Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Reverse (-)

20003124 .. 20006396

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAAACCCTGGGAATCATCCAAGACATCGAAACCCTCGTATCCGATCAACTTCAAGTGGTTTCGTACAAGTGGCTGAGTCGAAATTACTTTGTGTCTTCCAATGCTGCAAAGAGGTTACTCCAGGAGTTTGTTGAAAAACATGGAAATGGGTTCGAAGTGTTGTATGTTTTGGCTGGCTGGTTAAAGAGTGATCCTTCAAGCTACCATATAAGGCTTGTTTCTGGGCCTAAACTTGCAGAAGCAAAAGAAGAATTAGATTGCAACTGCTCCGTCGGGGTTTATAGTGTGCAAGCTTGCATCCCAAAGGATCGAGCTGCACTGTGGAATGCTGAATTTGTGCAAGCAGAAATGCTCTTTAAGCAGGCTCCTACGGTTGAGAATTGCTTGAGAGATAACAGGTTTTGTGGGATTTCCAATTCCTTTGTTAAGCGTAATGTGGACGGAGCACCATTGAGCACTGAATCTCCGCAACTTAACTCTGAGGCAGTAATAGGGCAACCAGAAAGTAATTTAGCTCATCAAAGTATCCCAATTCCAAAACAAGTCCAGAATAAAGGACAGCAATCTAGCCCAAAAATCAGTTTACAGCCTACTAATGTGGTCGAAGATGTCAAAAATGAAATTAATGGAACAAGAGTTTTTGGTCAGGCTAACAAACGTCCTGCAGACAAAGAAAAAGTTCAGAATGAGAAAAGCTCCTCTGCTTCTGGAGGTTCATTGGCGAATTTCTGGGGCCGGGCATCTGTGAAGTCAAAGTCAGATGCTCCAGAGAAATATAATAATTCCATTCCTGATCATACTGGAGCTAGTGCAGAGCCTCAAACTTGTGCTCGAGAAGCAGTAGCAGGTAGCAGTGACGATGATGGTCAACAAGTTAATTTTAAGAGATCTTCCAACGGTGAAGGCACTAGGAAAAGGAGGGTTGTCTTTGATTTCTCAGATGACGATGAAGATGCAGTTAATTTAGCATCACCGGAGATTCTAAAAGGACAATCGTGCCTAGATCTGAAAGAAAGCAATAAAGTTATGGTTCCAGAGAGACCGAATTTGAATTTTGACGAGCAGGTAGAAGATAACCCCAAGGTTAAGGAAGAAATATCTGTAGATGGGGAATCCAACCAACCTTTCAGAGATAGATCCTTCAGTTGTCAGAAAAGTGATAAATGCTGGGATTATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

395

Amino Acids

43.6

Weight (kDa)

