Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Forward (+)

12325011 .. 12329694

Gene Structure 4684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATGCGGATGCTGAGGTCACACAGCAGCAGCTTCAGAGCCTCAATCTTCGAGTCCAATCACTCAAAGGTTGGGCTCCGCCACATCGTCACCGCCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCTGAAGTTCTGGAGCTCCGCCCAATCGTCGACGTTCCTGATCTCAAGCCCAATGAGGTCCTCGTTCGCACTCGCGCCGTCTCGATCAATCCTCTTGATACCAGAATGCGGTCTGGCTATGGTCGTTCAATATTTGGACCTCTTCTACCTCTTATTCTGGGACGTGATATCAGTGGTGAAGTTGCAGCTGTGGGGGCTTCAGTTAAGGGACTTACTGTAGGACAAGAAGTTTTTGGTGCATTGCATCCGACTGCTGTCAGGGGTACTTATACCGATTATGCAATTCTCTCAGAAGATGAACTTGCCCCAAAACCAGCATCAATCACACATGTGGAAGCAAGTGCCATTCCTTTTGCCGCGTTGACTGCTTGGCGTGCTCTGCAAGGTACTGCAAGGATATCTGAGGGGCAAAGACTGTTAGTAGTGGGCGGTGGAGGAGCTGTAGGCTTTGCTGCAATCCAGCTTTCAGTAGCTGCAAGGTGCCATGTTACTACGACATGTGGACGCCAAAGTATAGATCGAGTATTGGCAGCTGGTGCTGAGCAGGCTATTGACTATACGACTGAGGACATGGCATTGACAATAAAGGGCAAGTTTGATGCTGTTTTGGATACCATTGGTGGGCCAGAGACGGAAAGAATAAGCGTAAGTCTTTTAAAGAAAGGCGGACACTATATGACACTTCAGGGCGAGGCAGCATCTTTGACTGATAGATATGGAATAGCAATTGGGCTTCCAGTAGCAACTGCGGTCTTACTGAAGAAACAGATCCAGTACCGGTATTCTCATGGAATAGAGTACTGGTGGACTTTCATGAGAGCTGACTCGGAAGGGTTACATGAGATACGAAAGCTATCTGAAGCTGGAAAGCTAAACATACCTGTGGAGAAAACATTTCCTATCTCTCAAGTGAGAGAGGCTCACGAGGCAAAGGAGAAGAAGCAGATTCATGGTAAAGTAGTACTCGAACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

369

Amino Acids

39.81

Weight (kDa)

