RchiOBHm_Chr5g0030521

nucleotide-excision repair, DNA gap filling

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
24155960 .. 24160503
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30985

Sequence Viewer

Length: 1737 bp
ATGCCGGAGCATCTTCAGAGATGGTTGAACATTTTACGCCATGAACATACCAAGTCAATCTCAAAACAGATGCAAGTTTATGCCTTTGAATTAGAATATGGATTGGTTGTAAACCTAAATCCAATGATGCAAAGAGCTGTTATATACAGGTTGCTCCAGGAGTTTGTGGAAAACCATGGAAACAGTTTGGAAGTGGTATATACTTTGTCTGGCCAGTTGAAGAACAATCCTGTGAGCTACCATGTAAGGTTCGTTTCGGGGCCTCAACTTGCAGAAGCAAAAGAAGAATTTGATGGCAACTGCTCCGTTGGGGTTTACAGTGTGCAACCTTGCATTCCAAAGGATCCAGCTACAATTTGGAATGCAGAATTTGTACAAGCAGAGGAGCTCCATACGCAGGCTCCAACAGTTGAAAATTGCTTGAGAGATAACAGGTTCTGCGGCATTCTCAATTCCTTTGTTTTGCGTAATGTAGAGGGAACACCATTGAGCACTGCAGGTCCACAACTGAAGACCAAATTAGCTTCAGAGCCATCAAAAATTAATTTAGCTCATCAAGATAGTGTGATTTTAAAACAGCAACAGAATAAAGGAGAACAATCTAGTCCGAAAGTTGGTTTGCCGGCTCCCAATGTGGTAAAAGATGTCAAAAGTGAAAGCAATGGCATAGGAGTTACTCATCAGCCTAACAAACATCCTGCAGACAAAGAGAAAGTTGCTCCTCTTCCTGCTAACAAAAAGAAGGTCCAGAGTGATAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTGTGGGGTCGTGCATCTGTGAAATCCAAGTCAAATTCTACAGCCGAAAATAGTAATTTGATTCCTACGCATACTGGAGCAAGTGCAGAGGCTCAAATTTGTGCTAGAGAAGCAGAAGCTGGTGTCATCAGCGACGATGATGATCAAGATGTTAATTTTAAGAGAGCTTCCGGTTCTGAAGTCACTAGGAAACGGAGGGTTGTCTTTGATTTCTCCGATGAAGACGAATGTGAAGATGCAGTCAATTTAGCATCCCCAGAGTATCCAAAAGGAAAATCATGTCAAGAGCTCAAAGAAAGTAGCAAAACTTTGGTTGCACTTAAAACCAATTTGAACTTTGACGAGCAGGTAGAAGATAAACCAGAGGTCAAGGAAGAGATATCAGTTGACGGAAAATCTGACCCACCTTGCAGAGAAGATTCTACTGTTGTCAGCAAGGAAAGTAATTCTGGGATTATCCTGACAGAGAAAACAGACAGATCTGTTCCTGAAAAAGATGTGAACAAAATGGATAAGCTGGCCACTGCTGCTAAAACACAGATAGATGCTGGGATTATCCTAACTGAGAAAAAACGTAACTCTGTGCCTGAAAAAGGTGTGAACAAAATGGATAAACTGACCAACGGTGCATCAAGATCTCCTCAAAGAAGAAAAATTTTGAAGACACGGATTGATGAACGTGGAAGAGAAGTAACTGAGGTAATATGGGAGGGCAAGGAGACAGAAGCAAAGAAAGCTGACAGCAGTGCAACAATGAAAGCTGACAGCAGTACAACAAAGAAAGCTGATAATACAGTTACCAGTGTTACGAACAGGCCTGCCGCAGCTCAGAAGTCAGTGGCGAACACTGGGCCGAAAAATCAAACTGCCAAAGCAGGAGGCAAGAAAGCAGTAAACAAGGATCCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAA

Protein Analysis

578

Amino Acids

63.33

Weight (kDa)

