nucleotide-excision repair, DNA gap filling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G78650 |
| fragaria_vesca | FvH4_3g18120 FvH4_3g18120 |
| malus_domestica | MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1 |
| prunus_persica | Prupe.4G160000_v2.0.a1 |
| pyrus_communis | pycom03g19400 pycom11g23420 |
| rosa_chinensis | RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521 |
| rosa_laevigata | RLG00000033222 |
| rosa_multiflora | Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00049780 |
| rosa_rugosa | Rorug05G0118200 |
| rosa_samantha | Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100 |
| rosa_wichuraiana | Rw5G019220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1105 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 590, 1547 |
| AciI | CCGC | 1 cut(s) | 1335 |
| AclWI | GGATC | 2 cut(s) | 314, 327 |
| AcsI | RAATTY | 3 cut(s) | 263, 344, 766 |
| AcuI | CTGAAG | 1 cut(s) | 1212 |
| AfaI | GTAC | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 81, 590, 1547, 1592 |
| AflIII | ACRYGT | 1 cut(s) | 553 |
| AhlI | ACTAGT | 1 cut(s) | 1454 |
| Alw21I | GWGCWC | 1 cut(s) | 366 |
| Alw26I | GTCTC | 2 cut(s) | 55, 1424 |
| AlwI | GGATC | 2 cut(s) | 314, 327 |
| AoxI | GGCC | 4 cut(s) | 3, 236, 506, 1502 |
| ApeKI | GCWGC | 5 cut(s) | 116, 326, 897, 1337, 1511 |
| ApoI | RAATTY | 3 cut(s) | 263, 344, 766 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 33, 65, 705, 737, 794, 826 |
| AspA2I | CCTAGG | 1 cut(s) | 19 |
| AspS9I | GGNCC | 4 cut(s) | 4, 236, 506, 1582 |
| AsuHPI | GGTGA | 3 cut(s) | 1014, 1341, 1436 |
| AvaII | GGWCC | 1 cut(s) | 1582 |
| AvrII | CCTAGG | 1 cut(s) | 19 |
| BaeGI | GKGCMC | 1 cut(s) | 874 |
| BamHI | GGATCC | 1 cut(s) | 319 |
| BanII | GRGCYC | 1 cut(s) | 366 |
| BbsI | GAAGAC | 3 cut(s) | 99, 1286, 1379 |
| Bbv12I | GWGCWC | 1 cut(s) | 366 |
| BbvI | GCAGC | 5 cut(s) | 103, 313, 909, 1324, 1523 |
| BccI | CCATC | 3 cut(s) | 388, 517, 902 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1060, 1094 |
| BclI | TGATCA | 1 cut(s) | 655 |
| BcoDI | GTCTC | 2 cut(s) | 55, 1424 |
| BcuI | ACTAGT | 1 cut(s) | 1454 |
| BfaI | CTAG | 5 cut(s) | 20, 579, 849, 954, 1455 |
| BfmI | CTRYAG | 1 cut(s) | 1509 |
| BfuAI | ACCTGC | 1 cut(s) | 1105 |
| BglII | AGATCT | 2 cut(s) | 1054, 1306 |
| BisI | GCNGC | 5 cut(s) | 117, 327, 898, 1338, 1512 |
| BlnI | CCTAGG | 1 cut(s) | 19 |
| BlsI | GCNGC | 5 cut(s) | 118, 328, 899, 1339, 1513 |
| Bme18I | GGWCC | 1 cut(s) | 1582 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 236, 506, 1582 |
| BmiI | GGNNCC | 5 cut(s) | 321, 378, 603, 1093, 1584 |
| BmsI | GCATC | 5 cut(s) | 318, 791, 994, 1028, 1248 |
