Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Forward (+)

24176414 .. 24187280

Gene Structure 10867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG233000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGCCCTCCCCCTTTCTCGCTAATCCCACCTCTATCCCTCCTCCCAACCCCGCCGAGTCCTCCTCCGACGCCCCAAACGACGCCGTTCCCGCCTGCTCCTCCTCCTCCTCGCGCTGCTCGGAAATGTGGAACTATCTCTGGATCCCCTTCCTGATTTCCCTCTCCAAGGAGCTCACCTCCGCCAAGGCGCAGTCCACGCCGACGATTCTGCTCCCGAGTCAACTCGCTGGCTCCGACTCGTCGCAGAGGTGTACGGCGCTCGACCCCAAGCTCAATTACCGCCCGGTGATCGGTATTCTCAGCCATCCCGGCGACGGCGCCTCCGGTCGGCTCAGTAATGCTACCGGTACTTCCTACATCGCCGCCTCCTACGTCAAGTTCGTTGAATCCGCCGGGGCTCGCGTTATTCCGCTCATCTACAACGAGCCTTCTGATGTTCTCTTCCAGAAGCTCAATCTGGTCAATGGCGTGCTTTTCACCGGAGGCTGGGCTAAAAGTGGGAGGTACTATGAAGTTGCTGAGAAAATATTTAAGATGATTTTAAAGAAGAATGATGCTGGTGACCATTTTCCATTATATGCCATCTGCTTGGGTTTCGAACTTCTAACAATGATCATCAGCAAGAACAAGAAAATTCTGGAGTCATTCAGTGCTGCAGATATGGCTTCAACTTTACAATTTACCGAGACAAATATTGAGGGAACTGTGTTTCAAAGATTTCCACCTGATTTGCTTAGAAAGTTGAGTACAGATTGTATTGTCATGCAAAACCACCATTATGGTATCTCACCAGAGACGTTGGAAGAGAACCAAGATCTGTCAAGTTTTTTTAAGATCTTGACAACCAGTACTGATAAAGATGATAAGGTCTATGTCTCCACAGTACATGCATACCACTATCCTGTGACTGCCTTCCAATGGCATCCGGAGAAAAATGCTTTTGAATGGGGGTTACCGATGATTCCACACTCAGAAGATGCCATTCACGTGACTCAGCACATCGCAAACTTTTTGATCAGCGAGGCAAGGAAGTCATTAAACAGGCCACCTATTCAGGATGTCCTCGACAATCTCATCTACAATTACAGTCCAACATTTTGTGGGAAGGCAGGGAAGGGATACGATGAAGTTTACATCTTTAAACAACCTTCACTCGCACATTTGTTGCTCCAGGAGTTTGTGGAAAACCATGGAAACAGTTTGGAAGTGGTATATACTTTGTCTGGCCAGTTGAAGAACAATCCTGTGAGCTACCATGTAAGGCTCGTTTCAGGGCCTCAACTTGCAGAAGCAAAAGAAGAATTTGATGGCAACTGCTCCGTTGGGGTTTACAGTGTGCAACCTTGCATTCCAAAGGATCCAGCTACAATTTGGAATGCAGAATTTGTACAAGCAGAGGAGCTCCATACGCAGGTTCCAACAGTTGAAAATTGCTTGAGAGATAACAGGTTCTGTGGCATTCTCAATTCCTTTGTTTTGCGTAATGTAGAGGGAACACCATTGAGCACCGCAGGTCCACAACCGAAGACCAAATTAGCTGCAGAGCCATCAAAAATTAATTTAGCTCATCAAGATAGTGTGATTTTAAAACAGCAACAGAATAAAGGAGAACAATCTAGTCCGAAAGTTGGTTTGCCGGCTCCCAATGTGGTAAAAGATGTCAAAAGTGAAAGCAATGGCACAGGAGTTACTCATCAGCCTAACAAACATCCTGCAGACAAAGAGAAAGTTGCTCCTCTTCCTGCTAACAAAAAGAAGGTCCAGAGTGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGTCGTGCATCTGTGAAATCCAAGTCAAATTCTACAGCCGAAAATAGTAATTTGATTCCTATGCATACTGGAGCAAGTGCCGAGGCTCAAATTTGTGCTAGAGAAGCAGAATCTGGTGTCATCAGCGACGATGATGATCAAGATGTTAATTTTAAGAGAACTTCCAGTTCTGAAGTCACTAGGAAACGGAGGGTTGTCTTTGATTTCTCCGATGAAGATGAATGTGAAGATGCAGTCAATTTAGCATCACCAGAGTATCCAAAAGGAAAATCATTTCAAGAGCTCAAAGAAAGTAGCAAAACTTTGGTTCCACATAAAACCAATTTGAACTTTGACGAGCAGGTAGAAGATAAACCAGAGGTCAAGGAAGAGATATCAGTTGACGGAAAATCTGACCCACCTTGCAGAGAAGATTCTACCGTTGTCAGCAAGGAAAGGAATTCTGGGATTATCCTGACAGAGAAAACAGACAGATCTGTTCCTGAAAAAGATGTGAACAAAATGGATAAGCTGGCCACTGCTGCTAAAACACAGATAGATGCTGGGATTATCCTAACTGAGAAAAAACGTAACTCTGTTCCTGAAAAAAATGTGAACAAAATGGATAAACCGACCAACGGTGCATCAAGATCTCCTCAAAGAAGAAAAATTTTGAAGACGCAGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAATATGGGAGGGCAAGGAGACAGAAGCAAAGAAAGCTGACAGCAGTGCAACAATGAAAGCTGACAGCAGTACAACAAAGAAAGCGGATAATACAGTTACCAGTGTTACGAACAGGCCTGCCGCAGCTCAGAAGTCAGTGGCGAACACTGGTCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTTAACAAGGATCCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006508 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034722 GO:0042558 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044281 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046900 GO:0051186 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01523 map00790 map01523

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

916

Amino Acids

100.4

Weight (kDa)

6.85

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	95 - 310	4.4e-13	Peptidase C26
GATase	PF00117	128 - 314	8.5e-10	Glutamine amidotransferase class-I
CDC27	PF09507	413 - 721	5.5e-07	DNA polymerase subunit Cdc27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	1402, 1502, 2143
AccB1I	GGYRCC	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	412
AccII	CGCG	2 cut(s)	112, 402
AccIII	TCCGGA	1 cut(s)	925
AclWI	GGATC	6 cut(s)	136, 149, 1352, 1365, 2702, 2715
AcoI	YGGCCR	2 cut(s)	1225, 2325
AcsI	RAATTY	8 cut(s)	633, 1301, 1382, 1804, 1840, 1902, 2251, 2460
AcuI	CTGAAG	1 cut(s)	2004
AcvI	CACGTG	1 cut(s)	988
AcyI	GRCGYC	3 cut(s)	69, 81, 318
AfaI	GTAC	8 cut(s)	253, 349, 506, 748, 850, 885, 1389, 2578
AgeI	ACCGGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	1170
Alw21I	GWGCWC	4 cut(s)	174, 1404, 1508, 2097
Alw26I	GTCTC	4 cut(s)	680, 788, 880, 2519
AlwI	GGATC	6 cut(s)	136, 149, 1352, 1365, 2702, 2715
AlwNI	CAGNNNCTG	2 cut(s)	1452, 1925
Ama87I	CYCGRG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	925
AoxI	GGCC	5 cut(s)	1043, 1225, 1274, 2325, 2621
ApeKI	GCWGC	5 cut(s)	114, 653, 1538, 2333, 2630
ApoI	RAATTY	8 cut(s)	633, 1301, 1382, 1804, 1840, 1902, 2251, 2460