8.62

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 488, 1129
AciI CCGC 2 cut(s) 441, 1614
AclWI GGATC 4 cut(s) 338, 351, 1688, 1701
AcoI YGGCCR 2 cut(s) 211, 1311
AcsI RAATTY 6 cut(s) 287, 368, 790, 826, 888, 1446
AcuI CTGAAG 3 cut(s) 510, 530, 990
AfaI GTAC 2 cut(s) 375, 1564
AfiI CCNNNNNNNGG 4 cut(s) 397, 614, 1385, 1703
AgsI TTSAA 7 cut(s) 28, 89, 220, 413, 1126, 1453, 1726
AjnI CCWGG 1 cut(s) 156
Alw21I GWGCWC 3 cut(s) 390, 494, 1083
Alw26I GTCTC 1 cut(s) 1505
AlwI GGATC 4 cut(s) 338, 351, 1688, 1701
AlwNI CAGNNNCTG 2 cut(s) 438, 911
AoxI GGCC 5 cut(s) 211, 260, 1311, 1607, 1643
ApeKI GCWGC 2 cut(s) 1319, 1616
ApoI RAATTY 6 cut(s) 287, 368, 790, 826, 888, 1446
ArsI GACNNNNNNTTYG 2 cut(s) 729, 761
AseI ATTAAT 1 cut(s) 543
AspS9I GGNCC 4 cut(s) 260, 500, 745, 1643
AvaII GGWCC 2 cut(s) 500, 745
BalI TGGCCA 2 cut(s) 213, 1313
BamHI GGATCC 2 cut(s) 343, 1693
BanII GRGCYC 2 cut(s) 390, 1083
BbsI GAAGAC 3 cut(s) 518, 1020, 1460
Bbv12I GWGCWC 3 cut(s) 390, 494, 1083
BbvI GCAGC 2 cut(s) 1306, 1628
BccI CCATC 3 cut(s) 15, 287, 541
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 1065
BclI TGATCA 1 cut(s) 934
BcoDI GTCTC 1 cut(s) 1505
BfaI CTAG 3 cut(s) 603, 897, 978
BfmI CTRYAG 3 cut(s) 495, 699, 831
BfuAI ACCTGC 2 cut(s) 488, 1129
BfuI GTATCC 1 cut(s) 1065
BglII AGATCT 2 cut(s) 1271, 1427
BisI GCNGC 4 cut(s) 442, 1320, 1614, 1617
BlsI GCNGC 4 cut(s) 443, 1321, 1615, 1618
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 2 cut(s) 500, 745
BmgT120I GGNCC 4 cut(s) 260, 500, 745, 1643
BmiI GGNNCC 5 cut(s) 261, 345, 402, 627, 1695
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 1650
BmsI GCATC 8 cut(s) 19, 60, 117, 815, 1018, 1052, 1327, 1430
BmuI ACTGGG 1 cut(s) 1650
BpiI GAAGAC 3 cut(s) 518, 1020, 1460
BpmI CTGGAG 3 cut(s) 140, 795, 888
Bpu10I CCTNAGC 1 cut(s) 1698
BpuEI CTTGAG 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 962
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 4 cut(s) 397, 614, 1385, 1703
Bse118I RCCGGY 1 cut(s) 622
Bse1I ACTGG 4 cut(s) 214, 871, 1593, 1645
Bse3DI GCAATG 1 cut(s) 667
Bse8I GATNNNNATC 1 cut(s) 933
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 694, 1043
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 4 cut(s) 397, 614, 1385, 1703
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 1347, 1479, 1634
BseNI ACTGG 4 cut(s) 214, 871, 1593, 1645
BseRI GAGGAG 3 cut(s) 398, 711, 1422
BseXI GCAGC 2 cut(s) 1306, 1628
BseYI CCCAGC 1 cut(s) 1340
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 5 cut(s) 213, 262, 1313, 1609, 1645