9.02

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	59 - 148	3e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	190 - 273	7.8e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	222 - 274	6.9e-08	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	3 cut(s)	118, 204, 488
AclWI	GGATC	1 cut(s)	892
AcuI	CTGAAG	6 cut(s)	19, 153, 312, 797, 908, 1008
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	5 cut(s)	394, 517, 905, 929, 1092
AfiI	CCNNNNNNNGG	3 cut(s)	122, 237, 750
AflIII	ACRYGT	2 cut(s)	457, 626
AgeI	ACCGGT	1 cut(s)	906
AgsI	TTSAA	1 cut(s)	258
AjiI	CACGTC	1 cut(s)	293
AleI	CACNNNNGTG	1 cut(s)	458
Alw21I	GWGCWC	2 cut(s)	147, 508
Alw26I	GTCTC	2 cut(s)	214, 752
AlwI	GGATC	1 cut(s)	892
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	128, 752
ApeKI	GCWGC	8 cut(s)	27, 30, 112, 314, 581, 602, 659, 824
AsiGI	ACCGGT	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	120, 206
AspS9I	GGNCC	4 cut(s)	128, 187, 266, 752
AsuHPI	GGTGA	2 cut(s)	82, 317
AvaII	GGWCC	2 cut(s)	187, 266
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	2 cut(s)	78, 147
BauI	CACGAG	1 cut(s)	1052
Bbv12I	GWGCWC	2 cut(s)	147, 508
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	8 cut(s)	39, 42, 99, 326, 568, 589, 671, 836
BceAI	ACGGC	2 cut(s)	89, 191
BciVI	GTATCC	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	214, 752
BfmI	CTRYAG	3 cut(s)	97, 345, 570
BfuI	GTATCC	1 cut(s)	733
BlpI	GCTNAGC	1 cut(s)	669
BmcAI	AGTACT	2 cut(s)	929, 1092
Bme18I	GGWCC	2 cut(s)	187, 266
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	4 cut(s)	128, 187, 266, 752
BmiI	GGNNCC	2 cut(s)	77, 611
BmsI	GCATC	4 cut(s)	382, 455, 718, 836
BoxI	GACNNNNGTC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	1033, 1065
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	158, 1020
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	906
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 237, 750
Bse118I	RCCGGY	1 cut(s)	906
Bse1I	ACTGG	3 cut(s)	866, 901, 935
Bse3DI	GCAATG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	15, 373
BseLI	CCNNNNNNNGG	3 cut(s)	122, 237, 750
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	5 cut(s)	5, 432, 522, 660, 684
BseNI	ACTGG	3 cut(s)	866, 901, 935
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	8 cut(s)	39, 42, 99, 326, 568, 589, 671, 836
Bsh1236I	CGCG	3 cut(s)	118, 204, 488
BshFI	GGCC	2 cut(s)	130, 754
BshNI	GGYRCC	1 cut(s)	609
BshTI	ACCGGT	1 cut(s)	906
BsiHKAI	GWGCWC	2 cut(s)	147, 508
BsiSI	CCGG	1 cut(s)	907
BslFI	GGGAC	2 cut(s)	303, 351
BslI	CCNNNNNNNGG	3 cut(s)	122, 237, 750
BsmAI	GTCTC	2 cut(s)	214, 752
BsmBI	CGTCTC	2 cut(s)	214, 752
BsmFI	GGGAC	2 cut(s)	303, 351
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	130, 754
Bsp1286I	GDGCHC	3 cut(s)	78, 147, 508
Bsp143I	GATC	4 cut(s)	169, 213, 646, 897
Bsp1720I	GCTNAGC	1 cut(s)	669
BspANI	GGCC	2 cut(s)	130, 754
BspCNI	CTCAG	5 cut(s)	6, 431, 523, 661, 685
BspFNI	CGCG	3 cut(s)	118, 204, 488
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	77, 611
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	1 cut(s)	892
BspT107I	GGYRCC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	906
BsrI	ACTGG	3 cut(s)	866, 901, 935
BssAI	RCCGGY	1 cut(s)	906
