Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Forward (+)

24200460 .. 24208928

Gene Structure 8469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2583 bp

ATGCCCTCCCCCTTTCTCGCTAAGCCCACCTCTATCCCTCCTCCCAACTCCGCCGAGTCCTCCTCCTCCTCCGACGCCCCAAACGACGCCGTTCCCGCCTCCTCCTCCTCCTCGCGCTGCTCGGAAATGTGGAACTATCTCTGGATCCCCTTCCTGATTTCCCTCTCCAAGGAGCTCACCTCCGCCAAGGCGCAGTCCACGCCGACGATTCTGCTCCCGACTCAACTCGCTGGCTCCGACTCGTCGCAGAGGTGTACGGCGCTTGACCCCAAGCTCAATTACCGCCCGGTGATCGGTATTCTCAGCCATCCCGGCGACGGCGCCTCCGGTCGGCTCAGTAATGCTACCGGTACTTCCTACATCGCCGCCTCCTACGTCAAGTTCGTTGAATCTGCCGGCGCTCGCGTTATTCCGCTCATCTATAACGAGCCTTCTGATGTTCTCTTCCAGCTGCACTGCAGAAGCTCAATCTGGTCAATGGCATGCTTTTCACCGGAGGCTGGGCTAAAAGTGGTCGGTACTATGAAGTTGCTGCGAAAATATTTAAGATTTCCGCCTGATTTGCTTAGAAAGTTGAGTACAGATTGTATTGTCATGCAAAACCACCATTATGGTATCTCACCAGAGACGTTGGAAGAGAGCCAAGATCTATCAAGTTTTTTTAAGATCTTGACAACCAGTACTGATAAAGATGATAAGGTCTATGTCTCCACAGTACATGCATACCACTATCCGGTGACTGCCTTCCAATGGCATCTGGAGAAAAATGCTTTTGAATGGGGGTTACCGATGATTCCACACTCAGAAGATGCCATTCACGTGACTCAGCACATCGCAAACTTTTTTATCAGCGAGGCAAGGAAGTCATTAAACAGGCCACCTATTCAGGATGTCCTCGACAATCTCATCTACAATTACAGTCCAACATTTTGTGGGAAGGCAGGGAAGGGATACGATGAAGTTTACATCTTTAAACAACCTTCACTCGCACATTTGTTGCTCCAGGAGTTTGTGGAAAACCATGGAAACAGTTTGGAAGTGGTATATACTTTGTCTGGCCAGTTGAAGAACAATCCTGTGAGCTACCATGTAAGGTTCGTTTCGGGGCCTCAACTTGCAGAAGCAAAAGAAGAATTTGATGGCAACTGCTCCGTTGGGGTTTACAGTGTGCAACCTTGCATTCCAAAGGATCCAGCTACAATTTGGAATGCAGAATTTGTACAAGCAGAGGAGCTCCATACGCAGGCTCCAACAGTTGAAAATTGCTTGAGAGATAACAGGTTCTGCGGCATTCTCAATTCCTTTGTTTTGCGTAATGTAGAGGGAACACCATTGAGCACTGCAGGTCCACAACTGAAGACCAAATTAGCTTCAGAGCCATCAAAAATTAATTTAGCTCATCAAGATAGTGTGATTTTAAAACAGCAACAGAATAAAGGAGAACAATCTAGTCCGAAAGTTGGTTTGCCGGCTCCCAATGTGGTAAAAGATGTCAAAAGTGAAAGCAATGGCATAGGAGTTACTCATCAGCCTAACAAACATCCTGCAGACAAAGAGAAAGTTGCTCCTCTTCCTGCTAACAAAAAGAAGGTCCAGAGTGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGTCGTGCATCTGTGAAATCCAAGTCAAATTCTACAGCCGAAAATAGTAATTTGATTCCTACGCATACTGGAGCAAGTGCAGAGGCTCAAATTTGTGCTAGAGAAGCAGAAGCTGGTGTCATCAGCGACGATGATGATCAAGATGTTAATTTTAAGAGAGCTTCCGGTTCTGAAGTCACTAGGAAACGGAGGGTTGTCTTTGATTTCTCCGATGAAGACGAATGTGAAGATGCAGTCAATTTAGCATCCCCAGAGTATCCAAAAGGAAAATCATGTCAAGAGCTCAAAGAAAGTAGCAAAACTTTGGTTGCACTTAAAACCAATTTGAACTTTGACGAGCAGGTAGAAGATAAACCAGAGGTCAAGGAAGAGATATCAGTTGACGGAAAATCTGACCCACCTTGCAGAGAAGATTCTACTGTTGTCAGCAAGGAAAGTAATTCTGGGATTATCCTGACAGAGAAAACAGACAGATCTGTTCCTGAAAAAGATGTGAACAAAATGGATAAGCTGGCCACTGCTGCTAAAACACAGATAGATGCTGGGATTATCCTAACTGAGAAAAAACGTAACTCTGTGCCTGAAAAAGGTGTGAACAAAATGGATAAACTGACCAACGGTGCATCAAGATCTCCTCAAAGAAGAAAAATTTTGAAGACACGGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAATATGGGAGGGCAAGGAGACAGAAGCAAAGAAAGCTGACAGCAGTGCAACAATGAAAGCTGACAGCAGTACAACAAAGAAAGCTGATAATACAGTTACCAGTGTTACGAACAGGCCTGCCGCAGCTCAGAAGTCAGTGGCGAACACTGGGCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTAAACAAGGATCCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

860

Amino Acids

93.94

Weight (kDa)

7.81

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1334, 1975
AccB1I	GGYRCC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	415
AccII	CGCG	2 cut(s)	115, 405
AciI	CCGC	9 cut(s)	51, 96, 183, 283, 366, 413, 554, 1287, 2460
AclWI	GGATC	6 cut(s)	139, 152, 1184, 1197, 2534, 2547
AcoI	YGGCCR	2 cut(s)	1057, 2157
AcsI	RAATTY	6 cut(s)	1133, 1214, 1636, 1672, 1734, 2292
AcuI	CTGAAG	3 cut(s)	1356, 1376, 1836
AcvI	CACGTG	1 cut(s)	820
AcyI	GRCGYC	3 cut(s)	75, 87, 321
AfaI	GTAC	8 cut(s)	256, 352, 520, 580, 682, 717, 1221, 2410
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	7 cut(s)	389, 776, 1066, 1259, 1972, 2299, 2572
AjnI	CCWGG	1 cut(s)	1002
Alw21I	GWGCWC	4 cut(s)	177, 1236, 1340, 1929
Alw26I	GTCTC	3 cut(s)	620, 712, 2351
AlwI	GGATC	6 cut(s)	139, 152, 1184, 1197, 2534, 2547
AlwNI	CAGNNNCTG	2 cut(s)	1284, 1757
AoxI	GGCC	6 cut(s)	875, 1057, 1106, 2157, 2453, 2489
ApeKI	GCWGC	5 cut(s)	117, 451, 532, 2165, 2462
ApoI	RAATTY	6 cut(s)	1133, 1214, 1636, 1672, 1734, 2292
ArsI	GACNNNNNNTTYG	2 cut(s)	1575, 1607
AseI	ATTAAT	1 cut(s)	1389
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	5 cut(s)	117, 193, 262, 323, 401
AspS9I	GGNCC	4 cut(s)	1106, 1346, 1591, 2489
AsuC2I	CCSGG	2 cut(s)	287, 312
AsuHPI	GGTGA	5 cut(s)	169, 301, 483, 612, 748
AvaII	GGWCC	2 cut(s)	1346, 1591
BalI	TGGCCA	2 cut(s)	1059, 2159
BamHI	GGATCC	3 cut(s)	144, 1189, 2539
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	3 cut(s)	177, 1236, 1929
BbrPI	CACGTG	1 cut(s)	820
BbsI	GAAGAC	3 cut(s)	1364, 1866, 2306
Bbv12I	GWGCWC	4 cut(s)	177, 1236, 1340, 1929
BbvI	GCAGC	5 cut(s)	104, 438, 519, 2152, 2474
BccI	CCATC	3 cut(s)	315, 1133, 1387
BceAI	ACGGC	3 cut(s)	74, 273, 334
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	1004
BciVI	GTATCC	2 cut(s)	944, 1911
