Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Forward (+)

23928599 .. 23934461

Gene Structure 5863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCACCTATGCAATTATACATGTGATAACTATTCGCTATGCTTCTCCAGGTTCTGCGGCATTCTCAATTCCTTTGTTTTGCGTAATGTAGAGGAGGGAACACCATTGAGCACTGCAGGTCCACAACTGAAGACCAAATTAGCTTCAGAGCCATCAAAAATTAATTTAGCTCATCAAGATAGTGTGATTTTAAAACAGCAACAGAATAAAGGAGAACAATCTAGTCCGAAAGTTGGTTTGCCGGCTCCCAATGTGGTAAACGATGTCAAAAGTGAAAGCAATGGCATAGGAGTTACTCATCAGCCTAACAAACATCCTGCAGACAAAGAGAAAGTTGCTCCTCTTCCTGCTAACAAAAAGAAGGTCCAGAGTGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGTCGTGCATCTGTGAAATCCAAGTCAAATTCTACAGCCGAAAATAGTAATTTGATTCCTACGCATACTGGAGCAAGTGCAGAGGCTCAAATTTGTGCTAGAGAAGCAGAACCTGGTGTCATCAGCGACGATGATGATCAAGATGTTAATTTTAAGAGAGCTTCCGGTTCTGAAGTCACTAGGAAACGGAGGGTTGTCTTTGATTTCTCCGATGAAGACGAATGTGAAGATGCAGTCAATTTAGCATCACCAGAGTATCCAAAAGGAAAATCATGTCAAGAGCTCAAAGAAAGTAGCAAAACTTTGGTTCCACTTAAAACCAATTTGAACTTTGACGAGCAGGTAGAAGATAAACCAGAGGTCAAGGAAGAGATATCAGTTGACGGAAAATCTGACCCACCTTGCAGAGAAGATTCTACTGTTGTCAGCAAGGAAAGTAATTCTGGGATTATCCTGACAGAGAAAACAGACAGATCTGTTCCTGAAAAAGATGTGAACAAAATGGATAAGCTGGCCACTGCTGCTAAAACACAGATAGATGCTGGGATTATCCTAACTGAGAAAAAACGTAACTCTGTGCCTGAAAAAGATGTGAACAAAATGGATAAACTGACCAACGGTGCATCAAGATCTCCGCAAAGAAGAAAATTTTTGAAGACGCGGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAATATGGGAGGGCAAGGAGACAGAAGCAAAGAAAGCTGACAGCAGTGCAACCATGAAAGCTGACAGCAGTACAACAAAGAAAGCTGATAATACAGTTACCAGTGTTACGAACAGGCCTGCCGCAGCTCAGAAGTCAGTGGCGAACACTGGGCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTAAACAAGGATCCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

451

Amino Acids

48.94

Weight (kDa)

