Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Forward (+)

24029717 .. 24035570

Gene Structure 5854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCACCTATGCAATTATACATGTGATAACTATTCGCTATGCTTCTCCAGGTTCTGCGGCATTCTCAATTCCTTTGTTTTGCGTAATGTAGAGGGAACACCATTGAGCACTGCAGGTCCACAACTGAAGACCAAATTAGCTTCAGAGCCATCAAAAATTAATTTAGCTCATCAAGATAGTGTGATTTTAAAACAGCAACAGAATAAAGGAGAACAATCTAGTCCGAAAGTTGGTTTGCCGGCTCCCAATGTGGTAAAAGATGTCAAAAGTGAAAGCAATGGCATAGGAGTTACTCATCAGCCTAACAAACATCCTGCAGACAAAGAGAAAGTTGCTCCTCTTCCTGCTAACAAAAAGAAGGTCCAGAGTGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGTCGTGCATCTGTGAAATCCAAGTCAAATTCTACAGCCGAAAATAGTAATTTGATTCCTACGCATACTGGAGCAAGTGCAGAGGCTCAAATTTGTGCTAGAGAAGCAGAAGCTGGTGTCATCAGCGACGATGATGATCAAGATGTTAATTTTAAGAGAGCTTCCGGTTCTGAAGTCACTAGGAAACGGAGGGTTGTCTTTGATTTCTCCGATGAAGACGAATGTGAAGATGCAGTCAATTTAGCATCACCAGAGTATCCAAAAGGAAAATCATGTCAAGAGCTCAAAGAAAGTAGCAAAACTTTGGTTCCACTTAAAACCAATTTGAACTTTGACGAGCAGGTAGAAGATAAACCAGAGGTCAAGGAAGAGATATCAGTTGACGGAAAATCTGACCCACCTTGCAGAGAAGATTCTACTGTTGTCAGCAAGGAAAGTAATTCTGGGATTATCCTGACAGAGAAAACAGACAGATCTGTTCCTGAAAAAGATGTGAACAAAATGGATAAGCTGGCCACTGCTGCTAAAACACAGATAGATGCTGGGATTATCCTAACTGAGAAAAAACGTAACTCTGTGCCTGAAAAAGGTGTGAACAAAATGGATAAACTGACCAACGGTGCATCAAGATCTCCTCAAAGAAGAAAAATTTTGAAGACACGGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAATATGGGAGGGCAAGGAGACAGAAGCAAAGAAAGCTGACAGCAGTGCAACAATGAAAGCTGACAGCAGTACAACAAAGAAAGCTGATAATACAGTTACCAGTGTTACGAACAGGCCTGCTGCAGCTCAGAAGTCAGTGGCGAACACTGGGCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTAAACAAGGATTCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

450

Amino Acids

48.7

Weight (kDa)