| BpiI | GAAGAC | 3 cut(s) | 99, 1286, 1379 |
| BpmI | CTGGAG | 2 cut(s) | 771, 864 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1587 |
| BpuEI | CTTGAG | 2 cut(s) | 418, 846 |
| BsaJI | CCNNGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 81, 590, 1547, 1592 |
| Bse1I | ACTGG | 4 cut(s) | 847, 888, 1095, 1488 |
| Bse3DI | GCAATG | 1 cut(s) | 643 |
| BseDI | CCNNGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| BseGI | GGATG | 2 cut(s) | 27, 309 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 81, 590, 1547, 1592 |
| BseMI | GCAATG | 1 cut(s) | 643 |
| BseMII | CTCAG | 3 cut(s) | 77, 996, 1398 |
| BseNI | ACTGG | 4 cut(s) | 847, 888, 1095, 1488 |
| BseRI | GAGGAG | 2 cut(s) | 374, 1442 |
| BseSI | GKGCMC | 1 cut(s) | 874 |
| BseXI | GCAGC | 5 cut(s) | 103, 313, 909, 1324, 1523 |
| BseYI | CCCAGC | 1 cut(s) | 1259 |
| BsgI | GTGCAG | 1 cut(s) | 873 |
| BshFI | GGCC | 4 cut(s) | 5, 238, 508, 1504 |
| BsiHKAI | GWGCWC | 1 cut(s) | 366 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 81, 590, 1547, 1592 |
| BsmAI | GTCTC | 2 cut(s) | 55, 1424 |
| BsmBI | CGTCTC | 1 cut(s) | 55 |
| BsmI | GAATGC | 2 cut(s) | 343, 462 |
| BsnI | GGCC | 4 cut(s) | 5, 238, 508, 1504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 366, 874 |
| Bsp1407I | TGTACA | 1 cut(s) | 349 |
| Bsp143I | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| Bsp19I | CCATGG | 1 cut(s) | 1167 |
| BspACI | CCGC | 1 cut(s) | 1335 |
| BspANI | GGCC | 4 cut(s) | 5, 238, 508, 1504 |
| BspCNI | CTCAG | 3 cut(s) | 78, 995, 1399 |
| BspLI | GGNNCC | 5 cut(s) | 321, 378, 603, 1093, 1584 |
| BspMAI | CTGCAG | 1 cut(s) | 1513 |
| BspMI | ACCTGC | 1 cut(s) | 1105 |
| BspPI | GGATC | 2 cut(s) | 314, 327 |
| BspQI | GCTCTTC | 3 cut(s) | 191, 371, 745 |
| BsrDI | GCAATG | 1 cut(s) | 643 |
| BsrGI | TGTACA | 1 cut(s) | 349 |
| BsrI | ACTGG | 4 cut(s) | 847, 888, 1095, 1488 |
| BssECI | CCNNGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| BssMI | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| BssT1I | CCWWGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| Bst4CI | ACNGT | 3 cut(s) | 278, 1378, 1483 |
| Bst6I | CTCTTC | 6 cut(s) | 116, 191, 371, 745, 1173, 1390 |
| BstAUI | TGTACA | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 5 cut(s) | 187, 303, 307, 375, 705 |
| BstDEI | CTNAG | 5 cut(s) | 86, 982, 1407, 1515, 1587 |
| BstDSI | CCRYGG | 1 cut(s) | 1167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1590 |
| BstF5I | GGATG | 2 cut(s) | 27, 309 |
| BstKTI | GATC | 6 cut(s) | 58, 322, 658, 1057, 1195, 1309 |
| BstMAI | GTCTC | 2 cut(s) | 55, 1424 |
| BstMBI | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 370, 878, 1445 |