8.84

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	107, 748
AccII	CGCG	1 cut(s)	1078
AciI	CCGC	4 cut(s)	57, 1052, 1078, 1233
AclWI	GGATC	2 cut(s)	1307, 1320
AcoI	YGGCCR	1 cut(s)	930
AcsI	RAATTY	4 cut(s)	409, 445, 507, 1064
AcuI	CTGAAG	3 cut(s)	129, 149, 609
AfaI	GTAC	1 cut(s)	1183
AfiI	CCNNNNNNNGG	2 cut(s)	233, 1322
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	745, 1072, 1345
AjnI	CCWGG	2 cut(s)	47, 529
Alw21I	GWGCWC	2 cut(s)	113, 702
Alw26I	GTCTC	1 cut(s)	1124
AlwI	GGATC	2 cut(s)	1307, 1320
AlwNI	CAGNNNCTG	2 cut(s)	54, 530
AoxI	GGCC	3 cut(s)	930, 1226, 1262
ApeKI	GCWGC	2 cut(s)	938, 1235
ApoI	RAATTY	4 cut(s)	409, 445, 507, 1064
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	119, 364, 1262
AsuHPI	GGTGA	1 cut(s)	657
AvaII	GGWCC	2 cut(s)	119, 364
BaeI	ACNNNNGTAYC	2 cut(s)	656, 689
BalI	TGGCCA	1 cut(s)	932
BamHI	GGATCC	1 cut(s)	1312
BanII	GRGCYC	1 cut(s)	702
BbsI	GAAGAC	3 cut(s)	137, 639, 1079
Bbv12I	GWGCWC	2 cut(s)	113, 702
BbvI	GCAGC	2 cut(s)	925, 1247
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	49, 531
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	1124
BfaI	CTAG	3 cut(s)	222, 516, 597
BfmI	CTRYAG	3 cut(s)	114, 318, 450
BfuAI	ACCTGC	2 cut(s)	107, 748
BfuI	GTATCC	1 cut(s)	684
BglII	AGATCT	2 cut(s)	890, 1046
BisI	GCNGC	4 cut(s)	58, 939, 1233, 1236
BlsI	GCNGC	4 cut(s)	59, 940, 1234, 1237
Bme1390I	CCNGG	2 cut(s)	49, 531
Bme18I	GGWCC	2 cut(s)	119, 364
BmgT120I	GGNCC	3 cut(s)	119, 364, 1262
BmiI	GGNNCC	3 cut(s)	246, 726, 1314
BmrFI	CCNGG	2 cut(s)	49, 531
BmrI	ACTGGG	1 cut(s)	1269
BmsI	GCATC	5 cut(s)	434, 637, 671, 946, 1049
BmuI	ACTGGG	1 cut(s)	1269
BpiI	GAAGAC	3 cut(s)	137, 639, 1079
BpmI	CTGGAG	3 cut(s)	31, 414, 507
Bpu10I	CCTNAGC	1 cut(s)	1317
BsaBI	GATNNNNATC	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 1322
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	3 cut(s)	490, 1212, 1264
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	49, 531
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	233, 1322
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	966, 1098, 1253
BseNI	ACTGG	3 cut(s)	490, 1212, 1264
BseRI	GAGGAG	2 cut(s)	107, 330
BseXI	GCAGC	2 cut(s)	925, 1247
BseYI	CCCAGC	1 cut(s)	959
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	1078
BshFI	GGCC	3 cut(s)	932, 1228, 1264
BsiHKAI	GWGCWC	2 cut(s)	113, 702
BsiSI	CCGG	2 cut(s)	242, 582
BslI	CCNNNNNNNGG	2 cut(s)	233, 1322
BsmAI	GTCTC	1 cut(s)	1124
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	932, 1228, 1264
Bsp1286I	GDGCHC	2 cut(s)	113, 702
Bsp143I	GATC	4 cut(s)	553, 890, 1046, 1312
BspACI	CCGC	4 cut(s)	57, 1052, 1078, 1233
BspANI	GGCC	3 cut(s)	932, 1228, 1264
BspCNI	CTCAG	3 cut(s)	967, 1099, 1252
BspFNI	CGCG	1 cut(s)	1078
BspLI	GGNNCC	3 cut(s)	246, 726, 1314
BspMAI	CTGCAG	2 cut(s)	118, 322
BspMI	ACCTGC	2 cut(s)	107, 748
BspPI	GGATC	2 cut(s)	1307, 1320
BspQI	GCTCTTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	490, 1212, 1264
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	4 cut(s)	553, 890, 1046, 1312
Bst2UI	CCWGG	2 cut(s)	49, 531
Bst4CI	ACNGT	3 cut(s)	838, 1037, 1207
Bst6I	CTCTTC	4 cut(s)	348, 388, 780, 1090
BstC8I	GCNNGC	3 cut(s)	243, 930, 1230
