAGGGCCTGGTCTTGTCACTTTTGGGGTGCTCTACTGGACTTGAAAGAATGTATAATTCACGGAATAGGAACTATGGTGGCAAGATTAGTAGGTCTTGGTTTTGATTCTGACATTCATATGGAATGGTTCTTTCAAGCTCCAGAGTCTGTTCTGGATGCCCTACAGTACGATTGCAATCAATTTGCTGATGTGGCAACTCATGAGCCCTTGGATATGAAGTTAATGGCCAGAATTAAAAGTCAAGGAGAAACAAGTCCCAAAAGAGACCAAGGAGAGGATCTCAGTCATGTGTACATTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

180

Amino Acids

20.57

Weight (kDa)

6.7

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	190, 525
AcoI	YGGCCR	1 cut(s)	465
AfaI	GTAC	2 cut(s)	407, 533
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	4 cut(s)	85, 131, 283, 374
AjnI	CCWGG	2 cut(s)	66, 245
AluBI	AGCT	4 cut(s)	7, 26, 46, 377
AluI	AGCT	4 cut(s)	7, 26, 46, 377
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	190, 525
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	243, 465
ApeKI	GCWGC	3 cut(s)	4, 46, 122
AspS9I	GGNCC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	16, 33, 134
BccI	CCATC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	68, 247
BciVI	GTATCC	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	200, 401
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	3 cut(s)	5, 47, 123
BlsI	GCNGC	3 cut(s)	6, 48, 124
Bme1390I	CCNGG	2 cut(s)	68, 247
BmgT120I	GGNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	68, 247
BmsI	GCATC	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
BpmI	CTGGAG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	447, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	68, 247
BseDI	CCNNGG	2 cut(s)	447, 508
BseGI	GGATG	2 cut(s)	150, 400
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	16, 33, 134
BshFI	GGCC	2 cut(s)	245, 467
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	245, 467
Bso31I	GGTCTC	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	271, 447
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	195, 517
BspANI	GGCC	2 cut(s)	245, 467
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	439
BspPI	GGATC	2 cut(s)	190, 525
BspTNI	GGTCTC	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	447, 508
BssMI	GATC	2 cut(s)	195, 517
BssT1I	CCWWGG	2 cut(s)	447, 508
Bst2UI	CCWGG	2 cut(s)	68, 247
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	150, 400
BstKTI	GATC	2 cut(s)	198, 520
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	195, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	2 cut(s)	68, 247
BstSCI	CCNGG	2 cut(s)	66, 245
BstSFI	CTRYAG	2 cut(s)	200, 401
BstV1I	GCAGC	3 cut(s)	16, 33, 134
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	245, 467
BtsCI	GGATG	2 cut(s)	150, 400
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	243
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	406, 532
CviAII	CATG	3 cut(s)	74, 440, 527
CviJI	RGCY	8 cut(s)	7, 26, 46, 125, 245, 377, 445, 467
CviKI_1	RGCY	8 cut(s)	7, 26, 46, 125, 245, 377, 445, 467
CviQI	GTAC	2 cut(s)	406, 532
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	2 cut(s)	197, 519
DpnII	GATC	2 cut(s)	195, 517
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	447, 508
Eco24I	GRGCYC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	66, 245
EcoT14I	CCWWGG	2 cut(s)	447, 508
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	447, 508
FaeI	CATG	3 cut(s)	77, 443, 530
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	73, 439, 526
FauNDI	CATATG	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	5, 47, 123
FokI	GGATG	2 cut(s)	157, 407
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	3 cut(s)	5, 47, 123
GluI	GCNGC	3 cut(s)	5, 47, 123
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	245, 467
Hin1II	CATG	3 cut(s)	77, 443, 530
HinfI	GANTC	4 cut(s)	14, 131, 344, 383
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	4 cut(s)	19, 195, 226, 349
Hpy188III	TCNNGA	3 cut(s)	380, 392, 440
Hpy8I	GTNNAC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	4, 49, 122, 237, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	521
Hsp92II	CATG	3 cut(s)	77, 443, 530
Kzo9I	GATC	2 cut(s)	195, 517
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	3 cut(s)	16, 33, 134
LweI	GCATC	1 cut(s)	385
MabI	ACCWGGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	197, 519
MboI	GATC	2 cut(s)	195, 517
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	2 cut(s)	271, 447
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	3 cut(s)	294, 419, 471
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	2 cut(s)	23, 392
MnlI	CCTC	4 cut(s)	168, 212, 234, 508
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	4 cut(s)	36, 101, 461, 474
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	68, 247
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	68, 247
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	2 cut(s)	195, 517
NlaIII	CATG	3 cut(s)	77, 443, 530
NmuCI	GTSAC	1 cut(s)	254
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	131, 344
PkrI	GCNGC	3 cut(s)	6, 48, 124
PleI	GAGTC	2 cut(s)	22, 391
PpsI	GAGTC	2 cut(s)	22, 391
Psp6I	CCWGG	2 cut(s)	66, 245
PspGI	CCWGG	2 cut(s)	66, 245
PspPI	GGNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	407, 533
RsaNI	GTAC	2 cut(s)	406, 532
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	36, 101, 461, 474
SatI	GCNGC	3 cut(s)	5, 47, 123
Sau3AI	GATC	2 cut(s)	195, 517
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	23, 392
ScrFI	CCNGG	2 cut(s)	68, 247
SduI	GDGCHC	2 cut(s)	271, 447
SetI	ASST	9 cut(s)	9, 28, 48, 72, 179, 193, 334, 379, 542
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	2 cut(s)	200, 401
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	294, 419, 471
StyD4I	CCNGG	2 cut(s)	66, 245
StyI	CCWWGG	2 cut(s)	447, 508
TaaI	ACNGT	1 cut(s)	405
TasI	AATT	3 cut(s)	294, 419, 471
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	2 cut(s)	131, 344
Tru1I	TTAA	4 cut(s)	36, 101, 461, 474
Tru9I	TTAA	4 cut(s)	36, 101, 461, 474
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	3 cut(s)	4, 46, 122
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	62, 161, 344, 470
TspGWI	ACGGA	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.