BclI	TGATCA	1 cut(s)	1780
BcnI	CCSGG	2 cut(s)	287, 312
BcoDI	GTCTC	3 cut(s)	620, 712, 2351
BfaI	CTAG	3 cut(s)	1449, 1743, 1824
BfmI	CTRYAG	4 cut(s)	457, 1341, 1545, 1677
BfoI	RGCGCY	3 cut(s)	263, 324, 402
BfuAI	ACCTGC	2 cut(s)	1334, 1975
BfuI	GTATCC	2 cut(s)	944, 1911
BglI	GCCNNNNNGGC	1 cut(s)	312
BglII	AGATCT	4 cut(s)	646, 666, 2117, 2273
BisI	GCNGC	8 cut(s)	118, 366, 452, 533, 1288, 2166, 2460, 2463
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	8 cut(s)	119, 367, 453, 534, 1289, 2167, 2461, 2464
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	3 cut(s)	287, 312, 1004
Bme18I	GGWCC	2 cut(s)	1346, 1591
BmgT120I	GGNCC	4 cut(s)	1106, 1346, 1591, 2489
BmiI	GGNNCC	8 cut(s)	146, 235, 322, 1107, 1191, 1248, 1473, 2541
BmrFI	CCNGG	3 cut(s)	287, 312, 1004
BmrI	ACTGGG	1 cut(s)	2496
BmsI	GCATC	7 cut(s)	763, 799, 1661, 1864, 1898, 2173, 2276
BmuI	ACTGGG	1 cut(s)	2496
BpiI	GAAGAC	3 cut(s)	1364, 1866, 2306
BplI	GAGNNNNNCTC	4 cut(s)	47, 79, 164, 196
BpmI	CTGGAG	4 cut(s)	779, 986, 1641, 1734
Bpu10I	CCTNAGC	1 cut(s)	2544
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	1288
BpuMI	CCSGG	2 cut(s)	287, 312
BsaAI	YACGTR	1 cut(s)	820
BsaBI	GATNNNNATC	1 cut(s)	1779
BsaHI	GRCGYC	3 cut(s)	75, 87, 321
BsaJI	CCNNGG	3 cut(s)	168, 186, 1021
BsaWI	WCCGGW	5 cut(s)	326, 347, 493, 733, 1808
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 1231, 1261
Bse118I	RCCGGY	3 cut(s)	347, 395, 1468
Bse1I	ACTGG	5 cut(s)	678, 1060, 1717, 2439, 2491
Bse3DI	GCAATG	1 cut(s)	1513
Bse8I	GATNNNNATC	1 cut(s)	1779
BseBI	CCWGG	1 cut(s)	1004
BseDI	CCNNGG	3 cut(s)	168, 186, 1021
BseGI	GGATG	4 cut(s)	307, 895, 1540, 1889
BseJI	GATNNNNATC	1 cut(s)	1779
BseMI	GCAATG	1 cut(s)	1513
BseMII	CTCAG	7 cut(s)	316, 349, 816, 839, 2193, 2325, 2480
BseNI	ACTGG	5 cut(s)	678, 1060, 1717, 2439, 2491
BseXI	GCAGC	5 cut(s)	104, 438, 519, 2152, 2474
BseYI	CCCAGC	2 cut(s)	500, 2186
BsgI	GTGCAG	2 cut(s)	437, 1743
Bsh1236I	CGCG	2 cut(s)	115, 405
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	6 cut(s)	877, 1059, 1108, 2159, 2455, 2491
BshNI	GGYRCC	1 cut(s)	320
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	4 cut(s)	177, 1236, 1340, 1929
BsiSI	CCGG	9 cut(s)	287, 312, 327, 348, 396, 494, 734, 1469, 1809
BsmAI	GTCTC	3 cut(s)	620, 712, 2351
BsmBI	CGTCTC	1 cut(s)	620
BsmI	GAATGC	3 cut(s)	1179, 1213, 1290