BstDEI	CTNAG	4 cut(s)	975, 1107, 1239, 1317
BstENI	CCTNNNNNAGG	1 cut(s)	1320
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	1078
BstKTI	GATC	4 cut(s)	556, 893, 1049, 1315
BstMAI	GTCTC	1 cut(s)	1124
BstMBI	GATC	4 cut(s)	553, 890, 1046, 1312
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 938, 1145
BstNI	CCWGG	2 cut(s)	49, 531
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	47, 529
BstSFI	CTRYAG	3 cut(s)	114, 318, 450
BstUI	CGCG	1 cut(s)	1078
BstV1I	GCAGC	2 cut(s)	925, 1247
BstV2I	GAAGAC	3 cut(s)	137, 639, 1079
BstX2I	RGATCY	3 cut(s)	890, 1046, 1312
BstYI	RGATCY	3 cut(s)	890, 1046, 1312
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	932, 1228, 1264
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	3 cut(s)	111, 933, 1162
BtsIMutI	CAGTG	6 cut(s)	111, 933, 1162, 1219, 1254, 1257
BveI	ACCTGC	2 cut(s)	107, 748
Cac8I	GCNNGC	3 cut(s)	243, 930, 1230
CaiI	CAGNNNCTG	2 cut(s)	54, 530
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	119, 364, 1262
CseI	GACGC	1 cut(s)	1084
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	1182
CviAII	CATG	3 cut(s)	21, 690, 1165
CviQI	GTAC	1 cut(s)	1182
DdeI	CTNAG	4 cut(s)	975, 1107, 1239, 1317
DpnI	GATC	4 cut(s)	555, 892, 1048, 1314
DpnII	GATC	4 cut(s)	553, 890, 1046, 1312
DraI	TTTAAA	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	930
Eam1104I	CTCTTC	4 cut(s)	348, 388, 780, 1090
EarI	CTCTTC	4 cut(s)	348, 388, 780, 1090
Ecl136II	GAGCTC	1 cut(s)	700
Eco147I	AGGCCT	1 cut(s)	1228
Eco24I	GRGCYC	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	792
Eco47I	GGWCC	2 cut(s)	119, 364
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	3 cut(s)	129, 149, 609
EcoICRI	GAGCTC	1 cut(s)	700
EcoNI	CCTNNNNNAGG	1 cut(s)	1320
EcoRII	CCWGG	2 cut(s)	47, 529
EcoRV	GATATC	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	702
FaeI	CATG	3 cut(s)	24, 693, 1168
FaiI	YATR	9 cut(s)	10, 18, 22, 40, 287, 483, 691, 1117, 1166
FatI	CATG	3 cut(s)	20, 689, 1164
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	58, 939, 1233, 1236
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	4 cut(s)	58, 939, 1233, 1236
FspBI	CTAG	3 cut(s)	222, 516, 597
GluI	GCNGC	4 cut(s)	58, 939, 1233, 1236
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	3 cut(s)	31, 414, 507
HaeIII	GGCC	3 cut(s)	932, 1228, 1264
HapII	CCGG	2 cut(s)	242, 582
HgaI	GACGC	1 cut(s)	1084
Hin1II	CATG	3 cut(s)	24, 693, 1168
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	2 cut(s)	472, 830
HpaII	CCGG	2 cut(s)	242, 582
HphI	GGTGA	1 cut(s)	657
Hpy166II	GTNNAC	6 cut(s)	122, 259, 799, 913, 1012, 1306
Hpy188I	TCNGA	6 cut(s)	148, 228, 589, 628, 811, 1242
Hpy188III	TCNNGA	9 cut(s)	176, 367, 393, 557, 695, 871, 899, 1044, 1345
Hpy8I	GTNNAC	6 cut(s)	122, 259, 799, 913, 1012, 1306
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	355, 1342
HpyCH4III	ACNGT	3 cut(s)	838, 1037, 1207
HpyCH4IV	ACGT	2 cut(s)	985, 1090
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 938, 1145
HpyF3I	CTNAG	4 cut(s)	975, 1107, 1239, 1317
HpySE526I	ACGT	2 cut(s)	985, 1090
Hsp92II	CATG	3 cut(s)	24, 693, 1168
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	553, 890, 1046, 1312
