Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Forward (+)

10132250 .. 10132603

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTGGTATGTTGTGTCTGAACGTTGATGGTGCTTATGTTCCTTCACTACAACATGGAGGCACAGGAGGTGTTCTGCGTAATGAGAAGGGCGAGTTTGTCGCTGGCTTTGCTTATAGGATGCCTAATGTGTATTCTGCTTATCATACTGAGCTGCTTGCTATTAAATCTGGGTTGGAGATCATTCAGGCACTTGGCATGTCCAATATTGCTTTAATGAGTGATTGTTTAGAGGCTGTCAAGGCTGTGACAGAAGAGGACCAAGATTTATCTCCTTTGGGAACTATTCACTACACCAAAAACCTTATCAGACGACACTTTTTGCACAACGAAAAAAAAAAAAGTGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

6.5

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	8 - 98	2.7e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	24
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	23
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	111
BseGI	GGATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	142
BssMI	GATC	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	106, 159
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 242
BstNSI	RCATGY	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	106, 159
Cfr13I	GGNCC	1 cut(s)	259
CviAII	CATG	2 cut(s)	56, 199
CviJI	RGCY	4 cut(s)	108, 154, 236, 245
CviKI_1	RGCY	4 cut(s)	108, 154, 236, 245
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	259
FaeI	CATG	2 cut(s)	59, 202
FaiI	YATR	6 cut(s)	11, 39, 57, 117, 147, 200
FatI	CATG	2 cut(s)	55, 198
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	59, 202
Hpy188I	TCNGA	2 cut(s)	21, 311
HpyAV	CCTTC	2 cut(s)	54, 82
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 242
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	59, 202
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	51, 90, 156, 173
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	111
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	4 cut(s)	53, 62, 226, 250
MseI	TTAA	2 cut(s)	165, 215
MwoI	GCNNNNNNNGC	2 cut(s)	110, 242
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	59, 202
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	165, 215
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	259
SetI	ASST	4 cut(s)	27, 73, 156, 306
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	259
SspI	AATATT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	165, 215
Tru9I	TTAA	2 cut(s)	165, 215
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	259
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.