ArsI	GACNNNNNNTTYG	2 cut(s)	1743, 1775
AseI	ATTAAT	1 cut(s)	1557
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	4 cut(s)	114, 190, 259, 320
AspS9I	GGNCC	4 cut(s)	1274, 1514, 1759, 2657
AsuC2I	CCSGG	3 cut(s)	284, 309, 394
AsuHPI	GGTGA	6 cut(s)	166, 298, 469, 572, 780, 2052
AsuII	TTCGAA	1 cut(s)	597
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	3 cut(s)	1514, 1759, 2657
BaeI	ACNNNNGTAYC	2 cut(s)	2051, 2084
BalI	TGGCCA	2 cut(s)	1227, 2327
BamHI	GGATCC	3 cut(s)	141, 1357, 2707
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	4 cut(s)	174, 400, 1404, 2097
BbrPI	CACGTG	1 cut(s)	988
BbsI	GAAGAC	2 cut(s)	1532, 2474
Bbv12I	GWGCWC	4 cut(s)	174, 1404, 1508, 2097
BbvI	GCAGC	5 cut(s)	101, 640, 1525, 2320, 2642
BccI	CCATC	4 cut(s)	312, 590, 1301, 1555
BceAI	ACGGC	3 cut(s)	68, 270, 331
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	1172
BciVI	GTATCC	2 cut(s)	1112, 2079
BclI	TGATCA	3 cut(s)	612, 1014, 1948
BcnI	CCSGG	3 cut(s)	284, 309, 394
BcoDI	GTCTC	4 cut(s)	680, 788, 880, 2519
BfaI	CTAG	3 cut(s)	1617, 1911, 1992
BfmI	CTRYAG	4 cut(s)	654, 1539, 1713, 1845
BfoI	RGCGCY	2 cut(s)	260, 321
BfuAI	ACCTGC	3 cut(s)	1402, 1502, 2143
BfuI	GTATCC	2 cut(s)	1112, 2079
BglI	GCCNNNNNGGC	1 cut(s)	309
BglII	AGATCT	4 cut(s)	814, 834, 2285, 2441
BisI	GCNGC	7 cut(s)	115, 363, 654, 1539, 2334, 2628, 2631
BlsI	GCNGC	7 cut(s)	116, 364, 655, 1540, 2335, 2629, 2632
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	4 cut(s)	284, 309, 394, 1172
Bme18I	GGWCC	3 cut(s)	1514, 1759, 2657
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	1274, 1514, 1759, 2657
BmiI	GGNNCC	8 cut(s)	143, 232, 319, 1359, 1416, 1641, 2121, 2709
BmrFI	CCNGG	4 cut(s)	284, 309, 394, 1172
BmsI	GCATC	8 cut(s)	544, 931, 967, 1829, 2032, 2066, 2341, 2444
BpiI	GAAGAC	2 cut(s)	1532, 2474
BplI	GAGNNNNNCTC	4 cut(s)	47, 79, 161, 193
BpmI	CTGGAG	4 cut(s)	659, 1154, 1809, 1902
Bpu10I	CCTNAGC	1 cut(s)	2712
Bpu14I	TTCGAA	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	1456
BpuMI	CCSGG	3 cut(s)	284, 309, 394
BsaAI	YACGTR	1 cut(s)	988
BsaBI	GATNNNNATC	1 cut(s)	1947
BsaHI	GRCGYC	3 cut(s)	69, 81, 318
BsaJI	CCNNGG	5 cut(s)	165, 183, 393, 1189, 1893
BsaWI	WCCGGW	4 cut(s)	323, 344, 479, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bse118I	RCCGGY	2 cut(s)	344, 1636
