Prupe.4G160000_v2.0.a1

nucleotide-excision repair, DNA gap filling

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
9162148 .. 9167536
5389 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G160000.1

Sequence Viewer

Length: 1626 bp
ATGGCCCAAATCGAAACCCTAGGAATCATCCAAGACATCGAAACCCTCGTCTCCGATCAACTTCAAGTGGTTTCCTACAAATGGCTGAGTCGGAATTACTTGGTGTCTTCCAATGCTGCGAAGAGGTTACTCCATGAGTTTGTTGAAAAACATGGAAATGGGTTGGAAGTGGTATATGTTTTGGCTGGCTGGTTGAAGAGCAATCCTTCGAGCTACCATATAAGGCTTGTTTCTGGGCCTAAACTTGCAGAAGCAAAAGAAGAATTTGAAGGCAACTGTTCAGTCGAGGTTTATAGTGTGCAAGCTTGCATCCCAAAGGATCCAGCTGCATTGTGGAATGCTGAATTTGTACAAGCAGAGGAGCTCTTCAAGCAGGCTCCATCGGTTGAAAATTGCTTGAGGGATAACAGGTTTTGTGGGATTTCCAATTCCTTTGTTAAGCGTAATATGGAGGGAATGCCATTGAGCATTGAAGCTCCACAACTTAAAACCAAAGCAGTTGTAGGGCCATCTGAAAGCAATTTAACTCATCAAAATATTGCATTTCCAAAACATGTCCAGAATAAAGGACAACAATCTAGCCCAAAAGTTGGTTTACAGGCTCCCAATGTGGTAAAAGATGTCAAAAGTGAAAGCAATGGAACAGGAGCTTTTGATCAGGCTAACAAACCACCAGCAGTCAAAGATAAAGTTCCTCCTGTGCCTGCTAACAAAAAGAAAGTCCAAAATGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGTCGTGCATCTGTCAAGCCAAAGTCAAATACTCTGTCAGAAAATAATAATTCTATTCTTAATCATACTGGAGCTAGTGCAGACGCTCAAGTTTGTGCCCAAGAAGCAGTAGCCAGTGTCAGCAGCGACGATGATGGTCACGAAGTCAATTTCAAGAGAGCTTCCAACGGGGAAGGCACTAGAAAAAGGAGGGTTGTCTTTGATTTCTCAGATGATGACGAAGATGAAGATGCAGTTAATTTAGCATCACCAGATAATCAAAAAGAGCAATCATGCCAAGATCTGAAAGAAAGTAGCAAAGTTTTCGTTCCAGAGGGAACCAGTTTGAACTTTGACGAGCAGGTAGAAGATAAACCCAAGGTAGAAGATAAGCCCAAGGTAGAAGATAAACCCATGGTTAAGGAAGAGGTTTCTGTTGATCGAAAATCTAACCAATCTTTCAGAGAAGATTCTTCAGTTTCAGGCATCAGCAAAGGGAGAAATGCTGGGATTATCCTGAAAGAGAAGACACATAGCTGTATTCCCGAAAAAGATCTTAACAAAAAGGATAAACTGAACACCGCTGCTTCAAGTTCACCTAAAAGAAGAAAAGTTTTGAAGACAGTGATTGATGAACGTGGAAGAGAAGTGACTGAGGTAATCTGGGAGGGTGAGGAGACAGAAGCAAAGAAAGCCGACACTAGTATAACGAAGAAAGTTGATAATACAGTTGCCAGTGCTGTTAACAGGCCTCCTGCAGCTAAGAAGTCAGTGGTAAACACTGCTCCAACAAATGGTAAAGCAGGAAGCAAAAAGGGTGGAAACAAGGACCCTAAGCAAGGCAATATTCTTTCGTTCTTCAAGAAGGTCTAA

Protein Analysis

542

Amino Acids

58.98

Weight (kDa)

