Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Reverse (-)

33124850 .. 33126593

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1244500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTTCCAGAGAGACCGAATTTGAATTTTGACAAGCAGGTAGAAGATAACCCCAAGATTAAGGAAGAAATATCTGTTGATGGGGAATCCAACCAACCTTTCAGAGAAGATCCTTCAGTTGTCAAAAAAGTGATAAATGCTGGGATTATCCTTAAAGAGAAGAAACGTATTCCTGAAAAGGATGTGAACAAAGTGGATAAACCCACCAACGCTGCTTCAAGCTCACCGAAAAGAAGAAAAGTAGTGAAGACAGTGATTGATGATAGAGGAAGAGAAGTGACTGAAGTAATCTGGGAGGGTGAGGAAACAGAAGCAAAGAAAGCTGACAGTGATATAATCAAGACAGCCGACAGTGATATACTCAAGAAATCTGATAATAAAGCTGCCAGTGCTGTTAACAGGCCTCCTGCAGCTAAGAAGTCGGTGGGAAACACGGCTCCAACAAATGCAACAGGGAAAGTGGGAAACAAGAAAGGAGTAAGCAAGGATCCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

177

Amino Acids

19.32

Weight (kDa)

9.58

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AclWI	GGATC	3 cut(s)	104, 482, 495
AcsI	RAATTY	2 cut(s)	19, 25
AcuI	CTGAAG	2 cut(s)	99, 303
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	25, 219, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	222, 323, 383, 413
AluI	AGCT	4 cut(s)	222, 323, 383, 413
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	3 cut(s)	104, 482, 495
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	3 cut(s)	212, 383, 410
ApoI	RAATTY	2 cut(s)	19, 25
AsuHPI	GGTGA	2 cut(s)	216, 311
BamHI	GGATCC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	199, 370, 422
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	7
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	3 cut(s)	213, 384, 411
BlsI	GCNGC	3 cut(s)	214, 385, 412
BmiI	GGNNCC	3 cut(s)	6, 438, 489
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	199, 370, 422
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	109, 487
BspANI	GGCC	1 cut(s)	403
BspLI	GGNNCC	3 cut(s)	6, 438, 489
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	3 cut(s)	104, 482, 495
BspTNI	GGTCTC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	387
BssMI	GATC	2 cut(s)	109, 487
Bst4CI	ACNGT	3 cut(s)	253, 329, 353
Bst6I	CTCTTC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	414, 492
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	112, 490
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	109, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 389
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	199, 370, 422
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	109, 487
BstYI	RGATCY	2 cut(s)	109, 487
BsuRI	GGCC	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	4 cut(s)	258, 334, 358, 394
BveI	ACCTGC	1 cut(s)	28
CviJI	RGCY	7 cut(s)	222, 323, 347, 383, 403, 413, 437
CviKI_1	RGCY	7 cut(s)	222, 323, 347, 383, 403, 413, 437
DdeI	CTNAG	2 cut(s)	414, 492
DpnI	GATC	2 cut(s)	111, 489
DpnII	GATC	2 cut(s)	109, 487
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco147I	AGGCCT	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	99, 303
EcoNI	CCTNNNNNAGG	1 cut(s)	495
FaiI	YATR	2 cut(s)	335, 359
Fnu4HI	GCNGC	3 cut(s)	213, 384, 411
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	213, 384, 411
GluI	GCNGC	3 cut(s)	213, 384, 411
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	86
HpaI	GTTAAC	1 cut(s)	397
HphI	GGTGA	2 cut(s)	216, 311
Hpy166II	GTNNAC	2 cut(s)	187, 397
Hpy188I	TCNGA	2 cut(s)	104, 373
Hpy188III	TCNNGA	5 cut(s)	8, 173, 340, 364, 520
Hpy8I	GTNNAC	2 cut(s)	187, 397
HpyAV	CCTTC	2 cut(s)	123, 517
HpyCH4III	ACNGT	3 cut(s)	253, 329, 353
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	410, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 389
HpyF3I	CTNAG	2 cut(s)	414, 492
HpySE526I	ACGT	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	109, 487
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	9 cut(s)	21, 23, 126, 186, 277, 385, 400, 420, 438
Lsp1109I	GCAGC	3 cut(s)	199, 370, 422
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	111, 489
MboI	GATC	2 cut(s)	109, 487
MboII	GAAGA	8 cut(s)	56, 77, 119, 172, 246, 259, 282, 508
MflI	RGATCY	2 cut(s)	109, 487
MluCI	AATT	2 cut(s)	19, 25
MmeI	TCCRAC	2 cut(s)	114, 464
MnlI	CCTC	4 cut(s)	260, 289, 295, 414
MseI	TTAA	3 cut(s)	60, 153, 396
MwoI	GCNNNNNNNGC	2 cut(s)	320, 389
NdeII	GATC	2 cut(s)	109, 487
NlaIV	GGNNCC	3 cut(s)	6, 438, 489
NmuCI	GTSAC	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	214, 385, 412
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	6, 438, 489
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	109, 487
SaqAI	TTAA	3 cut(s)	60, 153, 396
SatI	GCNGC	3 cut(s)	213, 384, 411
Sau3AI	GATC	2 cut(s)	109, 487
SetI	ASST	8 cut(s)	42, 100, 169, 224, 325, 385, 415, 528
SfcI	CTRYAG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	19, 25
SseBI	AGGCCT	1 cut(s)	403
SspI	AATATT	1 cut(s)	505
StuI	AGGCCT	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	253, 329, 353
TaiI	ACGT	1 cut(s)	169
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	19, 25
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	60, 153, 396
Tru9I	TTAA	3 cut(s)	60, 153, 396
TscAI	CASTG	4 cut(s)	258, 334, 358, 394
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	212, 383, 410
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	4 cut(s)	258, 334, 358, 394
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	2 cut(s)	19, 25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.