5.19

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC27	PF09507	20 - 308	2.7e-17	DNA polymerase subunit Cdc27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	839, 1057
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	3 cut(s)	188, 318, 1134
AcsI	RAATTY	4 cut(s)	335, 727, 1048, 1054
AcuI	CTGAAG	1 cut(s)	1129
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	56, 137, 201, 1054
AjnI	CCWGG	2 cut(s)	9, 123
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AluBI	AGCT	6 cut(s)	204, 296, 317, 518, 699, 809
AluI	AGCT	6 cut(s)	204, 296, 317, 518, 699, 809
Alw21I	GWGCWC	3 cut(s)	451, 461, 835
Alw26I	GTCTC	1 cut(s)	1036
AlwI	GGATC	3 cut(s)	188, 318, 1134
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	2 cut(s)	227, 736
ApeKI	GCWGC	2 cut(s)	107, 317
ApoI	RAATTY	4 cut(s)	335, 727, 1048, 1054
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	227, 736
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	2 cut(s)	914, 966
AsuII	TTCGAA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	834
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	451, 461, 835
BbvI	GCAGC	2 cut(s)	94, 304
BccI	CCATC	2 cut(s)	860, 1103
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	2 cut(s)	11, 125
BciVI	GTATCC	2 cut(s)	52, 539
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	1036
BfaI	CTAG	4 cut(s)	570, 810, 912, 1004
BfmI	CTRYAG	2 cut(s)	666, 1104
BfuAI	ACCTGC	2 cut(s)	839, 1057
BfuI	GTATCC	2 cut(s)	52, 539
BglII	AGATCT	2 cut(s)	890, 1006
BisI	GCNGC	2 cut(s)	108, 318
BlsI	GCNGC	2 cut(s)	109, 319
Bme1390I	CCNGG	3 cut(s)	11, 125, 740
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	2 cut(s)	227, 736
BmiI	GGNNCC	3 cut(s)	369, 737, 1035
BmrFI	CCNGG	3 cut(s)	11, 125, 740
BmsI	GCATC	5 cut(s)	309, 752, 754, 946, 980
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	4 cut(s)	107, 732, 753, 825
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	3 cut(s)	9, 10, 1083
BsaWI	WCCGGW	1 cut(s)	976
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bse1I	ACTGG	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	11, 125
BseDI	CCNNGG	3 cut(s)	9, 10, 1083
BseGI	GGATG	2 cut(s)	18, 300
BseMII	CTCAG	3 cut(s)	68, 474, 954
BseNI	ACTGG	1 cut(s)	808
BseRI	GAGGAG	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	94, 304
BseYI	CCCAGC	1 cut(s)	1170
BsgI	GTGCAG	2 cut(s)	303, 834
BshFI	GGCC	2 cut(s)	229, 738
BsiHKAI	GWGCWC	3 cut(s)	451, 461, 835
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	739, 977
BsmAI	GTCTC	1 cut(s)	1036
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	229, 738
Bso31I	GGTCTC	1 cut(s)	1036
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	3 cut(s)	451, 461, 835
Bsp143I	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	229, 738
BspCNI	CTCAG	3 cut(s)	69, 475, 953
BspLI	GGNNCC	3 cut(s)	369, 737, 1035
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	839, 1057
BspPI	GGATC	3 cut(s)	188, 318, 1134
BspT104I	TTCGAA	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	1036
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	3 cut(s)	9, 10, 1083
BssMI	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
BssT1I	CCWWGG	1 cut(s)	1083
Bst2UI	CCWGG	2 cut(s)	11, 125
Bst4CI	ACNGT	3 cut(s)	324, 376, 902
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	5 cut(s)	178, 294, 298, 345, 366
BstDEI	CTNAG	3 cut(s)	77, 483, 940
BstF5I	GGATG	2 cut(s)	18, 300
BstKTI	GATC	7 cut(s)	49, 196, 313, 799, 893, 1009, 1142
BstMAI	GTCTC	1 cut(s)	1036
BstMBI	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 839
BstNI	CCWGG	2 cut(s)	11, 125
BstSCI	CCNGG	3 cut(s)	9, 123, 738
BstSFI	CTRYAG	2 cut(s)	666, 1104
BstV1I	GCAGC	2 cut(s)	94, 304
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	890, 1006, 1139
BstYI	RGATCY	3 cut(s)	890, 1006, 1139
BsuI	GTATCC	2 cut(s)	52, 539
BsuRI	GGCC	2 cut(s)	229, 738
BtsCI	GGATG	2 cut(s)	18, 300
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	3 cut(s)	320, 459, 862
BveI	ACCTGC	2 cut(s)	839, 1057
Cac8I	GCNNGC	5 cut(s)	178, 294, 298, 345, 366
Cfr13I	GGNCC	2 cut(s)	227, 736
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	77, 483, 940