Bse1I	ACTGG	6 cut(s)	846, 1228, 1885, 1977, 2607, 2659
Bse3DI	GCAATG	1 cut(s)	1681
Bse8I	GATNNNNATC	1 cut(s)	1947
BseAI	TCCGGA	1 cut(s)	925
BseBI	CCWGG	1 cut(s)	1172
BseDI	CCNNGG	5 cut(s)	165, 183, 393, 1189, 1893
BseGI	GGATG	4 cut(s)	304, 922, 1063, 1708
BseJI	GATNNNNATC	1 cut(s)	1947
BseMI	GCAATG	1 cut(s)	1681
BseMII	CTCAG	8 cut(s)	313, 346, 510, 984, 1007, 2361, 2493, 2648
BseNI	ACTGG	6 cut(s)	846, 1228, 1885, 1977, 2607, 2659
BseRI	GAGGAG	9 cut(s)	30, 52, 88, 91, 94, 97, 1412, 1725, 2436
BseXI	GCAGC	5 cut(s)	101, 640, 1525, 2320, 2642
BseYI	CCCAGC	2 cut(s)	486, 2354
Bsh1236I	CGCG	2 cut(s)	112, 402
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	5 cut(s)	1045, 1227, 1276, 2327, 2623
BshNI	GGYRCC	1 cut(s)	317
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	4 cut(s)	174, 1404, 1508, 2097
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	8 cut(s)	284, 309, 324, 345, 393, 480, 926, 1637
BsmAI	GTCTC	4 cut(s)	680, 788, 880, 2519
BsmBI	CGTCTC	1 cut(s)	788
BsmI	GAATGC	3 cut(s)	1347, 1381, 1458
BsnI	GGCC	5 cut(s)	1045, 1227, 1276, 2327, 2623
BsoBI	CYCGRG	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	5 cut(s)	174, 400, 1404, 1508, 2097
Bsp13I	TCCGGA	1 cut(s)	925
Bsp1407I	TGTACA	1 cut(s)	1387
Bsp19I	CCATGG	1 cut(s)	1189
BspANI	GGCC	5 cut(s)	1045, 1227, 1276, 2327, 2623
BspCNI	CTCAG	8 cut(s)	312, 345, 511, 983, 1006, 2362, 2494, 2647
BspEI	TCCGGA	1 cut(s)	925
BspFNI	CGCG	2 cut(s)	112, 402
BspLI	GGNNCC	8 cut(s)	143, 232, 319, 1359, 1416, 1641, 2121, 2709
BspMAI	CTGCAG	3 cut(s)	658, 1543, 1717
BspMI	ACCTGC	3 cut(s)	1402, 1502, 2143
BspPI	GGATC	6 cut(s)	136, 149, 1352, 1365, 2702, 2715
BspQI	GCTCTTC	1 cut(s)	1783
BspT104I	TTCGAA	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	1681
BsrFI	RCCGGY	2 cut(s)	344, 1636
BsrGI	TGTACA	1 cut(s)	1387
BsrI	ACTGG	6 cut(s)	846, 1228, 1885, 1977, 2607, 2659
BssAI	RCCGGY	2 cut(s)	344, 1636
BssECI	CCNNGG	5 cut(s)	165, 183, 393, 1189, 1893
BssNI	GRCGYC	3 cut(s)	69, 81, 318
BssT1I	CCWWGG	3 cut(s)	165, 183, 1189
Bst2UI	CCWGG	1 cut(s)	1172
Bst4CI	ACNGT	9 cut(s)	706, 883, 1088, 1199, 1334, 1423, 2233, 2432, 2602
Bst6I	CTCTTC	6 cut(s)	446, 798, 1743, 1783, 2175, 2485
BstACI	GRCGYC	3 cut(s)	69, 81, 318
BstAUI	TGTACA	1 cut(s)	1387
BstBAI	YACGTR	1 cut(s)	988
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	7 cut(s)	94, 229, 400, 470, 1638, 2325, 2625