8.41

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1105
AccB7I CCANNNNNTGG 2 cut(s) 590, 1547
AciI CCGC 1 cut(s) 1335
AclWI GGATC 2 cut(s) 314, 327
AcsI RAATTY 3 cut(s) 263, 344, 766
AcuI CTGAAG 1 cut(s) 1212
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 4 cut(s) 81, 590, 1547, 1592
AflIII ACRYGT 1 cut(s) 553
AhlI ACTAGT 1 cut(s) 1454
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 55, 1424
AlwI GGATC 2 cut(s) 314, 327
AoxI GGCC 4 cut(s) 3, 236, 506, 1502
ApeKI GCWGC 5 cut(s) 116, 326, 897, 1337, 1511
ApoI RAATTY 3 cut(s) 263, 344, 766
ArsI GACNNNNNNTTYG 6 cut(s) 33, 65, 705, 737, 794, 826
AspA2I CCTAGG 1 cut(s) 19
AspS9I GGNCC 4 cut(s) 4, 236, 506, 1582
AsuHPI GGTGA 3 cut(s) 1014, 1341, 1436
AvaII GGWCC 1 cut(s) 1582
AvrII CCTAGG 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 874
BamHI GGATCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 3 cut(s) 99, 1286, 1379
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 5 cut(s) 103, 313, 909, 1324, 1523
BccI CCATC 3 cut(s) 388, 517, 902
BcgI CGANNNNNNTGC 2 cut(s) 1060, 1094
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 55, 1424
BcuI ACTAGT 1 cut(s) 1454
BfaI CTAG 5 cut(s) 20, 579, 849, 954, 1455
BfmI CTRYAG 1 cut(s) 1509
BfuAI ACCTGC 1 cut(s) 1105
BglII AGATCT 2 cut(s) 1054, 1306
BisI GCNGC 5 cut(s) 117, 327, 898, 1338, 1512
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 5 cut(s) 118, 328, 899, 1339, 1513
Bme18I GGWCC 1 cut(s) 1582
BmgT120I GGNCC 4 cut(s) 4, 236, 506, 1582
BmiI GGNNCC 5 cut(s) 321, 378, 603, 1093, 1584
BmsI GCATC 5 cut(s) 318, 791, 994, 1028, 1248
BpiI GAAGAC 3 cut(s) 99, 1286, 1379
BpmI CTGGAG 2 cut(s) 771, 864
Bpu10I CCTNAGC 1 cut(s) 1587
BpuEI CTTGAG 2 cut(s) 418, 846
BsaJI CCNNGG 4 cut(s) 19, 1131, 1149, 1167
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 590, 1547, 1592
Bse1I ACTGG 4 cut(s) 847, 888, 1095, 1488
Bse3DI GCAATG 1 cut(s) 643
BseDI CCNNGG 4 cut(s) 19, 1131, 1149, 1167
BseGI GGATG 2 cut(s) 27, 309
BseLI CCNNNNNNNGG 4 cut(s) 81, 590, 1547, 1592
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 3 cut(s) 77, 996, 1398
BseNI ACTGG 4 cut(s) 847, 888, 1095, 1488
BseRI GAGGAG 2 cut(s) 374, 1442
BseSI GKGCMC 1 cut(s) 874
BseXI GCAGC 5 cut(s) 103, 313, 909, 1324, 1523
BseYI CCCAGC 1 cut(s) 1259
BsgI GTGCAG 1 cut(s) 873
BshFI GGCC 4 cut(s) 5, 238, 508, 1504
BsiHKAI GWGCWC 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 81, 590, 1547, 1592
BsmAI GTCTC 2 cut(s) 55, 1424
BsmBI CGTCTC 1 cut(s) 55
BsmI GAATGC 2 cut(s) 343, 462
BsnI GGCC 4 cut(s) 5, 238, 508, 1504
Bsp1286I GDGCHC 2 cut(s) 366, 874
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
Bsp19I CCATGG 1 cut(s) 1167
BspACI CCGC 1 cut(s) 1335
BspANI GGCC 4 cut(s) 5, 238, 508, 1504
BspCNI CTCAG 3 cut(s) 78, 995, 1399
BspLI GGNNCC 5 cut(s) 321, 378, 603, 1093, 1584
BspMAI CTGCAG 1 cut(s) 1513
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 2 cut(s) 314, 327
BspQI GCTCTTC 3 cut(s) 191, 371, 745
BsrDI GCAATG 1 cut(s) 643
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 4 cut(s) 847, 888, 1095, 1488
BssECI CCNNGG 4 cut(s) 19, 1131, 1149, 1167
BssMI GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
BssT1I CCWWGG 4 cut(s) 19, 1131, 1149, 1167
Bst4CI ACNGT 3 cut(s) 278, 1378, 1483
Bst6I CTCTTC 6 cut(s) 116, 191, 371, 745, 1173, 1390
