Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Reverse (-)

8912151 .. 8916616

Gene Structure 4466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTTTTTTCTGCTTCACATTCCGTGTTCATTATCTGCCGAGATGCAGCTGGAATCGCAGGGAACATATTTGCTTTTGGGCTGTTTCTTTCACCAATACACACATATAGAAGAATCATCAGAAACCGTTCAACTGAAGAGTTCTCAGGGCTGCCATACATATATGCCCTTTTGAACTGCTTGATCTGCACATGGTATGGATCGCCTCTTGTATCTTCTGATAATTTACTGATCATGACGGTGAATTCAGCTGGTGCAGTGTTTCAATTAGTCTACATAGCCCTCTTCATAATATATGCTGAGAAATCGAAAAAGGTGAGGATGCTGGGATTTCTGTTGGCAGATTTTGGTCTATTTGCAATCATAGTTTTTGGGAGCTTGCAAATGACTGACCTTGTTATGCGCCGGCTGATTGTTGGACTGCTTAGTTGTGTTTCTCTCATATCAATGTTTGCTTCTCCCATGTTTATAATTAACTTGGTGATCCGGACAAAGAGTGTCGAATTTATGCCATTTTATCTCTCCCTTTCTACCTTCCTAATGAGCACGTCATTCTTTCTTTATGGAATTTTTAATTACGATCTCTTCATTTATGTTCCAAATGGCATAGGAACCATTTTGGGGATTATACAGTTAGCTTTGTACTTTTACTATAAGGATTCATCTAAAGAAGACTCCAGAGAACCGTTGATAGTTCCATATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

26.52

Weight (kDa)