BstDSI	CCRYGG	1 cut(s)	1189
BstEII	GGTNACC	2 cut(s)	560, 951
BstENI	CCTNNNNNAGG	2 cut(s)	164, 2715
BstF5I	GGATG	4 cut(s)	304, 922, 1063, 1708
BstFNI	CGCG	2 cut(s)	112, 402
BstH2I	RGCGCY	2 cut(s)	260, 321
BstHHI	GCGC	4 cut(s)	114, 190, 259, 320
BstMAI	GTCTC	4 cut(s)	680, 788, 880, 2519
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 196, 309, 662, 1408, 1916, 2333, 2540
BstNI	CCWGG	1 cut(s)	1172
BstNSI	RCATGY	1 cut(s)	890
BstPI	GGTNACC	2 cut(s)	560, 951
BstSCI	CCNGG	4 cut(s)	282, 307, 392, 1170
BstSFI	CTRYAG	4 cut(s)	654, 1539, 1713, 1845
BstUI	CGCG	2 cut(s)	112, 402
BstV1I	GCAGC	5 cut(s)	101, 640, 1525, 2320, 2642
BstV2I	GAAGAC	2 cut(s)	1532, 2474
BstX2I	RGATCY	7 cut(s)	141, 814, 834, 1357, 2285, 2441, 2707
BstXI	CCANNNNNNTGG	2 cut(s)	589, 779
BstYI	RGATCY	7 cut(s)	141, 814, 834, 1357, 2285, 2441, 2707
BsuI	GTATCC	2 cut(s)	1112, 2079
BsuRI	GGCC	5 cut(s)	1045, 1227, 1276, 2327, 2623
BtgI	CCRYGG	1 cut(s)	1189
BtgZI	GCGATG	2 cut(s)	343, 985
BtsCI	GGATG	4 cut(s)	304, 922, 1063, 1708
BtsI	GCAGTG	2 cut(s)	2328, 2557
BtsIMutI	CAGTG	7 cut(s)	655, 1339, 2328, 2557, 2614, 2649, 2652
BveI	ACCTGC	3 cut(s)	1402, 1502, 2143
Cac8I	GCNNGC	7 cut(s)	94, 229, 400, 470, 1638, 2325, 2625
CaiI	CAGNNNCTG	2 cut(s)	1452, 1925
CfoI	GCGC	4 cut(s)	114, 190, 259, 320
Cfr10I	RCCGGY	2 cut(s)	344, 1636
Cfr13I	GGNCC	4 cut(s)	1274, 1514, 1759, 2657
CseI	GACGC	3 cut(s)	77, 89, 2479
Csp6I	GTAC	8 cut(s)	252, 348, 505, 747, 849, 884, 1388, 2577
CspAI	ACCGGT	1 cut(s)	344
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	4 cut(s)	763, 887, 1190, 1256
CviQI	GTAC	8 cut(s)	252, 348, 505, 747, 849, 884, 1388, 2577
DinI	GGCGCC	1 cut(s)	319
DraI	TTTAAA	3 cut(s)	543, 1141, 1587
EaeI	YGGCCR	2 cut(s)	1225, 2325
Eam1104I	CTCTTC	6 cut(s)	446, 798, 1743, 1783, 2175, 2485
EarI	CTCTTC	6 cut(s)	446, 798, 1743, 1783, 2175, 2485
EciI	GGCGGA	2 cut(s)	169, 379
Ecl136II	GAGCTC	3 cut(s)	172, 1402, 2095
Eco130I	CCWWGG	3 cut(s)	165, 183, 1189
Eco147I	AGGCCT	1 cut(s)	2623
Eco24I	GRGCYC	4 cut(s)	174, 400, 1404, 2097
Eco32I	GATATC	1 cut(s)	2187
Eco47I	GGWCC	3 cut(s)	1514, 1759, 2657
Eco53kI	GAGCTC	3 cut(s)	172, 1402, 2095
Eco57I	CTGAAG	1 cut(s)	2004
Eco72I	CACGTG	1 cut(s)	988
Eco88I	CYCGRG	1 cut(s)	214
Eco91I	GGTNACC	2 cut(s)	560, 951
EcoICRI	GAGCTC	3 cut(s)	172, 1402, 2095