DpnI	GATC	7 cut(s)	48, 195, 312, 798, 892, 1008, 1141
DpnII	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
Eco130I	CCWWGG	1 cut(s)	1083
Eco31I	GGTCTC	1 cut(s)	1036
Eco57I	CTGAAG	1 cut(s)	1129
Eco88I	CYCGRG	1 cut(s)	834
EcoRII	CCWGG	2 cut(s)	9, 123
EcoT14I	CCWWGG	1 cut(s)	1083
ErhI	CCWWGG	1 cut(s)	1083
FaeI	CATG	1 cut(s)	146
FaiI	YATR	8 cut(s)	144, 168, 210, 212, 285, 780, 801, 1031
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	2 cut(s)	108, 318
FokI	GGATG	2 cut(s)	5, 287
Fsp4HI	GCNGC	2 cut(s)	108, 318
FspBI	CTAG	4 cut(s)	570, 810, 912, 1004
GluI	GCNGC	2 cut(s)	108, 318
GsaI	CCCAGC	1 cut(s)	1174
GsuI	CTGGAG	4 cut(s)	107, 732, 753, 825
HaeIII	GGCC	2 cut(s)	229, 738
HapII	CCGG	2 cut(s)	739, 977
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	872
HindII	GTYRAC	1 cut(s)	872
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	5 cut(s)	15, 79, 464, 982, 1115
HpaII	CCGG	2 cut(s)	739, 977
HphI	GGTGA	2 cut(s)	914, 966
Hpy166II	GTNNAC	3 cut(s)	442, 587, 872
Hpy188I	TCNGA	8 cut(s)	46, 484, 687, 763, 943, 1011, 1133, 1155
Hpy188III	TCNNGA	6 cut(s)	550, 711, 770, 794, 836, 1037
Hpy8I	GTNNAC	3 cut(s)	442, 587, 872
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	207, 899, 1153
HpyCH4III	ACNGT	3 cut(s)	324, 376, 902
HpyCH4IV	ACGT	1 cut(s)	661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 839
HpyF3I	CTNAG	3 cut(s)	77, 483, 940
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
LmnI	GCTCC	6 cut(s)	275, 373, 446, 704, 772, 806
Lsp1109I	GCAGC	2 cut(s)	94, 304
LweI	GCATC	5 cut(s)	309, 752, 754, 946, 980
MaeI	CTAG	4 cut(s)	570, 810, 912, 1004
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	2 cut(s)	117, 857
MalI	GATC	7 cut(s)	48, 195, 312, 798, 892, 1008, 1141
MboI	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
MboII	GAAGA	7 cut(s)	90, 263, 620, 885, 965, 1085, 1106
MflI	RGATCY	3 cut(s)	890, 1006, 1139
MhlI	GDGCHC	3 cut(s)	451, 461, 835
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	921, 1143
MnlI	CCTC	7 cut(s)	47, 108, 478, 707, 712, 831, 915
MroXI	GAANNNNTTC	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	2 cut(s)	739, 977
MspR9I	CCNGG	3 cut(s)	11, 125, 740
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	11, 125
MwoI	GCNNNNNNNGC	2 cut(s)	361, 839
NciI	CCSGG	1 cut(s)	740
NdeII	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	3 cut(s)	369, 737, 1035
NmuCI	GTSAC	1 cut(s)	857
NspV	TTCGAA	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	834
PasI	CCCWGGG	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	4 cut(s)	15, 464, 982, 1115
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	109, 319
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	9, 123
PspFI	CCCAGC	1 cut(s)	1170
PspGI	CCWGG	2 cut(s)	9, 123
PspN4I	GGNNCC	3 cut(s)	369, 737, 1035
PspPI	GGNCC	2 cut(s)	227, 736
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	3 cut(s)	890, 1006, 1139
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	2 cut(s)	108, 318
Sau3AI	GATC	7 cut(s)	46, 193, 310, 796, 890, 1006, 1139
Sau96I	GGNCC	2 cut(s)	227, 736
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	11, 125, 740
SduI	GDGCHC	3 cut(s)	451, 461, 835
SfaNI	GCATC	5 cut(s)	309, 752, 754, 946, 980
SfcI	CTRYAG	2 cut(s)	666, 1104
Sfr274I	CTCGAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	388, 834
SmoI	CTYRAG	2 cut(s)	388, 834
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	4 cut(s)	570, 810, 912, 1004
StyD4I	CCNGG	3 cut(s)	9, 123, 738
StyI	CCWWGG	1 cut(s)	1083
TaaI	ACNGT	3 cut(s)	324, 376, 902
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	6 cut(s)	30, 82, 156, 313, 606, 835
TaqII	GACCGA	1 cut(s)	1060
TfiI	GAWTC	4 cut(s)	15, 464, 982, 1115
TscAI	CASTG	3 cut(s)	327, 466, 862
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	2 cut(s)	107, 317
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	3 cut(s)	636, 708, 966
TspGWI	ACGGA	2 cut(s)	262, 459
TspRI	CASTG	3 cut(s)	327, 466, 862
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	4 cut(s)	335, 727, 1048, 1054
XhoI	CTCGAG	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	4 cut(s)	570, 810, 912, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.