BsnI	GGCC	6 cut(s)	877, 1059, 1108, 2159, 2455, 2491
Bsp1286I	GDGCHC	4 cut(s)	177, 1236, 1340, 1929
Bsp1407I	TGTACA	1 cut(s)	1219
Bsp143I	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
Bsp1720I	GCTNAGC	1 cut(s)	21
Bsp19I	CCATGG	1 cut(s)	1021
BspACI	CCGC	9 cut(s)	51, 96, 183, 283, 366, 413, 554, 1287, 2460
BspANI	GGCC	6 cut(s)	877, 1059, 1108, 2159, 2455, 2491
BspCNI	CTCAG	7 cut(s)	315, 348, 815, 838, 2194, 2326, 2479
BspFNI	CGCG	2 cut(s)	115, 405
BspLI	GGNNCC	8 cut(s)	146, 235, 322, 1107, 1191, 1248, 1473, 2541
BspMAI	CTGCAG	3 cut(s)	461, 1345, 1549
BspMI	ACCTGC	2 cut(s)	1334, 1975
BspPI	GGATC	6 cut(s)	139, 152, 1184, 1197, 2534, 2547
BspQI	GCTCTTC	1 cut(s)	1615
BspT107I	GGYRCC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	1513
BsrFI	RCCGGY	3 cut(s)	347, 395, 1468
BsrGI	TGTACA	1 cut(s)	1219
BsrI	ACTGG	5 cut(s)	678, 1060, 1717, 2439, 2491
BssAI	RCCGGY	3 cut(s)	347, 395, 1468
BssECI	CCNNGG	3 cut(s)	168, 186, 1021
BssMI	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
BssNI	GRCGYC	3 cut(s)	75, 87, 321
BssT1I	CCWWGG	3 cut(s)	168, 186, 1021
Bst2UI	CCWGG	1 cut(s)	1004
Bst4CI	ACNGT	8 cut(s)	715, 920, 1031, 1166, 1255, 2065, 2264, 2434
Bst6I	CTCTTC	6 cut(s)	449, 630, 1575, 1615, 2007, 2317
BstACI	GRCGYC	3 cut(s)	75, 87, 321
BstAUI	TGTACA	1 cut(s)	1219
BstBAI	YACGTR	1 cut(s)	820
BstC8I	GCNNGC	8 cut(s)	232, 397, 403, 484, 1245, 1470, 2157, 2457
BstDSI	CCRYGG	1 cut(s)	1021
BstEII	GGTNACC	1 cut(s)	783
BstENI	CCTNNNNNAGG	3 cut(s)	167, 2229, 2547
BstF5I	GGATG	4 cut(s)	307, 895, 1540, 1889
BstFNI	CGCG	2 cut(s)	115, 405
BstH2I	RGCGCY	3 cut(s)	263, 324, 402
BstHHI	GCGC	5 cut(s)	117, 193, 262, 323, 401
BstKTI	GATC	9 cut(s)	147, 294, 649, 669, 1192, 1783, 2120, 2276, 2542
BstMAI	GTCTC	3 cut(s)	620, 712, 2351
BstMBI	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 199, 312, 562, 1240, 1748, 2165, 2372
BstNI	CCWGG	1 cut(s)	1004
BstNSI	RCATGY	2 cut(s)	486, 722
BstPI	GGTNACC	1 cut(s)	783
BstSCI	CCNGG	3 cut(s)	285, 310, 1002
BstSFI	CTRYAG	4 cut(s)	457, 1341, 1545, 1677
BstUI	CGCG	2 cut(s)	115, 405
BstV1I	GCAGC	5 cut(s)	104, 438, 519, 2152, 2474
BstV2I	GAAGAC	3 cut(s)	1364, 1866, 2306
BstX2I	RGATCY	7 cut(s)	144, 646, 666, 1189, 2117, 2273, 2539
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	7 cut(s)	144, 646, 666, 1189, 2117, 2273, 2539
