Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006610

Physical Location & Seq

Genomic Coordinates Forward (+)

33875915 .. 33879929

Gene Structure 4015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1250600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTTTTTTCACCTTCAAATCCCGTGTTCATAATCTGCAAAGGTGCAGCTGGAATTGCAGGGAACATCTTTGCTTTTGGACTGTTTGTTTCACCAATACACACATTTAGAAGAATAATGAGAAACCGTGCCACTGAAGAGTTCTCAGGGCTCCCATACATATATGCCCTTTTGAACTGCTTGATCAGCATGTGGTATGGATCGCCTATTATATCCCCTGATAACATAATGGTTATGACGGTCAATTCAGTTGGTGCGGTGTTTCAATTAGTGTACATAACCCTCTTCATAATATACGCTGAGAGAACAAAAAAGATGAGGATGCTGGGATTGCTGGCAGCAGTTTGTGGTCTAATTGCAATCATAGTATATGGGAGCTTGCAAATTCCTGATGCTGCTTTGCGTCGGCTAGTTGTTGGACTGCTTAGTTGTGCATCTCTAATATCAATGTTTGCGTCTCCTTTGTTTATAATTAACTTGGTGATCCGGACAAAGAGTGTCGAATTTATGCCATTCTATCTCTCCCTTTCCACCTTCCTCATGAGCACCTCTTTCTTGCTTTATGGAATTTTTAATTTTGATCTCTTCGTTTATGTCCCAAATGGAGTAGGAACCATTTTGGGGATTGTACAATTAGCGTTGTACTTTCATTATAAGGATTCGTCTAAAGGAAACTCCAGAGAACCGTTGTTAGTTTCATATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

26.04

Weight (kDa)