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	4 cut(s)	169, 213, 646, 897
BssNI	GRCGYC	1 cut(s)	634
BssSI	CACGAG	1 cut(s)	1052
Bst2BI	CACGAG	1 cut(s)	1052
Bst4CI	ACNGT	2 cut(s)	346, 546
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	634
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	4 cut(s)	97, 128, 504, 675
BstDEI	CTNAG	5 cut(s)	14, 418, 531, 669, 693
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	15, 373
BstFNI	CGCG	3 cut(s)	118, 204, 488
BstHHI	GCGC	2 cut(s)	120, 206
BstKTI	GATC	4 cut(s)	172, 216, 649, 900
BstMAI	GTCTC	2 cut(s)	214, 752
BstMBI	GATC	4 cut(s)	169, 213, 646, 897
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 323, 494, 503, 508, 665, 674, 1055
BstNSI	RCATGY	2 cut(s)	461, 630
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSFI	CTRYAG	3 cut(s)	97, 345, 570
BstUI	CGCG	3 cut(s)	118, 204, 488
BstV1I	GCAGC	8 cut(s)	39, 42, 99, 326, 568, 589, 671, 836
BstX2I	RGATCY	1 cut(s)	897
BstYI	RGATCY	1 cut(s)	897
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	130, 754
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	15, 373
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	4 cut(s)	97, 128, 504, 675
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	2 cut(s)	120, 206
Cfr10I	RCCGGY	1 cut(s)	906
Cfr13I	GGNCC	4 cut(s)	128, 187, 266, 752
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	5 cut(s)	393, 516, 904, 928, 1091
CspAI	ACCGGT	1 cut(s)	906
CviAII	CATG	8 cut(s)	458, 614, 627, 700, 917, 943, 968, 1079
CviQI	GTAC	5 cut(s)	393, 516, 904, 928, 1091
DdeI	CTNAG	5 cut(s)	14, 418, 531, 669, 693
DpnI	GATC	4 cut(s)	171, 215, 648, 899
DpnII	GATC	4 cut(s)	169, 213, 646, 897
DraI	TTTAAA	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	3 cut(s)	68, 137, 810
Ecl136II	GAGCTC	1 cut(s)	145
Eco24I	GRGCYC	2 cut(s)	78, 147
Eco32I	GATATC	2 cut(s)	298, 528
Eco47I	GGWCC	2 cut(s)	187, 266
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	6 cut(s)	19, 153, 312, 797, 908, 1008
EcoICRI	GAGCTC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRV	GATATC	2 cut(s)	298, 528
EcoT38I	GRGCYC	2 cut(s)	78, 147
Esp3I	CGTCTC	2 cut(s)	214, 752
FaeI	CATG	8 cut(s)	461, 617, 630, 703, 920, 946, 971, 1082
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	2 cut(s)	303, 351
FatI	CATG	8 cut(s)	457, 613, 626, 699, 916, 942, 967, 1078
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	2 cut(s)	22, 360
FriOI	GRGCYC	2 cut(s)	78, 147
GlaI	GCGC	2 cut(s)	119, 205
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	130, 754
HapII	CCGG	1 cut(s)	907
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	2 cut(s)	120, 206
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	8 cut(s)	461, 617, 630, 703, 920, 946, 971, 1082
Hin6I	GCGC	2 cut(s)	118, 204
HinP1I	GCGC	2 cut(s)	118, 204
HincII	GTYRAC	2 cut(s)	160, 492
HindII	GTYRAC	2 cut(s)	160, 492
HinfI	GANTC	3 cut(s)	53, 953, 1075
HpaII	CCGG	1 cut(s)	907
HphI	GGTGA	2 cut(s)	82, 317
Hpy166II	GTNNAC	4 cut(s)	160, 492, 632, 936
Hpy188I	TCNGA	6 cut(s)	38, 378, 421, 532, 958, 988
Hpy188III	TCNNGA	6 cut(s)	140, 167, 211, 224, 943, 1052
Hpy8I	GTNNAC	4 cut(s)	160, 492, 632, 936
Hpy99I	CGWCG	2 cut(s)	161, 164
HpyAV	CCTTC	1 cut(s)	953
HpyCH4III	ACNGT	2 cut(s)	346, 546
HpyCH4IV	ACGT	2 cut(s)	162, 292