BsuI	GTATCC	2 cut(s)	944, 1911
BsuRI	GGCC	6 cut(s)	877, 1059, 1108, 2159, 2455, 2491
BtgI	CCRYGG	1 cut(s)	1021
BtgZI	GCGATG	2 cut(s)	346, 817
BtsCI	GGATG	4 cut(s)	307, 895, 1540, 1889
BtsI	GCAGTG	4 cut(s)	454, 1338, 2160, 2389
BtsIMutI	CAGTG	8 cut(s)	454, 1171, 1338, 2160, 2389, 2446, 2481, 2484
BveI	ACCTGC	2 cut(s)	1334, 1975
Cac8I	GCNNGC	8 cut(s)	232, 397, 403, 484, 1245, 1470, 2157, 2457
CaiI	CAGNNNCTG	2 cut(s)	1284, 1757
CfoI	GCGC	5 cut(s)	117, 193, 262, 323, 401
Cfr10I	RCCGGY	3 cut(s)	347, 395, 1468
Cfr13I	GGNCC	4 cut(s)	1106, 1346, 1591, 2489
CseI	GACGC	2 cut(s)	83, 95
Csp6I	GTAC	8 cut(s)	255, 351, 519, 579, 681, 716, 1220, 2409
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	6 cut(s)	483, 595, 719, 1022, 1088, 1917
CviQI	GTAC	8 cut(s)	255, 351, 519, 579, 681, 716, 1220, 2409
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	9 cut(s)	146, 293, 648, 668, 1191, 1782, 2119, 2275, 2541
DpnII	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
DraI	TTTAAA	2 cut(s)	973, 1419
EaeI	YGGCCR	2 cut(s)	1057, 2157
Eam1104I	CTCTTC	6 cut(s)	449, 630, 1575, 1615, 2007, 2317
EarI	CTCTTC	6 cut(s)	449, 630, 1575, 1615, 2007, 2317
EciI	GGCGGA	3 cut(s)	40, 172, 543
Ecl136II	GAGCTC	3 cut(s)	175, 1234, 1927
Eco130I	CCWWGG	3 cut(s)	168, 186, 1021
Eco147I	AGGCCT	1 cut(s)	2455
Eco24I	GRGCYC	3 cut(s)	177, 1236, 1929
Eco32I	GATATC	1 cut(s)	2019
Eco47I	GGWCC	2 cut(s)	1346, 1591
Eco53kI	GAGCTC	3 cut(s)	175, 1234, 1927
Eco57I	CTGAAG	3 cut(s)	1356, 1376, 1836
Eco72I	CACGTG	1 cut(s)	820
Eco91I	GGTNACC	1 cut(s)	783
EcoICRI	GAGCTC	3 cut(s)	175, 1234, 1927
EcoNI	CCTNNNNNAGG	3 cut(s)	167, 2229, 2547
EcoO109I	RGGNCCY	1 cut(s)	1106
EcoO65I	GGTNACC	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	1002
EcoRV	GATATC	1 cut(s)	2019
EcoT14I	CCWWGG	3 cut(s)	168, 186, 1021
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	3 cut(s)	177, 1236, 1929
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
ErhI	CCWWGG	3 cut(s)	168, 186, 1021
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	6 cut(s)	486, 598, 722, 1025, 1091, 1920
FatI	CATG	6 cut(s)	482, 594, 718, 1021, 1087, 1916
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	1780
Fnu4HI	GCNGC	8 cut(s)	118, 366, 452, 533, 1288, 2166, 2460, 2463
FokI	GGATG	4 cut(s)	294, 902, 1527, 1876
FriOI	GRGCYC	3 cut(s)	177, 1236, 1929