BsiHKAI GWGCWC 3 cut(s) 390, 494, 1083
BsiSI CCGG 3 cut(s) 5, 623, 963
BslI CCNNNNNNNGG 4 cut(s) 397, 614, 1385, 1703
BsmAI GTCTC 1 cut(s) 1505
BsmI GAATGC 3 cut(s) 333, 367, 444
BsnI GGCC 5 cut(s) 213, 262, 1313, 1609, 1645
Bsp1286I GDGCHC 3 cut(s) 390, 494, 1083
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 5 cut(s) 343, 934, 1271, 1427, 1693
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 2 cut(s) 441, 1614
BspANI GGCC 5 cut(s) 213, 262, 1313, 1609, 1645
BspCNI CTCAG 3 cut(s) 1348, 1480, 1633
BspLI GGNNCC 5 cut(s) 261, 345, 402, 627, 1695
BspMAI CTGCAG 2 cut(s) 499, 703
BspMI ACCTGC 2 cut(s) 488, 1129
BspPI GGATC 4 cut(s) 338, 351, 1688, 1701
BspQI GCTCTTC 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 622
BsrGI TGTACA 1 cut(s) 373
BsrI ACTGG 4 cut(s) 214, 871, 1593, 1645
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 5 cut(s) 343, 934, 1271, 1427, 1693
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 6 cut(s) 185, 320, 409, 1219, 1418, 1588
Bst6I CTCTTC 4 cut(s) 729, 769, 1161, 1471
BstAUI TGTACA 1 cut(s) 373
BstC8I GCNNGC 4 cut(s) 399, 624, 1311, 1611
BstDEI CTNAG 4 cut(s) 1356, 1488, 1620, 1698
BstDSI CCRYGG 1 cut(s) 175
BstENI CCTNNNNNAGG 2 cut(s) 1383, 1701
BstF5I GGATG 2 cut(s) 694, 1043
BstKTI GATC 5 cut(s) 346, 937, 1274, 1430, 1696
BstMAI GTCTC 1 cut(s) 1505
BstMBI GATC 5 cut(s) 343, 934, 1271, 1427, 1693
BstMWI GCNNNNNNNGC 4 cut(s) 394, 902, 1319, 1526
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 3 cut(s) 495, 699, 831
BstV1I GCAGC 2 cut(s) 1306, 1628
BstV2I GAAGAC 3 cut(s) 518, 1020, 1460
BstX2I RGATCY 4 cut(s) 343, 1271, 1427, 1693
BstYI RGATCY 4 cut(s) 343, 1271, 1427, 1693
BsuI GTATCC 1 cut(s) 1065
BsuRI GGCC 5 cut(s) 213, 262, 1313, 1609, 1645
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 694, 1043
BtsI GCAGTG 3 cut(s) 492, 1314, 1543
BtsIMutI CAGTG 7 cut(s) 325, 492, 1314, 1543, 1600, 1635, 1638
BveI ACCTGC 2 cut(s) 488, 1129
Cac8I GCNNGC 4 cut(s) 399, 624, 1311, 1611
CaiI CAGNNNCTG 2 cut(s) 438, 911
Cfr10I RCCGGY 1 cut(s) 622
Cfr13I GGNCC 4 cut(s) 260, 500, 745, 1643
Csp6I GTAC 2 cut(s) 374, 1563
CviAII CATG 4 cut(s) 41, 176, 242, 1071
CviQI GTAC 2 cut(s) 374, 1563
DdeI CTNAG 4 cut(s) 1356, 1488, 1620, 1698
DpnI GATC 5 cut(s) 345, 936, 1273, 1429, 1695
DpnII GATC 5 cut(s) 343, 934, 1271, 1427, 1693
DraI TTTAAA 1 cut(s) 573
EaeI YGGCCR 2 cut(s) 211, 1311
Eam1104I CTCTTC 4 cut(s) 729, 769, 1161, 1471
EarI CTCTTC 4 cut(s) 729, 769, 1161, 1471
Ecl136II GAGCTC 2 cut(s) 388, 1081
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 1609