EcoNI	CCTNNNNNAGG	2 cut(s)	164, 2715
EcoO109I	RGGNCCY	1 cut(s)	1274
EcoO65I	GGTNACC	2 cut(s)	560, 951
EcoRI	GAATTC	1 cut(s)	2251
EcoRII	CCWGG	1 cut(s)	1170
EcoRV	GATATC	1 cut(s)	2187
EcoT14I	CCWWGG	3 cut(s)	165, 183, 1189
EcoT22I	ATGCAT	2 cut(s)	892, 1878
EcoT38I	GRGCYC	4 cut(s)	174, 400, 1404, 2097
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	3 cut(s)	165, 183, 1189
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	4 cut(s)	766, 890, 1193, 1259
FatI	CATG	4 cut(s)	762, 886, 1189, 1255
FauI	CCCGC	2 cut(s)	58, 97
FbaI	TGATCA	3 cut(s)	612, 1014, 1948
Fnu4HI	GCNGC	7 cut(s)	115, 363, 654, 1539, 2334, 2628, 2631
FokI	GGATG	4 cut(s)	291, 909, 1070, 1695
FriOI	GRGCYC	4 cut(s)	174, 400, 1404, 2097
Fsp4HI	GCNGC	7 cut(s)	115, 363, 654, 1539, 2334, 2628, 2631
FspBI	CTAG	3 cut(s)	1617, 1911, 1992
GlaI	GCGC	4 cut(s)	113, 189, 258, 319
GluI	GCNGC	7 cut(s)	115, 363, 654, 1539, 2334, 2628, 2631
GsaI	CCCAGC	2 cut(s)	490, 2358
GsuI	CTGGAG	4 cut(s)	659, 1154, 1809, 1902
HaeII	RGCGCY	2 cut(s)	260, 321
HaeIII	GGCC	5 cut(s)	1045, 1227, 1276, 2327, 2623
HapII	CCGG	8 cut(s)	284, 309, 324, 345, 393, 480, 926, 1637
HgaI	GACGC	3 cut(s)	77, 89, 2479
HhaI	GCGC	4 cut(s)	114, 190, 259, 320
Hin1I	GRCGYC	3 cut(s)	69, 81, 318
Hin1II	CATG	4 cut(s)	766, 890, 1193, 1259
Hin6I	GCGC	4 cut(s)	112, 188, 257, 318
HinP1I	GCGC	4 cut(s)	112, 188, 257, 318
HincII	GTYRAC	3 cut(s)	221, 2194, 2701
HindII	GTYRAC	3 cut(s)	221, 2194, 2701
HpaI	GTTAAC	1 cut(s)	2701
HpaII	CCGG	8 cut(s)	284, 309, 324, 345, 393, 480, 926, 1637
HphI	GGTGA	6 cut(s)	166, 298, 469, 572, 780, 2052
Hpy99I	CGWCG	6 cut(s)	71, 83, 205, 244, 317, 1943
HpyAV	CCTTC	8 cut(s)	157, 438, 922, 1099, 1108, 1158, 1750, 2737
HpyCH4III	ACNGT	9 cut(s)	706, 883, 1088, 1199, 1334, 1423, 2233, 2432, 2602
HpyCH4IV	ACGT	5 cut(s)	372, 797, 987, 2380, 2485
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 196, 309, 662, 1408, 1916, 2333, 2540
HpySE526I	ACGT	5 cut(s)	372, 797, 987, 2380, 2485
Hsp92I	GRCGYC	3 cut(s)	69, 81, 318
Hsp92II	CATG	4 cut(s)	766, 890, 1193, 1259
HspAI	GCGC	4 cut(s)	112, 188, 257, 318
KasI	GGCGCC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	925
KroI	GCCGGC	1 cut(s)	1636
KroNI	GCCGGC	1 cut(s)	1638
Ksp22I	TGATCA	3 cut(s)	612, 1014, 1948
KspAI	GTTAAC	1 cut(s)	2701
LguI	GCTCTTC	1 cut(s)	1783