9.04

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	104, 745
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	4 cut(s)	406, 442, 504, 1062
AcuI	CTGAAG	3 cut(s)	126, 146, 606
AfaI	GTAC	1 cut(s)	1180
AfiI	CCNNNNNNNGG	2 cut(s)	230, 1001
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	742, 1069, 1342
AjnI	CCWGG	1 cut(s)	47
Alw21I	GWGCWC	2 cut(s)	110, 699
Alw26I	GTCTC	1 cut(s)	1121
AlwNI	CAGNNNCTG	2 cut(s)	54, 527
AoxI	GGCC	3 cut(s)	927, 1223, 1259
ApeKI	GCWGC	3 cut(s)	935, 1229, 1232
ApoI	RAATTY	4 cut(s)	406, 442, 504, 1062
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	116, 361, 1259
AsuHPI	GGTGA	1 cut(s)	654
AvaII	GGWCC	2 cut(s)	116, 361
BaeI	ACNNNNGTAYC	2 cut(s)	653, 686
BalI	TGGCCA	1 cut(s)	929
BanII	GRGCYC	1 cut(s)	699
BbsI	GAAGAC	3 cut(s)	134, 636, 1076
Bbv12I	GWGCWC	2 cut(s)	110, 699
BbvI	GCAGC	3 cut(s)	922, 1216, 1244
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	681
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	1121
BfaI	CTAG	3 cut(s)	219, 513, 594
BfmI	CTRYAG	4 cut(s)	111, 315, 447, 1230
BfuAI	ACCTGC	2 cut(s)	104, 745
BfuI	GTATCC	1 cut(s)	681
BglII	AGATCT	2 cut(s)	887, 1043
BisI	GCNGC	4 cut(s)	58, 936, 1230, 1233
BlsI	GCNGC	4 cut(s)	59, 937, 1231, 1234
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	116, 361
BmgT120I	GGNCC	3 cut(s)	116, 361, 1259
BmiI	GGNNCC	2 cut(s)	243, 723
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	1266
BmsI	GCATC	5 cut(s)	431, 634, 668, 943, 1046
BmuI	ACTGGG	1 cut(s)	1266
BpiI	GAAGAC	3 cut(s)	134, 636, 1076
BpmI	CTGGAG	3 cut(s)	31, 411, 504
BsaBI	GATNNNNATC	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 1001
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	487, 1209, 1261
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	230, 1001
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	963, 1095, 1250
BseNI	ACTGG	3 cut(s)	487, 1209, 1261
BseRI	GAGGAG	2 cut(s)	327, 1038
BseXI	GCAGC	3 cut(s)	922, 1216, 1244
BseYI	CCCAGC	1 cut(s)	956
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	929, 1225, 1261
BsiHKAI	GWGCWC	2 cut(s)	110, 699
BsiSI	CCGG	2 cut(s)	239, 579
BslI	CCNNNNNNNGG	2 cut(s)	230, 1001
BsmAI	GTCTC	1 cut(s)	1121
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	929, 1225, 1261
Bsp1286I	GDGCHC	2 cut(s)	110, 699
Bsp143I	GATC	3 cut(s)	550, 887, 1043
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	929, 1225, 1261
BspCNI	CTCAG	3 cut(s)	964, 1096, 1249
BspLI	GGNNCC	2 cut(s)	243, 723
BspMAI	CTGCAG	3 cut(s)	115, 319, 1234
BspMI	ACCTGC	2 cut(s)	104, 745
BspQI	GCTCTTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	487, 1209, 1261
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	3 cut(s)	550, 887, 1043
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	835, 1034, 1204
Bst6I	CTCTTC	4 cut(s)	345, 385, 777, 1087
BstC8I	GCNNGC	3 cut(s)	240, 927, 1227
BstDEI	CTNAG	4 cut(s)	972, 1104, 1236, 1314
BstENI	CCTNNNNNAGG	1 cut(s)	999
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	553, 890, 1046
BstMAI	GTCTC	1 cut(s)	1121
BstMBI	GATC	3 cut(s)	550, 887, 1043
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 935, 1142
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	4 cut(s)	111, 315, 447, 1230
BstV1I	GCAGC	3 cut(s)	922, 1216, 1244
BstV2I	GAAGAC	3 cut(s)	134, 636, 1076
BstX2I	RGATCY	2 cut(s)	887, 1043
BstYI	RGATCY	2 cut(s)	887, 1043
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	929, 1225, 1261
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	3 cut(s)	108, 930, 1159
BtsIMutI	CAGTG	6 cut(s)	108, 930, 1159, 1216, 1251, 1254
BveI	ACCTGC	2 cut(s)	104, 745
Cac8I	GCNNGC	3 cut(s)	240, 927, 1227
CaiI	CAGNNNCTG	2 cut(s)	54, 527
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	116, 361, 1259
Csp6I	GTAC	1 cut(s)	1179
CviAII	CATG	2 cut(s)	21, 687
CviQI	GTAC	1 cut(s)	1179
DdeI	CTNAG	4 cut(s)	972, 1104, 1236, 1314
DpnI	GATC	3 cut(s)	552, 889, 1045
DpnII	GATC	3 cut(s)	550, 887, 1043
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	927
Eam1104I	CTCTTC	4 cut(s)	345, 385, 777, 1087
EarI	CTCTTC	4 cut(s)	345, 385, 777, 1087
Ecl136II	GAGCTC	1 cut(s)	697
Eco147I	AGGCCT	1 cut(s)	1225
Eco24I	GRGCYC	1 cut(s)	699
Eco32I	GATATC	1 cut(s)	789
Eco47I	GGWCC	2 cut(s)	116, 361