| BstNSI | RCATGY | 1 cut(s) | 557 |
| BstSFI | CTRYAG | 1 cut(s) | 1509 |
| BstSLI | GKGCMC | 1 cut(s) | 874 |
| BstV1I | GCAGC | 5 cut(s) | 103, 313, 909, 1324, 1523 |
| BstV2I | GAAGAC | 3 cut(s) | 99, 1286, 1379 |
| BstX2I | RGATCY | 3 cut(s) | 319, 1054, 1306 |
| BstYI | RGATCY | 3 cut(s) | 319, 1054, 1306 |
| BsuRI | GGCC | 4 cut(s) | 5, 238, 508, 1504 |
| BtgI | CCRYGG | 1 cut(s) | 1167 |
| BtsCI | GGATG | 2 cut(s) | 27, 309 |
| BtsI | GCAGTG | 1 cut(s) | 1533 |
| BtsIMutI | CAGTG | 5 cut(s) | 895, 1383, 1495, 1530, 1533 |
| BveI | ACCTGC | 1 cut(s) | 1105 |
| Cac8I | GCNNGC | 5 cut(s) | 187, 303, 307, 375, 705 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 236, 506, 1582 |
| CseI | GACGC | 1 cut(s) | 866 |
| Csp6I | GTAC | 1 cut(s) | 350 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1552, 1587 |
| CviAII | CATG | 5 cut(s) | 134, 152, 554, 1047, 1168 |
| CviQI | GTAC | 1 cut(s) | 350 |
| DdeI | CTNAG | 5 cut(s) | 86, 982, 1407, 1515, 1587 |
| DpnI | GATC | 6 cut(s) | 57, 321, 657, 1056, 1194, 1308 |
| DpnII | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| Eam1104I | CTCTTC | 6 cut(s) | 116, 191, 371, 745, 1173, 1390 |
| EarI | CTCTTC | 6 cut(s) | 116, 191, 371, 745, 1173, 1390 |
| Ecl136II | GAGCTC | 1 cut(s) | 364 |
| Eco130I | CCWWGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| Eco147I | AGGCCT | 1 cut(s) | 1504 |
| Eco24I | GRGCYC | 1 cut(s) | 366 |
| Eco47I | GGWCC | 1 cut(s) | 1582 |
| Eco53kI | GAGCTC | 1 cut(s) | 364 |
| Eco57I | CTGAAG | 1 cut(s) | 1212 |
| EcoICRI | GAGCTC | 1 cut(s) | 364 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1590 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1582 |
| EcoT14I | CCWWGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| EcoT38I | GRGCYC | 1 cut(s) | 366 |
| ErhI | CCWWGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| Esp3I | CGTCTC | 1 cut(s) | 55 |
| FaeI | CATG | 5 cut(s) | 137, 155, 557, 1050, 1171 |
| FatI | CATG | 5 cut(s) | 133, 151, 553, 1046, 1167 |
| FbaI | TGATCA | 1 cut(s) | 655 |
| Fnu4HI | GCNGC | 5 cut(s) | 117, 327, 898, 1338, 1512 |
| FokI | GGATG | 2 cut(s) | 14, 296 |
| FriOI | GRGCYC | 1 cut(s) | 366 |
| Fsp4HI | GCNGC | 5 cut(s) | 117, 327, 898, 1338, 1512 |
| FspBI | CTAG | 5 cut(s) | 20, 579, 849, 954, 1455 |
| GluI | GCNGC | 5 cut(s) | 117, 327, 898, 1338, 1512 |
| GsaI | CCCAGC | 1 cut(s) | 1263 |
| GsuI | CTGGAG | 2 cut(s) | 771, 864 |
| HaeIII | GGCC | 4 cut(s) | 5, 238, 508, 1504 |
| HgaI | GACGC | 1 cut(s) | 866 |
| Hin1II | CATG | 5 cut(s) | 137, 155, 557, 1050, 1171 |
| HincII | GTYRAC | 1 cut(s) | 1498 |
| HindII | GTYRAC | 1 cut(s) | 1498 |