Lsp1109I	GCAGC	5 cut(s)	101, 640, 1525, 2320, 2642
LweI	GCATC	8 cut(s)	544, 931, 967, 1829, 2032, 2066, 2341, 2444
MaeI	CTAG	3 cut(s)	1617, 1911, 1992
MaeII	ACGT	5 cut(s)	372, 797, 987, 2380, 2485
MbiI	CCGCTC	1 cut(s)	412
MflI	RGATCY	7 cut(s)	141, 814, 834, 1357, 2285, 2441, 2707
MhlI	GDGCHC	5 cut(s)	174, 400, 1404, 1508, 2097
MlsI	TGGCCA	2 cut(s)	1227, 2327
MluNI	TGGCCA	2 cut(s)	1227, 2327
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	5 cut(s)	65, 226, 230, 650, 985
MmeI	TCCRAC	5 cut(s)	90, 258, 780, 1115, 1442
Mox20I	TGGCCA	2 cut(s)	1227, 2327
Mph1103I	ATGCAT	2 cut(s)	892, 1878
MroI	TCCGGA	1 cut(s)	925
MroNI	GCCGGC	1 cut(s)	1636
MscI	TGGCCA	2 cut(s)	1227, 2327
MslI	CAYNNNNRTG	2 cut(s)	777, 986
Msp20I	TGGCCA	2 cut(s)	1227, 2327
MspI	CCGG	8 cut(s)	284, 309, 324, 345, 393, 480, 926, 1637
MspR9I	CCNGG	4 cut(s)	284, 309, 394, 1172
Mva1269I	GAATGC	3 cut(s)	1347, 1381, 1458
MvaI	CCWGG	1 cut(s)	1172
MvnI	CGCG	2 cut(s)	112, 402
MwoI	GCNNNNNNNGC	8 cut(s)	89, 196, 309, 662, 1408, 1916, 2333, 2540
NaeI	GCCGGC	1 cut(s)	1638
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	3 cut(s)	284, 309, 394
NcoI	CCATGG	1 cut(s)	1189
NgoMIV	GCCGGC	1 cut(s)	1636
NlaIII	CATG	4 cut(s)	766, 890, 1193, 1259
NlaIV	GGNNCC	8 cut(s)	143, 232, 319, 1359, 1416, 1641, 2121, 2709
NmeAIII	GCCGAG	2 cut(s)	79, 1918
NmuCI	GTSAC	4 cut(s)	560, 904, 988, 1987
NsiI	ATGCAT	2 cut(s)	892, 1878
NspI	RCATGY	1 cut(s)	890
NspV	TTCGAA	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	2623
PciSI	GCTCTTC	1 cut(s)	1783
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 231, 378
PctI	GAATGC	3 cut(s)	1347, 1381, 1458
PdiI	GCCGGC	1 cut(s)	1638
PfeI	GAWTC	6 cut(s)	205, 386, 961, 1867, 1922, 2225
PfoI	TCCNGGA	1 cut(s)	1170
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	7 cut(s)	116, 364, 655, 1540, 2335, 2629, 2632
PleI	GAGTC	5 cut(s)	64, 225, 230, 649, 985
PluTI	GGCGCC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	988
PmlI	CACGTG	1 cut(s)	988
PpsI	GAGTC	5 cut(s)	64, 225, 230, 649, 985
Ppu21I	YACGTR	1 cut(s)	988
PshBI	ATTAAT	1 cut(s)	1557
Psp124BI	GAGCTC	3 cut(s)	174, 1404, 2097
Psp6I	CCWGG	1 cut(s)	1170
PspCI	CACGTG	1 cut(s)	988
PspEI	GGTNACC	2 cut(s)	560, 951
PspFI	CCCAGC	2 cut(s)	486, 2354
PspGI	CCWGG	1 cut(s)	1170
PspN4I	GGNNCC	8 cut(s)	143, 232, 319, 1359, 1416, 1641, 2121, 2709