HpyCH4V	TGCA	9 cut(s)	99, 314, 368, 373, 410, 511, 521, 584, 605
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 323, 494, 503, 508, 665, 674, 1055
HpyF3I	CTNAG	5 cut(s)	14, 418, 531, 669, 693
HpySE526I	ACGT	2 cut(s)	162, 292
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	8 cut(s)	461, 617, 630, 703, 920, 946, 971, 1082
HspAI	GCGC	2 cut(s)	118, 204
Kzo9I	GATC	4 cut(s)	169, 213, 646, 897
LmnI	GCTCC	4 cut(s)	81, 142, 150, 566
Lsp1109I	GCAGC	8 cut(s)	39, 42, 99, 326, 568, 589, 671, 836
LweI	GCATC	4 cut(s)	382, 455, 718, 836
MaeII	ACGT	2 cut(s)	162, 292
MaeIII	GTNAC	4 cut(s)	18, 88, 616, 963
MalI	GATC	4 cut(s)	171, 215, 648, 899
MboI	GATC	4 cut(s)	169, 213, 646, 897
MboII	GAAGA	5 cut(s)	40, 263, 434, 901, 1078
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	1 cut(s)	897
MhlI	GDGCHC	3 cut(s)	78, 147, 508
MluCI	AATT	2 cut(s)	411, 855
MlyI	GAGTC	2 cut(s)	62, 947
MmeI	TCCRAC	1 cut(s)	401
MseI	TTAA	2 cut(s)	333, 785
MslI	CAYNNNNRTG	2 cut(s)	458, 1010
MspA1I	CMGCKG	2 cut(s)	317, 662
MspI	CCGG	1 cut(s)	907
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	240
MvnI	CGCG	3 cut(s)	118, 204, 488
MwoI	GCNNNNNNNGC	8 cut(s)	101, 323, 494, 503, 508, 665, 674, 1055
NdeII	GATC	4 cut(s)	169, 213, 646, 897
NlaIII	CATG	8 cut(s)	461, 617, 630, 703, 920, 946, 971, 1082
NlaIV	GGNNCC	2 cut(s)	77, 611
NmuCI	GTSAC	2 cut(s)	18, 88
NspI	RCATGY	2 cut(s)	461, 630
OliI	CACNNNNGTG	1 cut(s)	458
PagI	TCATGA	1 cut(s)	942
PciI	ACATGT	2 cut(s)	457, 626
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	1075
PinAI	ACCGGT	1 cut(s)	906
PleI	GAGTC	2 cut(s)	61, 947
PpsI	GAGTC	2 cut(s)	61, 947
PpuMI	RGGWCCY	1 cut(s)	187
PscI	ACATGT	2 cut(s)	457, 626
PshAI	GACNNNNGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	77, 611
PspPI	GGNCC	4 cut(s)	128, 187, 266, 752
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	897
PvuII	CAGCTG	2 cut(s)	317, 662
RsaI	GTAC	5 cut(s)	394, 517, 905, 929, 1092
RsaNI	GTAC	5 cut(s)	393, 516, 904, 928, 1091
RseI	CAYNNNNRTG	2 cut(s)	458, 1010
SacI	GAGCTC	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	333, 785
Sau3AI	GATC	4 cut(s)	169, 213, 646, 897
Sau96I	GGNCC	4 cut(s)	128, 187, 266, 752
ScaI	AGTACT	2 cut(s)	929, 1092
SchI	GAGTC	2 cut(s)	62, 947
SduI	GDGCHC	3 cut(s)	78, 147, 508
SfaNI	GCATC	4 cut(s)	382, 455, 718, 836
SfcI	CTRYAG	3 cut(s)	97, 345, 570
SgrDI	CGTCGACG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	187, 266
SmiMI	CAYNNNNRTG	2 cut(s)	458, 1010
SmlI	CTYRAG	2 cut(s)	173, 1035
SmoI	CTYRAG	2 cut(s)	173, 1035
Sse9I	AATT	2 cut(s)	411, 855
SspI	AATATT	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	346, 546
TaiI	ACGT	2 cut(s)	165, 295
TaqI	TCGA	5 cut(s)	51, 159, 212, 649, 1095
TasI	AATT	2 cut(s)	411, 855
TatI	WGTACW	2 cut(s)	927, 1090
TauI	GCSGC	2 cut(s)	118, 488
TfiI	GAWTC	1 cut(s)	1075
Tru1I	TTAA	2 cut(s)	333, 785
Tru9I	TTAA	2 cut(s)	333, 785
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	18, 88
TseI	GCWGC	8 cut(s)	27, 30, 112, 314, 581, 602, 659, 824
Tsp45I	GTSAC	2 cut(s)	18, 88
TspDTI	ATGAA	3 cut(s)	441, 931, 1067
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	187, 266
XceI	RCATGY	2 cut(s)	461, 630
XmiI	GTMKAC	1 cut(s)	159
ZrmI	AGTACT	2 cut(s)	929, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.