| HindIII | AAGCTT | 1 cut(s) | 303 |
| HinfI | GANTC | 3 cut(s) | 24, 88, 1223 |
| HpaI | GTTAAC | 1 cut(s) | 1498 |
| HphI | GGTGA | 3 cut(s) | 1014, 1341, 1436 |
| Hpy166II | GTNNAC | 4 cut(s) | 596, 1349, 1498, 1531 |
| Hpy188I | TCNGA | 7 cut(s) | 55, 93, 514, 814, 985, 1059, 1217 |
| Hpy188III | TCNNGA | 8 cut(s) | 559, 750, 914, 928, 1085, 1270, 1298, 1615 |
| Hpy8I | GTNNAC | 4 cut(s) | 596, 1349, 1498, 1531 |
| Hpy99I | CGWCG | 1 cut(s) | 905 |
| HpyAV | CCTTC | 4 cut(s) | 216, 263, 941, 1612 |
| HpyCH4III | ACNGT | 3 cut(s) | 278, 1378, 1483 |
| HpyCH4IV | ACGT | 1 cut(s) | 1390 |
| HpyCH4V | TGCA | 9 cut(s) | 248, 301, 309, 329, 542, 782, 854, 1007, 1511 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 370, 878, 1445 |
| HpyF3I | CTNAG | 5 cut(s) | 86, 982, 1407, 1515, 1587 |
| HpySE526I | ACGT | 1 cut(s) | 1390 |
| Hsp92II | CATG | 5 cut(s) | 137, 155, 557, 1050, 1171 |
| Ksp22I | TGATCA | 1 cut(s) | 655 |
| KspAI | GTTAAC | 1 cut(s) | 1498 |
| Kzo9I | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| LguI | GCTCTTC | 3 cut(s) | 191, 371, 745 |
| LmnI | GCTCC | 7 cut(s) | 361, 382, 481, 607, 647, 845, 1543 |
| Lsp1109I | GCAGC | 5 cut(s) | 103, 313, 909, 1324, 1523 |
| LweI | GCATC | 5 cut(s) | 318, 791, 994, 1028, 1248 |
| MaeI | CTAG | 5 cut(s) | 20, 579, 849, 954, 1455 |
| MaeII | ACGT | 1 cut(s) | 1390 |
| MaeIII | GTNAC | 3 cut(s) | 126, 911, 1402 |
| MalI | GATC | 6 cut(s) | 57, 321, 657, 1056, 1194, 1308 |
| MboI | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| MflI | RGATCY | 3 cut(s) | 319, 1054, 1306 |
| MhlI | GDGCHC | 2 cut(s) | 366, 874 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MmeI | TCCRAC | 4 cut(s) | 71, 144, 963, 1565 |
| MseI | TTAA | 8 cut(s) | 438, 486, 524, 834, 1011, 1173, 1311, 1497 |
| MslI | CAYNNNNRTG | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 2 cut(s) | 326, 1337 |
| Mva1269I | GAATGC | 2 cut(s) | 343, 462 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 370, 878, 1445 |
| NcoI | CCATGG | 1 cut(s) | 1167 |
| NdeII | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| NlaIII | CATG | 5 cut(s) | 137, 155, 557, 1050, 1171 |
| NlaIV | GGNNCC | 5 cut(s) | 321, 378, 603, 1093, 1584 |
| NmuCI | GTSAC | 2 cut(s) | 911, 1402 |
| NspI | RCATGY | 1 cut(s) | 557 |
| PceI | AGGCCT | 1 cut(s) | 1504 |
| PciI | ACATGT | 1 cut(s) | 553 |
| PciSI | GCTCTTC | 3 cut(s) | 191, 371, 745 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PctI | GAATGC | 2 cut(s) | 343, 462 |
| PfeI | GAWTC | 2 cut(s) | 24, 1223 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 590, 1547 |
| PkrI | GCNGC | 5 cut(s) | 118, 328, 899, 1339, 1513 |
