FvH4_3g18120

nucleotide-excision repair, DNA gap filling

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11546284 .. 11551142
4859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18120.t2

Sequence Viewer

Length: 1758 bp
ATGGCCCAAATCGAAACCCAGGGCATACTCCAGGACATCGAAACCCTCGTCTCCGATCAGCTTCAAGTGGTTTCTTACAAATGGCTGAGTCGGAATTACTTGGTGTCGTCCAATGATGCAAAGAGGTTGCTCCAGGAGTTTGTGGAGAATCATGGGAATGGTTTGGAAGTGGTGTATATTTTGTCTGGTCAGTTGAAGAACAATCCTGTCAGCTACCATGTCAGGCTTGTTTCGGGGACTCAACTTGCAGAAGCAAAAGAAGAATTTGATGGCAACTTCTCCGTTGGGGTTTACAGTGTGCAACCTTCCATTCCAAAGGATCCAGCTACAATATGGAATGCGGAATTTGTGCAGGCAGAGGAGCTCCATACGCAGGCTCCAACAGTTGAAAATTGCCTAAGAGATAACAGGTTCTGCGCTATTCTCAATTCCTTTGTTACGCGTAATGTAGAGGGAGCACCATTGAGCACTGCAGGTTCACTACCCAAGACCAAATTATCTGCAGAGCCATCAAAAGTTAATTTAGCTCATCAAGGTAGTGTGATTCCAAAACAGCAACAGAATAAAGAAGAACAATCTAGTCCGAGAGTTGGTTTGCAGGCTCCCAATGTGGTGAAAGATGTCAAAAGTGAAAGCAATGGCATAGGAGTTACTCATCAGCCTAACAAACCTCCTGCTGACAAAGAAAAAGTTGTTCTTCCTGCTAACAAAAAGAAGGTCCAGAGTGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGACGTGCATCTGTGAAGTCAAATTCAAATTCTACAGCTGAAAATAATAATTTGATTCCTACACATACTGGTGCTAGTGCAGATGCTCAGATTTGTGCTAGAGAAGCAGAACCTGGTGCCATTAGTGATGACGATGATCAAGATGTTAATTTTAAAAGAGCTTCCATTTCTGAAGTCACTAGGAAACGAAGGGTTGTCTTTGATTTCTCAGATGAAGATGAATGTGAAGATGCAGTCAATTTAGCATCACCAGAGTGTCCAAAAGGAAAATCATATCAAGAGGACAAAGAATGTAGCGAAACTTTGGTTCCACATAAATCCAATTTGAAGTTTGACGAGCAGGCAGAAGATAAACCAGAGGTCAAGGAAGAGATATCAGTTGACGGAGAATCGAACCCACCTTGCAGAGAAGATTCCACGGTTGTCAGCAAGGACAAGATTTCTCCAATTATCCTGACAGAGAAAACAGATAGATTTGGTCCTCAAAATAATCCAAACAAAATGGATAAGCTGGCCACTGCTGCTAAGACACAGAGAGATGCTGGGATTATCCTAACGGAGAAAAAACGTACCTCTATTCCTGAAAATGATGTGAACAAAATGGATAAACCGACGAACGGTGCATCAAGATCTCCTCAAAGAAGAAAAGTTTTGAAGACTCGGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAGTATGGGAGGGCAAGGAGTCAGAAGCAAAGAAAGCTGATAGCAGTACGACAGTGAAAGCTGACAGCAGTACAGCAAAGAAAGCTGACAGCAGTACAGCAAAGAAAGCTGACAGCAGTACAACAACGAAAGCTGATAGTACAGTTACCAGTGTTACCAACAGGCCTCCCACAGCTCAGAAGTCAGTGGCAAATACTGGTCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTAAACAAGGATCCTAAGCAAGGAAGTATTATGTCATTCTTCAAGAAGGCCTAA

Protein Analysis

586

Amino Acids

63.63

Weight (kDa)

