Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Reverse (-)

24131518 .. 24134983

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTTCTTTCTTCTCAATATTCCGCATTTCTAATTGCCAAAGATGCAGCTGGGGTTGCCGGCAATATCTTTGCTTTTGGGCTGTTTGTTTCACCCATGCCCACATTTAAAAGAATCATCAGAAATGGTTCAACTGAAGAGTTCTCAGGGCTGCCATATATATATGCCCTTTTGAACTGCATGATCAGCATGTGGTATGGATCGCCTCTTATATCTACTGATAACATGTTGATTCTTACAGTCAATTCAGCTGGTGCAGTGTTTCAATTTGTCTACATAACCCTCTTCATAATCTATGCTGAGAAACCAAAAAAGGTGAGGATGCTGGGATTGCTGGTAGCAGTTTTTGGTCTATTTGCAATCATAGTCGTTGGGAGCTTGCAGATATCTGACCTTTTTCTCCGACGGACAATCGTTGGATTGCTTAGCTGTTTTTCTCTTATATCTATGTTTGCTTCGCCATTGTTTATAATAAACTTGGTGATCCGTACAAAGAGTGTTGAGTACATGCCATTTTATCTCTCCCTTTCCACCTTCCTAATGAGCACCTGTTTCCTTCTGTATGGAATTTTTAATTACGATCCGTACGTTTATGTCCCTAATGGGATAGGAACAATTTTGGGAATTGTACAATTGGCATTGTACTTTCACAAGTTTGACAACAAGGAAAGACAAAGTAAGTGTTGTTTCATTGAAGTGAGTGTTATCATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

238

Amino Acids

26.68

Weight (kDa)

8.93

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	1.7e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 217	2.7e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	208, 478, 575
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	5 cut(s)	490, 506, 587, 630, 644
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	4 cut(s)	132, 175, 266, 695
AluBI	AGCT	4 cut(s)	50, 251, 378, 429
AluI	AGCT	4 cut(s)	50, 251, 378, 429
Alw21I	GWGCWC	1 cut(s)	548
AlwI	GGATC	3 cut(s)	208, 478, 575
ApeKI	GCWGC	2 cut(s)	47, 151
ApoI	RAATTY	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	84, 328, 493
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	59, 138
BclI	TGATCA	1 cut(s)	183
BisI	GCNGC	2 cut(s)	48, 152
BlpI	GCTNAGC	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	49, 153
BmsI	GCATC	2 cut(s)	34, 312
Bpu1102I	GCTNAGC	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	59
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	159, 291
BseXI	GCAGC	2 cut(s)	59, 138
BseYI	CCCAGC	2 cut(s)	50, 325
BsgI	GTGCAG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	60
BsiWI	CGTACG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	183, 200, 483, 580
Bsp1720I	GCTNAGC	1 cut(s)	425
BspACI	CCGC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	158, 292
BspPI	GGATC	3 cut(s)	208, 478, 575
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	59
BssMI	GATC	4 cut(s)	183, 200, 483, 580
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	132, 290
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	61, 380
BstDEI	CTNAG	3 cut(s)	145, 300, 425
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	4 cut(s)	186, 203, 486, 583
BstMBI	GATC	4 cut(s)	183, 200, 483, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 56, 186, 331
BstNSI	RCATGY	3 cut(s)	193, 229, 511
BstV1I	GCAGC	2 cut(s)	59, 138
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	61, 380
Cfr10I	RCCGGY	1 cut(s)	59
Csp6I	GTAC	5 cut(s)	489, 505, 586, 629, 643
CviAII	CATG	5 cut(s)	97, 181, 190, 226, 508
CviJI	RGCY	6 cut(s)	50, 82, 151, 251, 378, 429
CviKI_1	RGCY	6 cut(s)	50, 82, 151, 251, 378, 429
CviQI	GTAC	5 cut(s)	489, 505, 586, 629, 643
DdeI	CTNAG	3 cut(s)	145, 300, 425
DpnI	GATC	4 cut(s)	185, 202, 485, 582
DpnII	GATC	4 cut(s)	183, 200, 483, 580
DraI	TTTAAA	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	132, 290
EarI	CTCTTC	2 cut(s)	132, 290
Eco32I	GATATC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	387
FaeI	CATG	5 cut(s)	100, 184, 193, 229, 511
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	5 cut(s)	96, 180, 189, 225, 507
FbaI	TGATCA	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	48, 152
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	48, 152
GluI	GCNGC	2 cut(s)	48, 152
GsaI	CCCAGC	2 cut(s)	54, 329
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	5 cut(s)	100, 184, 193, 229, 511
HinfI	GANTC	2 cut(s)	114, 232
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	84, 328, 493
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	122, 391, 404
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	2 cut(s)	544, 566
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	5 cut(s)	47, 180, 257, 359, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 56, 186, 331
HpyF3I	CTNAG	3 cut(s)	145, 300, 425
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	5 cut(s)	100, 184, 193, 229, 511
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	183, 200, 483, 580
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	7 cut(s)	36, 73, 132, 237, 311, 320, 562
Lsp1109I	GCAGC	2 cut(s)	59, 138
LweI	GCATC	2 cut(s)	34, 312
MaeII	ACGT	1 cut(s)	588
MalI	GATC	4 cut(s)	185, 202, 485, 582
MboI	GATC	4 cut(s)	183, 200, 483, 580
MboII	GAAGA	3 cut(s)	3, 149, 277
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	8 cut(s)	33, 244, 266, 567, 574, 615, 624, 632
MmeI	TCCRAC	2 cut(s)	397, 427
MnlI	CCTC	3 cut(s)	216, 293, 312
MroNI	GCCGGC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	3 cut(s)	108, 573, 715
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	2 cut(s)	50, 251
MspI	CCGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	4 cut(s)	44, 56, 186, 331
NaeI	GCCGGC	1 cut(s)	61
NdeII	GATC	4 cut(s)	183, 200, 483, 580
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	5 cut(s)	100, 184, 193, 229, 511
NspI	RCATGY	3 cut(s)	193, 229, 511
PciI	ACATGT	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PdiI	GCCGGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	114, 232
Pfl23II	CGTACG	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	49, 153
PscI	ACATGT	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	470
PspFI	CCCAGC	2 cut(s)	50, 325
PspLI	CGTACG	1 cut(s)	585
PvuII	CAGCTG	2 cut(s)	50, 251
RsaI	GTAC	5 cut(s)	490, 506, 587, 630, 644
RsaNI	GTAC	5 cut(s)	489, 505, 586, 629, 643
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	3 cut(s)	108, 573, 715
SatI	GCNGC	2 cut(s)	48, 152
Sau3AI	GATC	4 cut(s)	183, 200, 483, 580
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	9 cut(s)	52, 253, 318, 380, 396, 431, 536, 551, 591
SfaNI	GCATC	2 cut(s)	34, 312
SmiMI	CAYNNNNRTG	1 cut(s)	695
Sse9I	AATT	8 cut(s)	33, 244, 266, 567, 574, 615, 624, 632
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	591
TasI	AATT	8 cut(s)	33, 244, 266, 567, 574, 615, 624, 632
TatI	WGTACW	3 cut(s)	504, 628, 642
TfiI	GAWTC	2 cut(s)	114, 232
Tru1I	TTAA	3 cut(s)	108, 573, 715
Tru9I	TTAA	3 cut(s)	108, 573, 715
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	47, 151
TspDTI	ATGAA	2 cut(s)	277, 679
TspGWI	ACGGA	3 cut(s)	421, 476, 573
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	3 cut(s)	193, 229, 511
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.