LguI	GCTCTTC	1 cut(s)	388
LmnI	GCTCC	3 cut(s)	250, 343, 488
Lsp1109I	GCAGC	2 cut(s)	925, 1247
LweI	GCATC	5 cut(s)	434, 637, 671, 946, 1049
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	3 cut(s)	222, 516, 597
MaeII	ACGT	2 cut(s)	985, 1090
MaeIII	GTNAC	6 cut(s)	292, 592, 986, 1102, 1207, 1216
MalI	GATC	4 cut(s)	555, 892, 1048, 1314
MboI	GATC	4 cut(s)	553, 890, 1046, 1312
MflI	RGATCY	3 cut(s)	890, 1046, 1312
MhlI	GDGCHC	2 cut(s)	113, 702
MlsI	TGGCCA	1 cut(s)	932
MluNI	TGGCCA	1 cut(s)	932
Mox20I	TGGCCA	1 cut(s)	932
MroNI	GCCGGC	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	932
MseI	TTAA	5 cut(s)	162, 191, 564, 570, 732
Msp20I	TGGCCA	1 cut(s)	932
MspI	CCGG	2 cut(s)	242, 582
MspR9I	CCNGG	2 cut(s)	49, 531
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	2 cut(s)	49, 531
MvnI	CGCG	1 cut(s)	1078
MwoI	GCNNNNNNNGC	3 cut(s)	521, 938, 1145
NaeI	GCCGGC	1 cut(s)	243
NdeII	GATC	4 cut(s)	553, 890, 1046, 1312
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	24, 693, 1168
NlaIV	GGNNCC	3 cut(s)	246, 726, 1314
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	1228
PciI	ACATGT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	388
PctI	GAATGC	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	472, 830
PkrI	GCNGC	4 cut(s)	59, 940, 1234, 1237
PscI	ACATGT	1 cut(s)	20
PshBI	ATTAAT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	47, 529
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	2 cut(s)	47, 529
PspN4I	GGNNCC	3 cut(s)	246, 726, 1314
PspPI	GGNCC	3 cut(s)	119, 364, 1262
PstI	CTGCAG	2 cut(s)	118, 322
PstNI	CAGNNNCTG	2 cut(s)	54, 530
PsuI	RGATCY	3 cut(s)	890, 1046, 1312
RsaI	GTAC	1 cut(s)	1183
RsaNI	GTAC	1 cut(s)	1182
SacI	GAGCTC	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	388
SaqAI	TTAA	5 cut(s)	162, 191, 564, 570, 732
SatI	GCNGC	4 cut(s)	58, 939, 1233, 1236
Sau3AI	GATC	4 cut(s)	553, 890, 1046, 1312
Sau96I	GGNCC	3 cut(s)	119, 364, 1262
ScrFI	CCNGG	2 cut(s)	49, 531
SduI	GDGCHC	2 cut(s)	113, 702
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	5 cut(s)	434, 637, 671, 946, 1049
SfcI	CTRYAG	3 cut(s)	114, 318, 450
SinI	GGWCC	2 cut(s)	119, 364
SseBI	AGGCCT	1 cut(s)	1228
SsiI	CCGC	4 cut(s)	57, 1052, 1078, 1233
SspI	AATATT	1 cut(s)	1330
SspMI	CTAG	3 cut(s)	222, 516, 597
SstI	GAGCTC	1 cut(s)	702
StuI	AGGCCT	1 cut(s)	1228
StyD4I	CCNGG	2 cut(s)	47, 529
TaaI	ACNGT	3 cut(s)	838, 1037, 1207
TaiI	ACGT	2 cut(s)	988, 1093
TatI	WGTACW	1 cut(s)	1181
TauI	GCSGC	2 cut(s)	60, 1235
TfiI	GAWTC	2 cut(s)	472, 830
Tru1I	TTAA	5 cut(s)	162, 191, 564, 570, 732
Tru9I	TTAA	5 cut(s)	162, 191, 564, 570, 732
TscAI	CASTG	6 cut(s)	118, 940, 1162, 1219, 1254, 1264
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	938, 1235
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	5 cut(s)	390, 645, 1101, 1181, 1326
TspGWI	ACGGA	2 cut(s)	619, 816
TspRI	CASTG	6 cut(s)	118, 940, 1162, 1219, 1254, 1264
VpaK11BI	GGWCC	2 cut(s)	119, 364
VspI	ATTAAT	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	1320
XapI	RAATTY	4 cut(s)	409, 445, 507, 1064
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	3 cut(s)	222, 516, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.