7.54

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC27 PF09507 23 - 379 1e-17 DNA polymerase subunit Cdc27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 887
AccII CGCG 1 cut(s) 442
AciI CCGC 1 cut(s) 341
AclWI GGATC 4 cut(s) 314, 327, 1709, 1722
AcoI YGGCCR 1 cut(s) 1284
AcsI RAATTY 5 cut(s) 263, 344, 763, 793, 799
AcuI CTGAAG 1 cut(s) 963
AfaI GTAC 6 cut(s) 1342, 1513, 1537, 1561, 1585, 1606
AfiI CCNNNNNNNGG 4 cut(s) 373, 590, 1388, 1724
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 7 cut(s) 65, 196, 389, 798, 1099, 1426, 1747
AjiI CACGTC 1 cut(s) 776
AjnI CCWGG 4 cut(s) 18, 30, 132, 883
AleI CACNNNNGTG 1 cut(s) 1024
Alw21I GWGCWC 3 cut(s) 366, 460, 470
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 4 cut(s) 314, 327, 1709, 1722
AlwNI CAGNNNCTG 2 cut(s) 414, 884
AoxI GGCC 4 cut(s) 3, 1284, 1628, 1752
ApeKI GCWGC 1 cut(s) 1292
ApoI RAATTY 5 cut(s) 263, 344, 763, 793, 799
ArsI GACNNNNNNTTYG 4 cut(s) 33, 65, 702, 734
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 4 cut(s) 4, 718, 1250, 1664
AsuHPI GGTGA 2 cut(s) 625, 1011
AvaII GGWCC 3 cut(s) 718, 1250, 1664
BalI TGGCCA 1 cut(s) 1286
BamHI GGATCC 2 cut(s) 319, 1714
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 1433
Bbv12I GWGCWC 3 cut(s) 366, 460, 470
BbvI GCAGC 1 cut(s) 1279
BccI CCATC 2 cut(s) 263, 517
BciT130I CCWGG 4 cut(s) 20, 32, 134, 885
BclI TGATCA 1 cut(s) 907
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 4 cut(s) 579, 846, 870, 951
BfmI CTRYAG 3 cut(s) 471, 501, 804
BfuAI ACCTGC 1 cut(s) 464
BglII AGATCT 1 cut(s) 1400
BisI GCNGC 1 cut(s) 1293
BlsI GCNGC 1 cut(s) 1294
Bme1390I CCNGG 4 cut(s) 20, 32, 134, 885
Bme18I GGWCC 3 cut(s) 718, 1250, 1664
BmgBI CACGTC 1 cut(s) 776
BmgT120I GGNCC 4 cut(s) 4, 718, 1250, 1664
BmiI GGNNCC 6 cut(s) 321, 378, 603, 889, 1080, 1716
BmrFI CCNGG 4 cut(s) 20, 32, 134, 885
BmsI GCATC 7 cut(s) 106, 788, 844, 991, 1025, 1300, 1403
BpiI GAAGAC 1 cut(s) 1433
BpmI CTGGAG 3 cut(s) 14, 116, 768
Bpu10I CCTNAGC 1 cut(s) 1719
BsaJI CCNNGG 3 cut(s) 18, 19, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 590, 1388, 1724
Bse1I ACTGG 3 cut(s) 844, 1614, 1666
Bse3DI GCAATG 1 cut(s) 643
BseBI CCWGG 4 cut(s) 20, 32, 134, 885
BseDI CCNNGG 3 cut(s) 18, 19, 1188
BseLI CCNNNNNNNGG 4 cut(s) 373, 590, 1388, 1724
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 5 cut(s) 77, 872, 993, 1452, 1655
BseNI ACTGG 3 cut(s) 844, 1614, 1666
BseRI GAGGAG 2 cut(s) 374, 1395
BseXI GCAGC 1 cut(s) 1279
BseYI CCCAGC 1 cut(s) 1313
BsgI GTGCAG 2 cut(s) 371, 870
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 4 cut(s) 5, 1286, 1630, 1754