PspPI	GGNCC	4 cut(s)	1274, 1514, 1759, 2657
PstI	CTGCAG	3 cut(s)	658, 1543, 1717
PstNI	CAGNNNCTG	2 cut(s)	1452, 1925
PsuI	RGATCY	7 cut(s)	141, 814, 834, 1357, 2285, 2441, 2707
RsaI	GTAC	8 cut(s)	253, 349, 506, 748, 850, 885, 1389, 2578
RsaNI	GTAC	8 cut(s)	252, 348, 505, 747, 849, 884, 1388, 2577
RseI	CAYNNNNRTG	2 cut(s)	777, 986
SacI	GAGCTC	3 cut(s)	174, 1404, 2097
SapI	GCTCTTC	1 cut(s)	1783
SatI	GCNGC	7 cut(s)	115, 363, 654, 1539, 2334, 2628, 2631
Sau96I	GGNCC	4 cut(s)	1274, 1514, 1759, 2657
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	5 cut(s)	65, 226, 230, 650, 985
ScrFI	CCNGG	4 cut(s)	284, 309, 394, 1172
SduI	GDGCHC	5 cut(s)	174, 400, 1404, 1508, 2097
SfaNI	GCATC	8 cut(s)	544, 931, 967, 1829, 2032, 2066, 2341, 2444
SfcI	CTRYAG	4 cut(s)	654, 1539, 1713, 1845
SfoI	GGCGCC	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	3 cut(s)	1514, 1759, 2657
SmiMI	CAYNNNNRTG	2 cut(s)	777, 986
SmlI	CTYRAG	1 cut(s)	1435
SmoI	CTYRAG	1 cut(s)	1435
SseBI	AGGCCT	1 cut(s)	2623
SspDI	GGCGCC	1 cut(s)	317
SspI	AATATT	3 cut(s)	528, 694, 2725
SspMI	CTAG	3 cut(s)	1617, 1911, 1992
SstI	GAGCTC	3 cut(s)	174, 1404, 2097
StuI	AGGCCT	1 cut(s)	2623
StyD4I	CCNGG	4 cut(s)	282, 307, 392, 1170
StyI	CCWWGG	3 cut(s)	165, 183, 1189
TaaI	ACNGT	9 cut(s)	706, 883, 1088, 1199, 1334, 1423, 2233, 2432, 2602
TaiI	ACGT	5 cut(s)	375, 800, 990, 2383, 2488
TaqI	TCGA	3 cut(s)	261, 597, 1065
TatI	WGTACW	5 cut(s)	746, 848, 883, 1387, 2576
TauI	GCSGC	2 cut(s)	365, 2630
TfiI	GAWTC	6 cut(s)	205, 386, 961, 1867, 1922, 2225
TscAI	CASTG	7 cut(s)	655, 1339, 2335, 2557, 2614, 2649, 2659
TseFI	GTSAC	4 cut(s)	560, 904, 988, 1987
TseI	GCWGC	5 cut(s)	114, 653, 1538, 2333, 2630
Tsp45I	GTSAC	4 cut(s)	560, 904, 988, 1987
TspDTI	ATGAA	8 cut(s)	525, 1140, 1785, 2040, 2046, 2496, 2576, 2721
TspGWI	ACGGA	3 cut(s)	1309, 2014, 2211
TspRI	CASTG	7 cut(s)	655, 1339, 2335, 2557, 2614, 2649, 2659
VpaK11BI	GGWCC	3 cut(s)	1514, 1759, 2657
VspI	ATTAAT	1 cut(s)	1557
XagI	CCTNNNNNAGG	2 cut(s)	164, 2715
XapI	RAATTY	8 cut(s)	633, 1301, 1382, 1804, 1840, 1902, 2251, 2460
XceI	RCATGY	1 cut(s)	890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1368
XspI	CTAG	3 cut(s)	1617, 1911, 1992
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	2 cut(s)	892, 1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.