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 5 cut(s) 187, 303, 307, 375, 705
BstDEI CTNAG 5 cut(s) 86, 982, 1407, 1515, 1587
BstDSI CCRYGG 1 cut(s) 1167
BstENI CCTNNNNNAGG 1 cut(s) 1590
BstF5I GGATG 2 cut(s) 27, 309
BstKTI GATC 6 cut(s) 58, 322, 658, 1057, 1195, 1309
BstMAI GTCTC 2 cut(s) 55, 1424
BstMBI GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
BstMWI GCNNNNNNNGC 3 cut(s) 370, 878, 1445
BstNSI RCATGY 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 1509
BstSLI GKGCMC 1 cut(s) 874
BstV1I GCAGC 5 cut(s) 103, 313, 909, 1324, 1523
BstV2I GAAGAC 3 cut(s) 99, 1286, 1379
BstX2I RGATCY 3 cut(s) 319, 1054, 1306
BstYI RGATCY 3 cut(s) 319, 1054, 1306
BsuRI GGCC 4 cut(s) 5, 238, 508, 1504
BtgI CCRYGG 1 cut(s) 1167
BtsCI GGATG 2 cut(s) 27, 309
BtsI GCAGTG 1 cut(s) 1533
BtsIMutI CAGTG 5 cut(s) 895, 1383, 1495, 1530, 1533
BveI ACCTGC 1 cut(s) 1105
Cac8I GCNNGC 5 cut(s) 187, 303, 307, 375, 705
Cfr13I GGNCC 4 cut(s) 4, 236, 506, 1582
CseI GACGC 1 cut(s) 866
Csp6I GTAC 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 1552, 1587
CviAII CATG 5 cut(s) 134, 152, 554, 1047, 1168
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 5 cut(s) 86, 982, 1407, 1515, 1587
DpnI GATC 6 cut(s) 57, 321, 657, 1056, 1194, 1308
DpnII GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
Eam1104I CTCTTC 6 cut(s) 116, 191, 371, 745, 1173, 1390
EarI CTCTTC 6 cut(s) 116, 191, 371, 745, 1173, 1390
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 4 cut(s) 19, 1131, 1149, 1167
Eco147I AGGCCT 1 cut(s) 1504
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 1582
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 1212
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 1590
EcoO109I RGGNCCY 1 cut(s) 1582
EcoT14I CCWWGG 4 cut(s) 19, 1131, 1149, 1167
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 4 cut(s) 19, 1131, 1149, 1167
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 5 cut(s) 137, 155, 557, 1050, 1171
FatI CATG 5 cut(s) 133, 151, 553, 1046, 1167
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 5 cut(s) 117, 327, 898, 1338, 1512
FokI GGATG 2 cut(s) 14, 296
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 5 cut(s) 117, 327, 898, 1338, 1512
FspBI CTAG 5 cut(s) 20, 579, 849, 954, 1455
GluI GCNGC 5 cut(s) 117, 327, 898, 1338, 1512
GsaI CCCAGC 1 cut(s) 1263
GsuI CTGGAG 2 cut(s) 771, 864
HaeIII GGCC 4 cut(s) 5, 238, 508, 1504
HgaI GACGC 1 cut(s) 866
Hin1II CATG 5 cut(s) 137, 155, 557, 1050, 1171
HincII GTYRAC 1 cut(s) 1498
HindII GTYRAC 1 cut(s) 1498
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 3 cut(s) 24, 88, 1223
HpaI GTTAAC 1 cut(s) 1498
HphI GGTGA 3 cut(s) 1014, 1341, 1436
Hpy166II GTNNAC 4 cut(s) 596, 1349, 1498, 1531
Hpy188I TCNGA 7 cut(s) 55, 93, 514, 814, 985, 1059, 1217
Hpy188III TCNNGA 8 cut(s) 559, 750, 914, 928, 1085, 1270, 1298, 1615
Hpy8I GTNNAC 4 cut(s) 596, 1349, 1498, 1531
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 4 cut(s) 216, 263, 941, 1612
HpyCH4III ACNGT 3 cut(s) 278, 1378, 1483
HpyCH4IV ACGT 1 cut(s) 1390
HpyCH4V TGCA 9 cut(s) 248, 301, 309, 329, 542, 782, 854, 1007, 1511
HpyF10VI GCNNNNNNNGC 3 cut(s) 370, 878, 1445
HpyF3I CTNAG 5 cut(s) 86, 982, 1407, 1515, 1587
HpySE526I ACGT 1 cut(s) 1390
Hsp92II CATG 5 cut(s) 137, 155, 557, 1050, 1171
Ksp22I TGATCA 1 cut(s) 655
KspAI GTTAAC 1 cut(s) 1498