9.34

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	2.6e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 221	3.2e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14770
fragaria_vesca	FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630 FvH4_3g17630
malus_domestica	MD03G1250600.v1.1 MD11G1270800.v1.1
prunus_persica	Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1 Prupe.4G155700_v2.0.a1
pyrus_communis	pycom03g19830 pycom11g23950
rosa_chinensis	RchiOBHm_Chr5g0029361
rosa_laevigata	RLG00000033158
rosa_multiflora	Rmu_sc0000566.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050640
rosa_rugosa	Rorug05G0113500 Rorug05G0113600 Rorug05G0113700.1
rosa_samantha	Rh5AG205500 Rh5BG204000 Rh5CG225900 Rh5DG207500
rosa_wichuraiana	Rw5G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	470, 654
AccIII	TCCGGA	1 cut(s)	486
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	2 cut(s)	208, 478
AcsI	RAATTY	3 cut(s)	384, 503, 567
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	3 cut(s)	275, 630, 644
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	18, 175, 266
AluBI	AGCT	2 cut(s)	50, 378
AluI	AGCT	2 cut(s)	50, 378
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	208, 478
Aor13HI	TCCGGA	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	47, 338, 395
ApoI	RAATTY	3 cut(s)	384, 503, 567
AsuHPI	GGTGA	3 cut(s)	3, 84, 493
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	3 cut(s)	59, 350, 382
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	3 cut(s)	48, 339, 396
BlsI	GCNGC	3 cut(s)	49, 340, 397
BmiI	GGNNCC	2 cut(s)	152, 613
BmsI	GCATC	3 cut(s)	312, 382, 443
BpmI	CTGGAG	1 cut(s)	661
BsaWI	WCCGGW	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	486
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	159, 291
BseXI	GCAGC	3 cut(s)	59, 350, 382
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	1 cut(s)	462
BsmBI	CGTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	153, 548
Bsp13I	TCCGGA	1 cut(s)	486
Bsp1407I	TGTACA	2 cut(s)	273, 628
Bsp143I	GATC	4 cut(s)	183, 200, 483, 580
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	158, 292
BspEI	TCCGGA	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	152, 613
BspPI	GGATC	2 cut(s)	208, 478
BsrGI	TGTACA	2 cut(s)	273, 628
BssMI	GATC	4 cut(s)	183, 200, 483, 580
Bst4CI	ACNGT	4 cut(s)	84, 128, 241, 687
Bst6I	CTCTTC	3 cut(s)	132, 290, 590
BstAUI	TGTACA	2 cut(s)	273, 628
BstC8I	GCNNGC	2 cut(s)	336, 380
BstDEI	CTNAG	3 cut(s)	145, 300, 425
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	4 cut(s)	186, 203, 486, 583
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	4 cut(s)	183, 200, 483, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
BstNSI	RCATGY	1 cut(s)	193
BstV1I	GCAGC	3 cut(s)	59, 350, 382
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	336, 380
CciI	TCATGA	1 cut(s)	540
CseI	GACGC	2 cut(s)	392, 444
Csp6I	GTAC	3 cut(s)	274, 629, 643
CviAII	CATG	2 cut(s)	190, 541
CviJI	RGCY	4 cut(s)	50, 151, 378, 409
CviKI_1	RGCY	4 cut(s)	50, 151, 378, 409
CviQI	GTAC	3 cut(s)	274, 629, 643
DdeI	CTNAG	3 cut(s)	145, 300, 425
DpnI	GATC	4 cut(s)	185, 202, 485, 582
DpnII	GATC	4 cut(s)	183, 200, 483, 580
Eam1104I	CTCTTC	3 cut(s)	132, 290, 590
EarI	CTCTTC	3 cut(s)	132, 290, 590
Eco24I	GRGCYC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	2 cut(s)	193, 544
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	2 cut(s)	189, 540
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	48, 339, 396
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	48, 339, 396
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	3 cut(s)	48, 339, 396
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	661
HapII	CCGG	1 cut(s)	487
HgaI	GACGC	2 cut(s)	392, 444
Hin1II	CATG	2 cut(s)	193, 544
HinfI	GANTC	1 cut(s)	659
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	3 cut(s)	3, 84, 493
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188III	TCNNGA	4 cut(s)	389, 487, 541, 678
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	2 cut(s)	24, 544
HpyCH4III	ACNGT	4 cut(s)	84, 128, 241, 687
HpyCH4V	TGCA	7 cut(s)	39, 47, 59, 359, 382, 434, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
HpyF3I	CTNAG	3 cut(s)	145, 300, 425
Hsp92II	CATG	2 cut(s)	193, 544
Kpn2I	TCCGGA	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	183, 200, 483, 580
LmnI	GCTCC	2 cut(s)	156, 375
LpnPI	CCDG	9 cut(s)	36, 45, 132, 231, 311, 320, 402, 500, 691
Lsp1109I	GCAGC	3 cut(s)	59, 350, 382
LweI	GCATC	3 cut(s)	312, 382, 443
MaeI	CTAG	1 cut(s)	410
MalI	GATC	4 cut(s)	185, 202, 485, 582
MboI	GATC	4 cut(s)	183, 200, 483, 580
MboII	GAAGA	4 cut(s)	123, 149, 277, 577
MhlI	GDGCHC	2 cut(s)	153, 548
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	293, 312, 548, 559
Mph1103I	ATGCAT	1 cut(s)	706
MroI	TCCGGA	1 cut(s)	486
MseI	TTAA	2 cut(s)	474, 573
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	4 cut(s)	183, 200, 483, 580
NlaIII	CATG	2 cut(s)	193, 544
NlaIV	GGNNCC	2 cut(s)	152, 613
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	1 cut(s)	193
PagI	TCATGA	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	49, 340, 397
PsiI	TTATAA	2 cut(s)	470, 654
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	152, 613
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	275, 630, 644
RsaNI	GTAC	3 cut(s)	274, 629, 643
SaqAI	TTAA	2 cut(s)	474, 573
SatI	GCNGC	3 cut(s)	48, 339, 396
Sau3AI	GATC	4 cut(s)	183, 200, 483, 580
SduI	GDGCHC	2 cut(s)	153, 548
SetI	ASST	6 cut(s)	16, 46, 52, 380, 536, 551
SfaNI	GCATC	3 cut(s)	312, 382, 443
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	4 cut(s)	84, 128, 241, 687
TaqI	TCGA	1 cut(s)	501
TatI	WGTACW	3 cut(s)	273, 628, 642
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	2 cut(s)	474, 573
Tru9I	TTAA	2 cut(s)	474, 573
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	47, 338, 395
TspDTI	ATGAA	4 cut(s)	19, 277, 638, 687
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	3 cut(s)	384, 503, 567
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.