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	126, 146, 606
EcoICRI	GAGCTC	1 cut(s)	697
EcoNI	CCTNNNNNAGG	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	699
FaeI	CATG	2 cut(s)	24, 690
FaiI	YATR	8 cut(s)	10, 18, 22, 40, 284, 480, 688, 1114
FatI	CATG	2 cut(s)	20, 686
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	58, 936, 1230, 1233
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	4 cut(s)	58, 936, 1230, 1233
FspBI	CTAG	3 cut(s)	219, 513, 594
GluI	GCNGC	4 cut(s)	58, 936, 1230, 1233
GsaI	CCCAGC	1 cut(s)	960
GsuI	CTGGAG	3 cut(s)	31, 411, 504
HaeIII	GGCC	3 cut(s)	929, 1225, 1261
HapII	CCGG	2 cut(s)	239, 579
Hin1II	CATG	2 cut(s)	24, 690
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	3 cut(s)	469, 827, 1310
HpaII	CCGG	2 cut(s)	239, 579
HphI	GGTGA	1 cut(s)	654
Hpy166II	GTNNAC	5 cut(s)	119, 796, 910, 1009, 1303
Hpy188I	TCNGA	6 cut(s)	145, 225, 586, 625, 808, 1239
Hpy188III	TCNNGA	9 cut(s)	173, 364, 390, 554, 692, 868, 896, 1041, 1342
Hpy8I	GTNNAC	5 cut(s)	119, 796, 910, 1009, 1303
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	352, 1339
HpyCH4III	ACNGT	3 cut(s)	835, 1034, 1204
HpyCH4IV	ACGT	2 cut(s)	982, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 935, 1142
HpyF3I	CTNAG	4 cut(s)	972, 1104, 1236, 1314
HpySE526I	ACGT	2 cut(s)	982, 1087
Hsp92II	CATG	2 cut(s)	24, 690
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	550, 887, 1043
LguI	GCTCTTC	1 cut(s)	385
LmnI	GCTCC	3 cut(s)	247, 340, 485
Lsp1109I	GCAGC	3 cut(s)	922, 1216, 1244
LweI	GCATC	5 cut(s)	431, 634, 668, 943, 1046
MaeI	CTAG	3 cut(s)	219, 513, 594
MaeII	ACGT	2 cut(s)	982, 1087
MaeIII	GTNAC	6 cut(s)	289, 589, 983, 1099, 1204, 1213
MalI	GATC	3 cut(s)	552, 889, 1045
MboI	GATC	3 cut(s)	550, 887, 1043
MflI	RGATCY	2 cut(s)	887, 1043
MhlI	GDGCHC	2 cut(s)	110, 699
MlsI	TGGCCA	1 cut(s)	929
MluNI	TGGCCA	1 cut(s)	929
Mox20I	TGGCCA	1 cut(s)	929
MroNI	GCCGGC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	929
MseI	TTAA	5 cut(s)	159, 188, 561, 567, 729
Msp20I	TGGCCA	1 cut(s)	929
MspI	CCGG	2 cut(s)	239, 579
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	518, 935, 1142
NaeI	GCCGGC	1 cut(s)	240
NdeII	GATC	3 cut(s)	550, 887, 1043
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	24, 690
NlaIV	GGNNCC	2 cut(s)	243, 723
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	1225
PciI	ACATGT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	469, 827, 1310
PkrI	GCNGC	4 cut(s)	59, 937, 1231, 1234
PscI	ACATGT	1 cut(s)	20
PshBI	ATTAAT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	956
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	243, 723
PspPI	GGNCC	3 cut(s)	116, 361, 1259
PstI	CTGCAG	3 cut(s)	115, 319, 1234
PstNI	CAGNNNCTG	2 cut(s)	54, 527
PsuI	RGATCY	2 cut(s)	887, 1043
RsaI	GTAC	1 cut(s)	1180
RsaNI	GTAC	1 cut(s)	1179
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	385
SaqAI	TTAA	5 cut(s)	159, 188, 561, 567, 729
SatI	GCNGC	4 cut(s)	58, 936, 1230, 1233
Sau3AI	GATC	3 cut(s)	550, 887, 1043
Sau96I	GGNCC	3 cut(s)	116, 361, 1259
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	110, 699
SfaNI	GCATC	5 cut(s)	431, 634, 668, 943, 1046
SfcI	CTRYAG	4 cut(s)	111, 315, 447, 1230
SinI	GGWCC	2 cut(s)	116, 361
SseBI	AGGCCT	1 cut(s)	1225
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	1327
SspMI	CTAG	3 cut(s)	219, 513, 594
SstI	GAGCTC	1 cut(s)	699
StuI	AGGCCT	1 cut(s)	1225
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	835, 1034, 1204
TaiI	ACGT	2 cut(s)	985, 1090
TatI	WGTACW	1 cut(s)	1178
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	469, 827, 1310
Tru1I	TTAA	5 cut(s)	159, 188, 561, 567, 729
Tru9I	TTAA	5 cut(s)	159, 188, 561, 567, 729
TscAI	CASTG	6 cut(s)	115, 937, 1159, 1216, 1251, 1261
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	3 cut(s)	935, 1229, 1232
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	5 cut(s)	387, 642, 1098, 1178, 1323
TspGWI	ACGGA	3 cut(s)	616, 813, 1090
TspRI	CASTG	6 cut(s)	115, 937, 1159, 1216, 1251, 1261
VpaK11BI	GGWCC	2 cut(s)	116, 361
VspI	ATTAAT	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	999
XapI	RAATTY	4 cut(s)	406, 442, 504, 1062
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	3 cut(s)	219, 513, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.