BshNI GGYRCC 1 cut(s) 887
BsiHKAI GWGCWC 3 cut(s) 366, 460, 470
BslFI GGGAC 2 cut(s) 250, 786
BslI CCNNNNNNNGG 4 cut(s) 373, 590, 1388, 1724
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 250, 786
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 4 cut(s) 5, 1286, 1630, 1754
Bsp1286I GDGCHC 3 cut(s) 366, 460, 470
Bsp143I GATC 5 cut(s) 55, 319, 907, 1400, 1714
BspACI CCGC 1 cut(s) 341
BspANI GGCC 4 cut(s) 5, 1286, 1630, 1754
BspCNI CTCAG 5 cut(s) 78, 871, 992, 1453, 1654
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 6 cut(s) 321, 378, 603, 889, 1080, 1716
BspMAI CTGCAG 2 cut(s) 475, 505
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 4 cut(s) 314, 327, 1709, 1722
BspQI GCTCTTC 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 3 cut(s) 844, 1614, 1666
BssECI CCNNGG 3 cut(s) 18, 19, 1188
BssMI GATC 5 cut(s) 55, 319, 907, 1400, 1714
Bst2UI CCWGG 4 cut(s) 20, 32, 134, 885
Bst4CI ACNGT 6 cut(s) 296, 385, 1192, 1391, 1519, 1609
Bst6I CTCTTC 3 cut(s) 742, 1134, 1444
BstC8I GCNNGC 5 cut(s) 354, 375, 600, 1113, 1284
BstDEI CTNAG 8 cut(s) 86, 398, 858, 979, 1296, 1461, 1641, 1719
BstDSI CCRYGG 1 cut(s) 1188
BstENI CCTNNNNNAGG 1 cut(s) 1722
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 5 cut(s) 58, 322, 910, 1403, 1717
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 5 cut(s) 55, 319, 907, 1400, 1714
BstMWI GCNNNNNNNGC 6 cut(s) 370, 875, 1292, 1499, 1547, 1571
BstNI CCWGG 4 cut(s) 20, 32, 134, 885
BstSCI CCNGG 4 cut(s) 18, 30, 132, 883
BstSFI CTRYAG 3 cut(s) 471, 501, 804
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 1279
BstV2I GAAGAC 1 cut(s) 1433
BstX2I RGATCY 3 cut(s) 319, 1400, 1714
BstYI RGATCY 3 cut(s) 319, 1400, 1714
BsuRI GGCC 4 cut(s) 5, 1286, 1630, 1754
BtgI CCRYGG 1 cut(s) 1188
BtrI CACGTC 1 cut(s) 776
BtsI GCAGTG 2 cut(s) 468, 1287
BtsIMutI CAGTG 6 cut(s) 301, 468, 1287, 1524, 1621, 1656
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 5 cut(s) 354, 375, 600, 1113, 1284
CaiI CAGNNNCTG 2 cut(s) 414, 884
CfoI GCGC 1 cut(s) 419
Cfr13I GGNCC 4 cut(s) 4, 718, 1250, 1664
CsiI ACCWGGT 1 cut(s) 883
Csp6I GTAC 6 cut(s) 1341, 1512, 1536, 1560, 1584, 1605
CviAII CATG 2 cut(s) 152, 218
CviQI GTAC 6 cut(s) 1341, 1512, 1536, 1560, 1584, 1605
DdeI CTNAG 8 cut(s) 86, 398, 858, 979, 1296, 1461, 1641, 1719
DpnI GATC 5 cut(s) 57, 321, 909, 1402, 1716
DpnII GATC 5 cut(s) 55, 319, 907, 1400, 1714
DraI TTTAAA 1 cut(s) 925
EaeI YGGCCR 1 cut(s) 1284
Eam1104I CTCTTC 3 cut(s) 742, 1134, 1444
EarI CTCTTC 3 cut(s) 742, 1134, 1444
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 2 cut(s) 1630, 1754