| PleI | GAGTC | 1 cut(s) | 96 |
| PpsI | GAGTC | 1 cut(s) | 96 |
| PpuMI | RGGWCCY | 1 cut(s) | 1582 |
| PscI | ACATGT | 1 cut(s) | 553 |
| Psp124BI | GAGCTC | 1 cut(s) | 366 |
| Psp5II | RGGWCCY | 1 cut(s) | 1582 |
| PspFI | CCCAGC | 1 cut(s) | 1259 |
| PspN4I | GGNNCC | 5 cut(s) | 321, 378, 603, 1093, 1584 |
| PspPI | GGNCC | 4 cut(s) | 4, 236, 506, 1582 |
| PspPPI | RGGWCCY | 1 cut(s) | 1582 |
| PstI | CTGCAG | 1 cut(s) | 1513 |
| PsuI | RGATCY | 3 cut(s) | 319, 1054, 1306 |
| PvuII | CAGCTG | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 351 |
| RsaNI | GTAC | 1 cut(s) | 350 |
| RseI | CAYNNNNRTG | 1 cut(s) | 156 |
| SacI | GAGCTC | 1 cut(s) | 366 |
| SapI | GCTCTTC | 3 cut(s) | 191, 371, 745 |
| SaqAI | TTAA | 8 cut(s) | 438, 486, 524, 834, 1011, 1173, 1311, 1497 |
| SatI | GCNGC | 5 cut(s) | 117, 327, 898, 1338, 1512 |
| Sau3AI | GATC | 6 cut(s) | 55, 319, 655, 1054, 1192, 1306 |
| Sau96I | GGNCC | 4 cut(s) | 4, 236, 506, 1582 |
| SchI | GAGTC | 1 cut(s) | 97 |
| SduI | GDGCHC | 2 cut(s) | 366, 874 |
| SfaNI | GCATC | 5 cut(s) | 318, 791, 994, 1028, 1248 |
| SfcI | CTRYAG | 1 cut(s) | 1509 |
| SinI | GGWCC | 1 cut(s) | 1582 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 156 |
| SmlI | CTYRAG | 2 cut(s) | 397, 861 |
| SmoI | CTYRAG | 2 cut(s) | 397, 861 |
| SpeI | ACTAGT | 1 cut(s) | 1454 |
| SseBI | AGGCCT | 1 cut(s) | 1504 |
| SsiI | CCGC | 1 cut(s) | 1335 |
| SspI | AATATT | 2 cut(s) | 538, 1600 |
| SspMI | CTAG | 5 cut(s) | 20, 579, 849, 954, 1455 |
| SstI | GAGCTC | 1 cut(s) | 366 |
| StuI | AGGCCT | 1 cut(s) | 1504 |
| StyI | CCWWGG | 4 cut(s) | 19, 1131, 1149, 1167 |
| TaaI | ACNGT | 3 cut(s) | 278, 1378, 1483 |
| TaiI | ACGT | 1 cut(s) | 1393 |
| TaqI | TCGA | 5 cut(s) | 12, 39, 209, 285, 1195 |
| TatI | WGTACW | 1 cut(s) | 349 |
| TfiI | GAWTC | 2 cut(s) | 24, 1223 |
| Tru1I | TTAA | 8 cut(s) | 438, 486, 524, 834, 1011, 1173, 1311, 1497 |
| Tru9I | TTAA | 8 cut(s) | 438, 486, 524, 834, 1011, 1173, 1311, 1497 |
| TscAI | CASTG | 5 cut(s) | 895, 1383, 1495, 1530, 1540 |
| TseFI | GTSAC | 2 cut(s) | 911, 1402 |
| TseI | GCWGC | 5 cut(s) | 116, 326, 897, 1337, 1511 |
| Tsp45I | GTSAC | 2 cut(s) | 911, 1402 |
| TspDTI | ATGAA | 3 cut(s) | 747, 1014, 1401 |
| TspRI | CASTG | 5 cut(s) | 895, 1383, 1495, 1530, 1540 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 590, 1547 |
| VpaK11BI | GGWCC | 1 cut(s) | 1582 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1590 |
| XapI | RAATTY | 3 cut(s) | 263, 344, 766 |
| XceI | RCATGY | 1 cut(s) | 557 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 330 |
| XmaJI | CCTAGG | 1 cut(s) | 19 |
| XspI | CTAG | 5 cut(s) | 20, 579, 849, 954, 1455 |