Eco24I GRGCYC 2 cut(s) 390, 1083
Eco32I GATATC 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 500, 745
Eco53kI GAGCTC 2 cut(s) 388, 1081
Eco57I CTGAAG 3 cut(s) 510, 530, 990
EcoICRI GAGCTC 2 cut(s) 388, 1081
EcoNI CCTNNNNNAGG 2 cut(s) 1383, 1701
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 1173
EcoT14I CCWWGG 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 390, 1083
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 4 cut(s) 44, 179, 245, 1074
FatI CATG 4 cut(s) 40, 175, 241, 1070
FbaI TGATCA 1 cut(s) 934
Fnu4HI GCNGC 4 cut(s) 442, 1320, 1614, 1617
FokI GGATG 2 cut(s) 681, 1030
FriOI GRGCYC 2 cut(s) 390, 1083
Fsp4HI GCNGC 4 cut(s) 442, 1320, 1614, 1617
FspBI CTAG 3 cut(s) 603, 897, 978
GluI GCNGC 4 cut(s) 442, 1320, 1614, 1617
GsaI CCCAGC 1 cut(s) 1344
GsuI CTGGAG 3 cut(s) 140, 795, 888
HaeIII GGCC 5 cut(s) 213, 262, 1313, 1609, 1645
HapII CCGG 3 cut(s) 5, 623, 963
Hin1II CATG 4 cut(s) 44, 179, 245, 1074
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HinfI GANTC 2 cut(s) 853, 1211
HpaII CCGG 3 cut(s) 5, 623, 963
Hpy166II GTNNAC 7 cut(s) 112, 316, 503, 1180, 1294, 1393, 1687
Hpy188I TCNGA 7 cut(s) 18, 529, 609, 970, 1009, 1192, 1623
Hpy188III TCNNGA 9 cut(s) 557, 748, 774, 938, 1076, 1252, 1280, 1425, 1726
Hpy8I GTNNAC 7 cut(s) 112, 316, 503, 1180, 1294, 1393, 1687
Hpy99I CGWCG 1 cut(s) 929
HpyAV CCTTC 2 cut(s) 736, 1723
HpyCH4III ACNGT 6 cut(s) 185, 320, 409, 1219, 1418, 1588
HpyCH4IV ACGT 2 cut(s) 1366, 1471
HpyF10VI GCNNNNNNNGC 4 cut(s) 394, 902, 1319, 1526
HpyF3I CTNAG 4 cut(s) 1356, 1488, 1620, 1698
HpySE526I ACGT 2 cut(s) 1366, 1471
Hsp92II CATG 4 cut(s) 44, 179, 245, 1074
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 5 cut(s) 343, 934, 1271, 1427, 1693
LguI GCTCTTC 1 cut(s) 769
LmnI GCTCC 9 cut(s) 7, 159, 308, 385, 393, 406, 631, 724, 869
Lsp1109I GCAGC 2 cut(s) 1306, 1628
LweI GCATC 8 cut(s) 19, 60, 117, 815, 1018, 1052, 1327, 1430
MaeI CTAG 3 cut(s) 603, 897, 978
MaeII ACGT 2 cut(s) 1366, 1471
MaeIII GTNAC 6 cut(s) 673, 973, 1367, 1483, 1588, 1597
MalI GATC 5 cut(s) 345, 936, 1273, 1429, 1695
MboI GATC 5 cut(s) 343, 934, 1271, 1427, 1693
MflI RGATCY 4 cut(s) 343, 1271, 1427, 1693
MhlI GDGCHC 3 cut(s) 390, 494, 1083
MlsI TGGCCA 2 cut(s) 213, 1313
MluNI TGGCCA 2 cut(s) 213, 1313
MmeI TCCRAC 1 cut(s) 428
Mox20I TGGCCA 2 cut(s) 213, 1313
MroNI GCCGGC 1 cut(s) 622
MscI TGGCCA 2 cut(s) 213, 1313
MseI TTAA 5 cut(s) 543, 572, 945, 951, 1113
Msp20I TGGCCA 2 cut(s) 213, 1313
MspI CCGG 3 cut(s) 5, 623, 963
MspR9I CCNGG 1 cut(s) 158
Mva1269I GAATGC 3 cut(s) 333, 367, 444
