Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Forward (+)

23994620 .. 23998743

Gene Structure 4124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATAAGCTGGCCACTGCTGCTAAAACACAGATAGATGCTGGGATTATCCTAACTGAGAAAAAACGTAACTCTGTGCCTGAAAAAGATGTGAACAAAATGGATAAACCGACCAACGGTGCATCAAGATCTCCTCAAAGAAGAAAAATTTTGAAGACGCGGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAATATGGGAGGGCAAGGAGACAGAAGCAAAGAAAGCTGACAGCAGTGCAACAATGAAAGCTGACAGCAGTGCAACAAAGAAAGCTGATAATACGGTTACCAGTGTTACGAACAGGCCTGCCGCAGCTCAGAAGTCAGTGGCGAACACTGGGCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTAAACAAGGATCCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

145

Amino Acids

15.7

Weight (kDa)

10.14

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	160, 315
AclWI	GGATC	2 cut(s)	389, 402
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	116, 404
AgsI	TTSAA	2 cut(s)	154, 427
AluBI	AGCT	5 cut(s)	10, 230, 254, 278, 320
AluI	AGCT	5 cut(s)	10, 230, 254, 278, 320
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	389, 402
AoxI	GGCC	3 cut(s)	12, 308, 344
ApeKI	GCWGC	2 cut(s)	20, 317
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	7, 329
BcoDI	GTCTC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	3 cut(s)	21, 315, 318
BlsI	GCNGC	3 cut(s)	22, 316, 319
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	28, 131
BmuI	ACTGGG	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 404
Bse1I	ACTGG	2 cut(s)	294, 346
BseLI	CCNNNNNNNGG	2 cut(s)	116, 404
BseMII	CTCAG	3 cut(s)	48, 180, 335
BseNI	ACTGG	2 cut(s)	294, 346
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	7, 329
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	14, 310, 346
BslI	CCNNNNNNNGG	2 cut(s)	116, 404
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	14, 310, 346
Bsp143I	GATC	2 cut(s)	128, 394
BspACI	CCGC	2 cut(s)	160, 315
BspANI	GGCC	3 cut(s)	14, 310, 346
BspCNI	CTCAG	3 cut(s)	49, 181, 334
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	389, 402
BsrI	ACTGG	2 cut(s)	294, 346
BssMI	GATC	2 cut(s)	128, 394
Bst4CI	ACNGT	2 cut(s)	119, 289
Bst6I	CTCTTC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	12, 312
BstDEI	CTNAG	4 cut(s)	57, 189, 321, 399
BstEII	GGTNACC	1 cut(s)	289
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	2 cut(s)	131, 397
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	128, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 227
BstPI	GGTNACC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	7, 329
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	128, 394
BstYI	RGATCY	2 cut(s)	128, 394
BsuRI	GGCC	3 cut(s)	14, 310, 346
BtsI	GCAGTG	3 cut(s)	15, 244, 268
BtsIMutI	CAGTG	6 cut(s)	15, 244, 268, 301, 336, 339
Cac8I	GCNNGC	2 cut(s)	12, 312
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	8 cut(s)	10, 14, 230, 254, 278, 310, 320, 346
CviKI_1	RGCY	8 cut(s)	10, 14, 230, 254, 278, 310, 320, 346
DdeI	CTNAG	4 cut(s)	57, 189, 321, 399
DpnI	GATC	2 cut(s)	130, 396
DpnII	GATC	2 cut(s)	128, 394
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	289
FaiI	YATR	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	21, 315, 318
Fsp4HI	GCNGC	3 cut(s)	21, 315, 318
GluI	GCNGC	3 cut(s)	21, 315, 318
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	14, 310, 346
HgaI	GACGC	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	94, 388
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	126, 427
Hpy8I	GTNNAC	2 cut(s)	94, 388
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	119, 289
HpyCH4IV	ACGT	2 cut(s)	67, 172
HpyCH4V	TGCA	3 cut(s)	122, 242, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 227
HpyF3I	CTNAG	4 cut(s)	57, 189, 321, 399
HpySE526I	ACGT	2 cut(s)	67, 172
Kzo9I	GATC	2 cut(s)	128, 394
LpnPI	CCDG	7 cut(s)	27, 93, 292, 307, 324, 327, 354
Lsp1109I	GCAGC	2 cut(s)	7, 329
LweI	GCATC	2 cut(s)	28, 131
MaeII	ACGT	2 cut(s)	67, 172
MaeIII	GTNAC	4 cut(s)	68, 184, 289, 298
MalI	GATC	2 cut(s)	130, 396
MboI	GATC	2 cut(s)	128, 394
MboII	GAAGA	4 cut(s)	153, 166, 189, 415
MflI	RGATCY	2 cut(s)	128, 394
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	14
MnlI	CCTC	4 cut(s)	144, 184, 196, 365
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	20, 227
NdeII	GATC	2 cut(s)	128, 394
NlaIV	GGNNCC	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	22, 316, 319
PspEI	GGTNACC	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	128, 394
SatI	GCNGC	3 cut(s)	21, 315, 318
Sau3AI	GATC	2 cut(s)	128, 394
Sau96I	GGNCC	1 cut(s)	344
SetI	ASST	9 cut(s)	12, 70, 175, 195, 232, 256, 280, 322, 435
SfaNI	GCATC	2 cut(s)	28, 131
Sse9I	AATT	1 cut(s)	147
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	160, 315
SspI	AATATT	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	119, 289
TaiI	ACGT	2 cut(s)	70, 175
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	317
TscAI	CASTG	6 cut(s)	22, 244, 268, 301, 336, 346
TseI	GCWGC	2 cut(s)	20, 317
TspDTI	ATGAA	3 cut(s)	183, 263, 408
TspRI	CASTG	6 cut(s)	22, 244, 268, 301, 336, 346
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.