Fsp4HI	GCNGC	8 cut(s)	118, 366, 452, 533, 1288, 2166, 2460, 2463
FspBI	CTAG	3 cut(s)	1449, 1743, 1824
GlaI	GCGC	5 cut(s)	116, 192, 261, 322, 400
GluI	GCNGC	8 cut(s)	118, 366, 452, 533, 1288, 2166, 2460, 2463
GsaI	CCCAGC	2 cut(s)	504, 2190
GsuI	CTGGAG	4 cut(s)	779, 986, 1641, 1734
HaeII	RGCGCY	3 cut(s)	263, 324, 402
HaeIII	GGCC	6 cut(s)	877, 1059, 1108, 2159, 2455, 2491
HapII	CCGG	9 cut(s)	287, 312, 327, 348, 396, 494, 734, 1469, 1809
HgaI	GACGC	2 cut(s)	83, 95
HhaI	GCGC	5 cut(s)	117, 193, 262, 323, 401
Hin1I	GRCGYC	3 cut(s)	75, 87, 321
Hin1II	CATG	6 cut(s)	486, 598, 722, 1025, 1091, 1920
Hin6I	GCGC	5 cut(s)	115, 191, 260, 321, 399
HinP1I	GCGC	5 cut(s)	115, 191, 260, 321, 399
HincII	GTYRAC	1 cut(s)	2026
HindII	GTYRAC	1 cut(s)	2026
HinfI	GANTC	9 cut(s)	56, 208, 220, 239, 389, 793, 823, 1699, 2057
HpaII	CCGG	9 cut(s)	287, 312, 327, 348, 396, 494, 734, 1469, 1809
HphI	GGTGA	5 cut(s)	169, 301, 483, 612, 748
Hpy166II	GTNNAC	9 cut(s)	198, 255, 964, 1162, 1349, 2026, 2140, 2239, 2533
Hpy8I	GTNNAC	9 cut(s)	198, 255, 964, 1162, 1349, 2026, 2140, 2239, 2533
Hpy99I	CGWCG	6 cut(s)	77, 89, 208, 247, 320, 1775
HpyAV	CCTTC	8 cut(s)	160, 441, 754, 931, 940, 990, 1582, 2569
HpyCH4III	ACNGT	8 cut(s)	715, 920, 1031, 1166, 1255, 2065, 2264, 2434
HpyCH4IV	ACGT	5 cut(s)	375, 629, 819, 2212, 2317
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 199, 312, 562, 1240, 1748, 2165, 2372
HpySE526I	ACGT	5 cut(s)	375, 629, 819, 2212, 2317
Hsp92I	GRCGYC	3 cut(s)	75, 87, 321
Hsp92II	CATG	6 cut(s)	486, 598, 722, 1025, 1091, 1920
HspAI	GCGC	5 cut(s)	115, 191, 260, 321, 399
KasI	GGCGCC	1 cut(s)	320
KroI	GCCGGC	2 cut(s)	395, 1468
KroNI	GCCGGC	2 cut(s)	397, 1470
Ksp22I	TGATCA	1 cut(s)	1780
Kzo9I	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
LguI	GCTCTTC	1 cut(s)	1615
Lsp1109I	GCAGC	5 cut(s)	104, 438, 519, 2152, 2474
LweI	GCATC	7 cut(s)	763, 799, 1661, 1864, 1898, 2173, 2276
MaeI	CTAG	3 cut(s)	1449, 1743, 1824
MaeII	ACGT	5 cut(s)	375, 629, 819, 2212, 2317
MaeIII	GTNAC	9 cut(s)	736, 783, 820, 1519, 1819, 2213, 2329, 2434, 2443
MalI	GATC	9 cut(s)	146, 293, 648, 668, 1191, 1782, 2119, 2275, 2541
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
MflI	RGATCY	7 cut(s)	144, 646, 666, 1189, 2117, 2273, 2539
MhlI	GDGCHC	4 cut(s)	177, 1236, 1340, 1929
MlsI	TGGCCA	2 cut(s)	1059, 2159
MluNI	TGGCCA	2 cut(s)	1059, 2159