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 394, 902, 1319, 1526
NaeI GCCGGC 1 cut(s) 624
NcoI CCATGG 1 cut(s) 175
NdeII GATC 5 cut(s) 343, 934, 1271, 1427, 1693
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 4 cut(s) 44, 179, 245, 1074
NlaIV GGNNCC 5 cut(s) 261, 345, 402, 627, 1695
NmuCI GTSAC 1 cut(s) 973
PceI AGGCCT 1 cut(s) 1609
PciSI GCTCTTC 1 cut(s) 769
PctI GAATGC 3 cut(s) 333, 367, 444
PdiI GCCGGC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 853, 1211
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 4 cut(s) 443, 1321, 1615, 1618
PshBI ATTAAT 1 cut(s) 543
Psp124BI GAGCTC 2 cut(s) 390, 1083
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 1340
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 5 cut(s) 261, 345, 402, 627, 1695
PspPI GGNCC 4 cut(s) 260, 500, 745, 1643
PstI CTGCAG 2 cut(s) 499, 703
PstNI CAGNNNCTG 2 cut(s) 438, 911
PsuI RGATCY 4 cut(s) 343, 1271, 1427, 1693
RsaI GTAC 2 cut(s) 375, 1564
RsaNI GTAC 2 cut(s) 374, 1563
SacI GAGCTC 2 cut(s) 390, 1083
SapI GCTCTTC 1 cut(s) 769
SaqAI TTAA 5 cut(s) 543, 572, 945, 951, 1113
SatI GCNGC 4 cut(s) 442, 1320, 1614, 1617
Sau3AI GATC 5 cut(s) 343, 934, 1271, 1427, 1693
Sau96I GGNCC 4 cut(s) 260, 500, 745, 1643
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 3 cut(s) 390, 494, 1083
SfaNI GCATC 8 cut(s) 19, 60, 117, 815, 1018, 1052, 1327, 1430
SfcI CTRYAG 3 cut(s) 495, 699, 831
SinI GGWCC 2 cut(s) 500, 745
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 1609
SsiI CCGC 2 cut(s) 441, 1614
SspI AATATT 1 cut(s) 1711
SspMI CTAG 3 cut(s) 603, 897, 978
SstI GAGCTC 2 cut(s) 390, 1083
StuI AGGCCT 1 cut(s) 1609
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 6 cut(s) 185, 320, 409, 1219, 1418, 1588
TaiI ACGT 2 cut(s) 1369, 1474
TatI WGTACW 2 cut(s) 373, 1562
TauI GCSGC 2 cut(s) 444, 1616
TfiI GAWTC 2 cut(s) 853, 1211
Tru1I TTAA 5 cut(s) 543, 572, 945, 951, 1113
Tru9I TTAA 5 cut(s) 543, 572, 945, 951, 1113
TscAI CASTG 7 cut(s) 325, 499, 1321, 1543, 1600, 1635, 1645
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 2 cut(s) 1319, 1616
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 6 cut(s) 57, 771, 1026, 1482, 1562, 1707
TspGWI ACGGA 4 cut(s) 295, 1000, 1197, 1474
TspRI CASTG 7 cut(s) 325, 499, 1321, 1543, 1600, 1635, 1645
VpaK11BI GGWCC 2 cut(s) 500, 745
VspI ATTAAT 1 cut(s) 543
XagI CCTNNNNNAGG 2 cut(s) 1383, 1701
XapI RAATTY 6 cut(s) 287, 368, 790, 826, 888, 1446
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XspI CTAG 3 cut(s) 603, 897, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.