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 1146
Eco47I GGWCC 3 cut(s) 718, 1250, 1664
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 1722
EcoRII CCWGG 4 cut(s) 18, 30, 132, 883
EcoRV GATATC 1 cut(s) 1146
EcoT38I GRGCYC 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 2 cut(s) 155, 221
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 2 cut(s) 250, 786
FatI CATG 2 cut(s) 151, 217
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 1 cut(s) 1293
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 1293
FspBI CTAG 4 cut(s) 579, 846, 870, 951
GlaI GCGC 1 cut(s) 418
GluI GCNGC 1 cut(s) 1293
GsaI CCCAGC 1 cut(s) 1317
GsuI CTGGAG 3 cut(s) 14, 116, 768
HaeIII GGCC 4 cut(s) 5, 1286, 1630, 1754
HhaI GCGC 1 cut(s) 419
Hin1II CATG 2 cut(s) 155, 221
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 1 cut(s) 1153
HindII GTYRAC 1 cut(s) 1153
HinfI GANTC 9 cut(s) 88, 148, 238, 544, 826, 1160, 1184, 1429, 1484
HphI GGTGA 2 cut(s) 625, 1011
Hpy166II GTNNAC 5 cut(s) 292, 479, 1153, 1366, 1708
Hpy188III TCNNGA 8 cut(s) 721, 747, 911, 1049, 1225, 1352, 1398, 1747
Hpy8I GTNNAC 5 cut(s) 292, 479, 1153, 1366, 1708
Hpy99I CGWCG 1 cut(s) 1387
HpyAV CCTTC 4 cut(s) 315, 709, 954, 1744
HpyCH4III ACNGT 6 cut(s) 296, 385, 1192, 1391, 1519, 1609
HpyCH4IV ACGT 3 cut(s) 775, 1339, 1444
HpyF10VI GCNNNNNNNGC 6 cut(s) 370, 875, 1292, 1499, 1547, 1571
HpyF3I CTNAG 8 cut(s) 86, 398, 858, 979, 1296, 1461, 1641, 1719
HpySE526I ACGT 3 cut(s) 775, 1339, 1444
Hsp92II CATG 2 cut(s) 155, 221
HspAI GCGC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 5 cut(s) 55, 319, 907, 1400, 1714
LguI GCTCTTC 1 cut(s) 742
LmnI GCTCC 6 cut(s) 135, 361, 369, 382, 455, 607
Lsp1109I GCAGC 1 cut(s) 1279
LweI GCATC 7 cut(s) 106, 788, 844, 991, 1025, 1300, 1403
MabI ACCWGGT 1 cut(s) 883
MaeI CTAG 4 cut(s) 579, 846, 870, 951
MaeII ACGT 3 cut(s) 775, 1339, 1444
MaeIII GTNAC 6 cut(s) 436, 649, 946, 1456, 1609, 1618
MalI GATC 5 cut(s) 57, 321, 909, 1402, 1716
MboI GATC 5 cut(s) 55, 319, 907, 1400, 1714
MflI RGATCY 3 cut(s) 319, 1400, 1714
MhlI GDGCHC 3 cut(s) 366, 460, 470
MlsI TGGCCA 1 cut(s) 1286
MluI ACGCGT 1 cut(s) 440
MluNI TGGCCA 1 cut(s) 1286
MlyI GAGTC 4 cut(s) 97, 232, 1423, 1493
MmeI TCCRAC 2 cut(s) 71, 404
Mox20I TGGCCA 1 cut(s) 1286
MscI TGGCCA 1 cut(s) 1286
MseI TTAA 3 cut(s) 519, 918, 924
MslI CAYNNNNRTG 3 cut(s) 156, 840, 1024
Msp20I TGGCCA 1 cut(s) 1286
MspA1I CMGCKG 1 cut(s) 809
MspR9I CCNGG 4 cut(s) 20, 32, 134, 885
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 4 cut(s) 20, 32, 134, 885
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 6 cut(s) 370, 875, 1292, 1499, 1547, 1571