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	4 cut(s)	65, 214, 233, 817
MmeI	TCCRAC	5 cut(s)	96, 261, 612, 947, 1274
Mox20I	TGGCCA	2 cut(s)	1059, 2159
Mph1103I	ATGCAT	1 cut(s)	724
MroNI	GCCGGC	2 cut(s)	395, 1468
MscI	TGGCCA	2 cut(s)	1059, 2159
MseI	TTAA	9 cut(s)	545, 663, 869, 972, 1389, 1418, 1791, 1797, 1959
MslI	CAYNNNNRTG	2 cut(s)	609, 818
Msp20I	TGGCCA	2 cut(s)	1059, 2159
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	9 cut(s)	287, 312, 327, 348, 396, 494, 734, 1469, 1809
MspR9I	CCNGG	3 cut(s)	287, 312, 1004
Mva1269I	GAATGC	3 cut(s)	1179, 1213, 1290
MvaI	CCWGG	1 cut(s)	1004
MvnI	CGCG	2 cut(s)	115, 405
MwoI	GCNNNNNNNGC	8 cut(s)	95, 199, 312, 562, 1240, 1748, 2165, 2372
NaeI	GCCGGC	2 cut(s)	397, 1470
NarI	GGCGCC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	287, 312
NcoI	CCATGG	1 cut(s)	1021
NdeII	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
NgoMIV	GCCGGC	2 cut(s)	395, 1468
NlaIII	CATG	6 cut(s)	486, 598, 722, 1025, 1091, 1920
NlaIV	GGNNCC	8 cut(s)	146, 235, 322, 1107, 1191, 1248, 1473, 2541
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	736, 820, 1819
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	2 cut(s)	486, 722
PaeI	GCATGC	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	2455
PciSI	GCTCTTC	1 cut(s)	1615
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 234, 381
PctI	GAATGC	3 cut(s)	1179, 1213, 1290
PdiI	GCCGGC	2 cut(s)	397, 1470
PfeI	GAWTC	5 cut(s)	208, 389, 793, 1699, 2057
PfoI	TCCNGGA	1 cut(s)	1002
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	8 cut(s)	119, 367, 453, 534, 1289, 2167, 2461, 2464
PleI	GAGTC	4 cut(s)	64, 214, 233, 817
PluTI	GGCGCC	1 cut(s)	324
PmaCI	CACGTG	1 cut(s)	820
PmlI	CACGTG	1 cut(s)	820
PpsI	GAGTC	4 cut(s)	64, 214, 233, 817
Ppu21I	YACGTR	1 cut(s)	820
PshBI	ATTAAT	1 cut(s)	1389
Psp124BI	GAGCTC	3 cut(s)	177, 1236, 1929
Psp6I	CCWGG	1 cut(s)	1002
PspCI	CACGTG	1 cut(s)	820
PspEI	GGTNACC	1 cut(s)	783
PspFI	CCCAGC	2 cut(s)	500, 2186
PspGI	CCWGG	1 cut(s)	1002
PspN4I	GGNNCC	8 cut(s)	146, 235, 322, 1107, 1191, 1248, 1473, 2541
PspPI	GGNCC	4 cut(s)	1106, 1346, 1591, 2489
PstI	CTGCAG	3 cut(s)	461, 1345, 1549
PstNI	CAGNNNCTG	2 cut(s)	1284, 1757
PsuI	RGATCY	7 cut(s)	144, 646, 666, 1189, 2117, 2273, 2539
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	8 cut(s)	256, 352, 520, 580, 682, 717, 1221, 2410