8.63

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	486
AclWI	GGATC	2 cut(s)	208, 478
AcsI	RAATTY	3 cut(s)	244, 503, 567
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	132, 175, 266
AjiI	CACGTC	1 cut(s)	549
AluBI	AGCT	4 cut(s)	50, 251, 378, 638
AluI	AGCT	4 cut(s)	50, 251, 378, 638
Alw21I	GWGCWC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	208, 478
Aor13HI	TCCGGA	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	47, 151
ApoI	RAATTY	3 cut(s)	244, 503, 567
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	4 cut(s)	84, 253, 328, 493
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	59, 138
BclI	TGATCA	1 cut(s)	231
BisI	GCNGC	2 cut(s)	48, 152
BlsI	GCNGC	2 cut(s)	49, 153
BmgBI	CACGTC	1 cut(s)	549
BmiI	GGNNCC	1 cut(s)	613
BmsI	GCATC	2 cut(s)	34, 312
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	661
BsaWI	WCCGGW	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	486
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	159, 291
BseXI	GCAGC	2 cut(s)	59, 138
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	2 cut(s)	172, 276
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	406, 487
BslI	CCNNNNNNNGG	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp13I	TCCGGA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	183, 200, 231, 483, 580
BspCNI	CTCAG	2 cut(s)	158, 292
BspEI	TCCGGA	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	2 cut(s)	208, 478
BsrFI	RCCGGY	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	405
BssMI	GATC	5 cut(s)	183, 200, 231, 483, 580
Bst4CI	ACNGT	4 cut(s)	128, 241, 633, 687
Bst6I	CTCTTC	3 cut(s)	132, 290, 590
BstC8I	GCNNGC	2 cut(s)	380, 407
BstDEI	CTNAG	3 cut(s)	145, 300, 425
BstF5I	GGATG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	5 cut(s)	186, 203, 234, 486, 583
BstMBI	GATC	5 cut(s)	183, 200, 231, 483, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 186
BstV1I	GCAGC	2 cut(s)	59, 138
BstV2I	GAAGAC	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	380, 407
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	3 cut(s)	192, 235, 463
CviJI	RGCY	8 cut(s)	50, 82, 151, 251, 281, 378, 409, 638
CviKI_1	RGCY	8 cut(s)	50, 82, 151, 251, 281, 378, 409, 638
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	3 cut(s)	145, 300, 425
DpnI	GATC	5 cut(s)	185, 202, 233, 485, 582
DpnII	GATC	5 cut(s)	183, 200, 231, 483, 580
Eam1104I	CTCTTC	3 cut(s)	132, 290, 590
EarI	CTCTTC	3 cut(s)	132, 290, 590
Eco57I	CTGAAG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	244
FaeI	CATG	3 cut(s)	195, 238, 466
FatI	CATG	3 cut(s)	191, 234, 462
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	48, 152
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	48, 152
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	2 cut(s)	48, 152
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	661
HapII	CCGG	2 cut(s)	406, 487
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	195, 238, 466
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	4 cut(s)	54, 114, 659, 674
HpaII	CCGG	2 cut(s)	406, 487
HphI	GGTGA	4 cut(s)	84, 253, 328, 493
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	122, 220
Hpy188III	TCNNGA	3 cut(s)	235, 487, 678
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	4 cut(s)	128, 241, 633, 687
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	5 cut(s)	47, 189, 257, 359, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 186
HpyF3I	CTNAG	3 cut(s)	145, 300, 425
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	3 cut(s)	195, 238, 466
HspAI	GCGC	1 cut(s)	403
Kpn2I	TCCGGA	1 cut(s)	486
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	183, 200, 231, 483, 580
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	8 cut(s)	36, 45, 132, 237, 311, 419, 500, 691
Lsp1109I	GCAGC	2 cut(s)	59, 138
LweI	GCATC	2 cut(s)	34, 312
MaeII	ACGT	1 cut(s)	548
MalI	GATC	5 cut(s)	185, 202, 233, 485, 582
MboI	GATC	5 cut(s)	183, 200, 231, 483, 580
MboII	GAAGA	6 cut(s)	123, 149, 207, 277, 577, 683
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	7 cut(s)	223, 244, 266, 471, 503, 567, 574
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	3 cut(s)	216, 293, 312
MroI	TCCGGA	1 cut(s)	486
MroNI	GCCGGC	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	2 cut(s)	474, 573
MslI	CAYNNNNRTG	2 cut(s)	239, 446
MspA1I	CMGCKG	2 cut(s)	50, 251
MspI	CCGG	2 cut(s)	406, 487
MwoI	GCNNNNNNNGC	2 cut(s)	56, 186
NaeI	GCCGGC	1 cut(s)	407
NdeII	GATC	5 cut(s)	183, 200, 231, 483, 580
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	3 cut(s)	195, 238, 466
NlaIV	GGNNCC	1 cut(s)	613
NmeAIII	GCCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	54, 114, 659
PkrI	GCNGC	2 cut(s)	49, 153
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
PsiI	TTATAA	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	613
PvuII	CAGCTG	2 cut(s)	50, 251
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	239, 446
SaqAI	TTAA	2 cut(s)	474, 573
SatI	GCNGC	2 cut(s)	48, 152
Sau3AI	GATC	5 cut(s)	183, 200, 231, 483, 580
SchI	GAGTC	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	8 cut(s)	52, 253, 318, 380, 396, 536, 551, 640
SfaNI	GCATC	2 cut(s)	34, 312
SmiMI	CAYNNNNRTG	2 cut(s)	239, 446
Sse9I	AATT	7 cut(s)	223, 244, 266, 471, 503, 567, 574
TaaI	ACNGT	4 cut(s)	128, 241, 633, 687
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	308, 501
TasI	AATT	7 cut(s)	223, 244, 266, 471, 503, 567, 574
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	3 cut(s)	54, 114, 659
Tru1I	TTAA	2 cut(s)	474, 573
Tru9I	TTAA	2 cut(s)	474, 573
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	47, 151
TspDTI	ATGAA	4 cut(s)	19, 277, 577, 651
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	3 cut(s)	244, 503, 567
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.