NdeII GATC 5 cut(s) 55, 319, 907, 1400, 1714
NlaIII CATG 2 cut(s) 155, 221
NlaIV GGNNCC 6 cut(s) 321, 378, 603, 889, 1080, 1716
NmuCI GTSAC 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 1024
PasI CCCWGGG 1 cut(s) 19
PceI AGGCCT 2 cut(s) 1630, 1754
PciSI GCTCTTC 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 5 cut(s) 148, 544, 826, 1160, 1184
PfoI TCCNGGA 2 cut(s) 30, 132
PkrI GCNGC 1 cut(s) 1294
PleI GAGTC 4 cut(s) 96, 232, 1423, 1492
PpsI GAGTC 4 cut(s) 96, 232, 1423, 1492
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 4 cut(s) 18, 30, 132, 883
PspFI CCCAGC 1 cut(s) 1313
PspGI CCWGG 4 cut(s) 18, 30, 132, 883
PspN4I GGNNCC 6 cut(s) 321, 378, 603, 889, 1080, 1716
PspPI GGNCC 4 cut(s) 4, 718, 1250, 1664
PstI CTGCAG 2 cut(s) 475, 505
PstNI CAGNNNCTG 2 cut(s) 414, 884
PsuI RGATCY 3 cut(s) 319, 1400, 1714
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 6 cut(s) 1342, 1513, 1537, 1561, 1585, 1606
RsaNI GTAC 6 cut(s) 1341, 1512, 1536, 1560, 1584, 1605
RseI CAYNNNNRTG 3 cut(s) 156, 840, 1024
SacI GAGCTC 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 742
SaqAI TTAA 3 cut(s) 519, 918, 924
SatI GCNGC 1 cut(s) 1293
Sau3AI GATC 5 cut(s) 55, 319, 907, 1400, 1714
Sau96I GGNCC 4 cut(s) 4, 718, 1250, 1664
SchI GAGTC 4 cut(s) 97, 232, 1423, 1493
ScrFI CCNGG 4 cut(s) 20, 32, 134, 885
SduI GDGCHC 3 cut(s) 366, 460, 470
SexAI ACCWGGT 1 cut(s) 883
SfaNI GCATC 7 cut(s) 106, 788, 844, 991, 1025, 1300, 1403
SfcI CTRYAG 3 cut(s) 471, 501, 804
SinI GGWCC 3 cut(s) 718, 1250, 1664
SmiMI CAYNNNNRTG 3 cut(s) 156, 840, 1024
SseBI AGGCCT 2 cut(s) 1630, 1754
SsiI CCGC 1 cut(s) 341
SspMI CTAG 4 cut(s) 579, 846, 870, 951
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 2 cut(s) 1630, 1754
StyD4I CCNGG 4 cut(s) 18, 30, 132, 883
TaaI ACNGT 6 cut(s) 296, 385, 1192, 1391, 1519, 1609
TaiI ACGT 3 cut(s) 778, 1342, 1447
TaqI TCGA 3 cut(s) 12, 39, 1163
TatI WGTACW 4 cut(s) 1535, 1559, 1583, 1604
TfiI GAWTC 5 cut(s) 148, 544, 826, 1160, 1184
Tru1I TTAA 3 cut(s) 519, 918, 924
Tru9I TTAA 3 cut(s) 519, 918, 924
TscAI CASTG 6 cut(s) 301, 475, 1294, 1524, 1621, 1656
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 1 cut(s) 1292
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 4 cut(s) 744, 999, 1005, 1455
TspGWI ACGGA 3 cut(s) 271, 1170, 1343
TspRI CASTG 6 cut(s) 301, 475, 1294, 1524, 1621, 1656
VpaK11BI GGWCC 3 cut(s) 718, 1250, 1664
XagI CCTNNNNNAGG 1 cut(s) 1722
XapI RAATTY 5 cut(s) 263, 344, 763, 793, 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 4 cut(s) 579, 846, 870, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.