RsaNI	GTAC	8 cut(s)	255, 351, 519, 579, 681, 716, 1220, 2409
RseI	CAYNNNNRTG	2 cut(s)	609, 818
SacI	GAGCTC	3 cut(s)	177, 1236, 1929
SapI	GCTCTTC	1 cut(s)	1615
SaqAI	TTAA	9 cut(s)	545, 663, 869, 972, 1389, 1418, 1791, 1797, 1959
SatI	GCNGC	8 cut(s)	118, 366, 452, 533, 1288, 2166, 2460, 2463
Sau3AI	GATC	9 cut(s)	144, 291, 646, 666, 1189, 1780, 2117, 2273, 2539
Sau96I	GGNCC	4 cut(s)	1106, 1346, 1591, 2489
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	4 cut(s)	65, 214, 233, 817
ScrFI	CCNGG	3 cut(s)	287, 312, 1004
SduI	GDGCHC	4 cut(s)	177, 1236, 1340, 1929
SfaNI	GCATC	7 cut(s)	763, 799, 1661, 1864, 1898, 2173, 2276
SfcI	CTRYAG	4 cut(s)	457, 1341, 1545, 1677
SfoI	GGCGCC	1 cut(s)	322
SinI	GGWCC	2 cut(s)	1346, 1591
SmiMI	CAYNNNNRTG	2 cut(s)	609, 818
SmlI	CTYRAG	1 cut(s)	1267
SmoI	CTYRAG	1 cut(s)	1267
SphI	GCATGC	1 cut(s)	486
SseBI	AGGCCT	1 cut(s)	2455
SsiI	CCGC	9 cut(s)	51, 96, 183, 283, 366, 413, 554, 1287, 2460
SspDI	GGCGCC	1 cut(s)	320
SspI	AATATT	2 cut(s)	542, 2557
SspMI	CTAG	3 cut(s)	1449, 1743, 1824
SstI	GAGCTC	3 cut(s)	177, 1236, 1929
StuI	AGGCCT	1 cut(s)	2455
StyD4I	CCNGG	3 cut(s)	285, 310, 1002
StyI	CCWWGG	3 cut(s)	168, 186, 1021
TaaI	ACNGT	8 cut(s)	715, 920, 1031, 1166, 1255, 2065, 2264, 2434
TaiI	ACGT	5 cut(s)	378, 632, 822, 2215, 2320
TaqI	TCGA	1 cut(s)	897
TatI	WGTACW	5 cut(s)	578, 680, 715, 1219, 2408
TauI	GCSGC	3 cut(s)	368, 1290, 2462
TfiI	GAWTC	5 cut(s)	208, 389, 793, 1699, 2057
Tru1I	TTAA	9 cut(s)	545, 663, 869, 972, 1389, 1418, 1791, 1797, 1959
Tru9I	TTAA	9 cut(s)	545, 663, 869, 972, 1389, 1418, 1791, 1797, 1959
TscAI	CASTG	8 cut(s)	461, 1171, 1345, 2167, 2389, 2446, 2481, 2491
TseFI	GTSAC	3 cut(s)	736, 820, 1819
TseI	GCWGC	5 cut(s)	117, 451, 532, 2165, 2462
Tsp45I	GTSAC	3 cut(s)	736, 820, 1819
TspDTI	ATGAA	7 cut(s)	539, 972, 1617, 1872, 2328, 2408, 2553
TspGWI	ACGGA	4 cut(s)	1141, 1846, 2043, 2320
TspRI	CASTG	8 cut(s)	461, 1171, 1345, 2167, 2389, 2446, 2481, 2491
VpaK11BI	GGWCC	2 cut(s)	1346, 1591
VspI	ATTAAT	1 cut(s)	1389
XagI	CCTNNNNNAGG	3 cut(s)	167, 2229, 2547
XapI	RAATTY	6 cut(s)	1133, 1214, 1636, 1672, 1734, 2292
XceI	RCATGY	2 cut(s)	486, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1200
XspI	CTAG	3 cut(s)	1449, 1743, 1824
ZrmI	AGTACT	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.