Kzo9I GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
LguI GCTCTTC 3 cut(s) 191, 371, 745
LmnI GCTCC 7 cut(s) 361, 382, 481, 607, 647, 845, 1543
Lsp1109I GCAGC 5 cut(s) 103, 313, 909, 1324, 1523
LweI GCATC 5 cut(s) 318, 791, 994, 1028, 1248
MaeI CTAG 5 cut(s) 20, 579, 849, 954, 1455
MaeII ACGT 1 cut(s) 1390
MaeIII GTNAC 3 cut(s) 126, 911, 1402
MalI GATC 6 cut(s) 57, 321, 657, 1056, 1194, 1308
MboI GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
MflI RGATCY 3 cut(s) 319, 1054, 1306
MhlI GDGCHC 2 cut(s) 366, 874
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 4 cut(s) 71, 144, 963, 1565
MseI TTAA 8 cut(s) 438, 486, 524, 834, 1011, 1173, 1311, 1497
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 326, 1337
Mva1269I GAATGC 2 cut(s) 343, 462
MwoI GCNNNNNNNGC 3 cut(s) 370, 878, 1445
NcoI CCATGG 1 cut(s) 1167
NdeII GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
NlaIII CATG 5 cut(s) 137, 155, 557, 1050, 1171
NlaIV GGNNCC 5 cut(s) 321, 378, 603, 1093, 1584
NmuCI GTSAC 2 cut(s) 911, 1402
NspI RCATGY 1 cut(s) 557
PceI AGGCCT 1 cut(s) 1504
PciI ACATGT 1 cut(s) 553
PciSI GCTCTTC 3 cut(s) 191, 371, 745
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 343, 462
PfeI GAWTC 2 cut(s) 24, 1223
PflMI CCANNNNNTGG 2 cut(s) 590, 1547
PkrI GCNGC 5 cut(s) 118, 328, 899, 1339, 1513
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 1582
PscI ACATGT 1 cut(s) 553
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 1582
PspFI CCCAGC 1 cut(s) 1259
PspN4I GGNNCC 5 cut(s) 321, 378, 603, 1093, 1584
PspPI GGNCC 4 cut(s) 4, 236, 506, 1582
PspPPI RGGWCCY 1 cut(s) 1582
PstI CTGCAG 1 cut(s) 1513
PsuI RGATCY 3 cut(s) 319, 1054, 1306
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 366
SapI GCTCTTC 3 cut(s) 191, 371, 745
SaqAI TTAA 8 cut(s) 438, 486, 524, 834, 1011, 1173, 1311, 1497
SatI GCNGC 5 cut(s) 117, 327, 898, 1338, 1512
Sau3AI GATC 6 cut(s) 55, 319, 655, 1054, 1192, 1306
Sau96I GGNCC 4 cut(s) 4, 236, 506, 1582
SchI GAGTC 1 cut(s) 97
SduI GDGCHC 2 cut(s) 366, 874
SfaNI GCATC 5 cut(s) 318, 791, 994, 1028, 1248
SfcI CTRYAG 1 cut(s) 1509
SinI GGWCC 1 cut(s) 1582
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 397, 861
SmoI CTYRAG 2 cut(s) 397, 861
SpeI ACTAGT 1 cut(s) 1454
SseBI AGGCCT 1 cut(s) 1504
SsiI CCGC 1 cut(s) 1335
SspI AATATT 2 cut(s) 538, 1600
SspMI CTAG 5 cut(s) 20, 579, 849, 954, 1455
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 1504
StyI CCWWGG 4 cut(s) 19, 1131, 1149, 1167
TaaI ACNGT 3 cut(s) 278, 1378, 1483
TaiI ACGT 1 cut(s) 1393
TaqI TCGA 5 cut(s) 12, 39, 209, 285, 1195
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 2 cut(s) 24, 1223
Tru1I TTAA 8 cut(s) 438, 486, 524, 834, 1011, 1173, 1311, 1497
Tru9I TTAA 8 cut(s) 438, 486, 524, 834, 1011, 1173, 1311, 1497
TscAI CASTG 5 cut(s) 895, 1383, 1495, 1530, 1540
TseFI GTSAC 2 cut(s) 911, 1402
TseI GCWGC 5 cut(s) 116, 326, 897, 1337, 1511
Tsp45I GTSAC 2 cut(s) 911, 1402
TspDTI ATGAA 3 cut(s) 747, 1014, 1401
TspRI CASTG 5 cut(s) 895, 1383, 1495, 1530, 1540
Van91I CCANNNNNTGG 2 cut(s) 590, 1547
VpaK11BI GGWCC 1 cut(s) 1582
XagI CCTNNNNNAGG 1 cut(s) 1590
XapI RAATTY 3 cut(s) 263, 344, 766
XceI RCATGY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XmaJI CCTAGG 1 cut(s) 19
XspI CTAG 5 cut(s) 20, 579, 849, 954, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.