Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Reverse (-)

36941743 .. 36945935

Gene Structure 4193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1257100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCGAATTCTTAAGTCGCGCAGCTTCAGAGCCTCAGTCTCCGGCTCCAATCACCACCTCAAGGTAGGGTTCCGGCGCTTCGTCACCAGCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCGGAGGTTCTGGAGCTCCGGCCCAATGTCGAAGTCCCTGATCTCAAACCCCATGAGGTCCTCGTCCGCGCTCGTGCCGCCTCCGTCAATCCCCTCGATACCAGAATACGATCTGGCTATGGTCGTTCCTTATATGGACCTCTTTTACCTATTATTTTGGGTCGTGATATTAGCGGTGAAGTTGCAGCTACGGGAGATTCAGTTCGAGGATTGAGTGTGGGACAAGAAGTTTTTGGTGCATTGCATCCTACTGCTGTAAGGGGTACTTATTCTGACTATGCAATTCTATCAGAAGAGGAACTTGCACCAAAACCATCATCAGTTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCTCTGACTGCTTGGCGTGCTCTCATAAGTACTGCTAGGATAGCTGAGGGCCAAAGGCTGTTAGTTGTGGGTGGTGGAGGAGCTGTAGGTTTGGCTGCAATTCAGATTTCAGTAGCCAGAGGCTGCCATGTTACAACTACCTGTGGAAAGAAAAGTATAGATCGAGTATTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACTGCTGAGAACATTGAATTCACAATAAGGGGGAAGTTTGATGCTGTATTGGATACCATTGGCGGGCCAGAGACCGAAAGAATATGCATAAACTTTTTAAAGAGAGGTGGGCACTACATGACACTTCAGGGTGACGCAGCATCTTTGAGTGATAGGTATGGAATAGCTATTGGGCTTCCTGTTGCTACAGCTGCTTTACTGAAGAAACAGATTAAGTACCGGTATTCTCACGGAATAGAGTACTGGTGGACTTATATGAGAGCCGACTCAGAAGGGTTAGATGAGATCCGAAGGCTGTCTGAAACCGGAAAGTTGAATATACCAGTGGAGAAAACGTTTCCCATCACTCAAGTGATAGAGGCTCACGAGGCAAAGGAGAAGAAGCAGATCCACGGGAAAATAGTGCTCGAATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

367

Amino Acids

39.74

Weight (kDa)

9.17

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	57 - 146	7.1e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	188 - 271	5.3e-11	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	220 - 363	6e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	19, 112, 192
AciI	CCGC	6 cut(s)	110, 120, 190, 201, 297, 744
AclI	AACGTT	1 cut(s)	1016
AclWI	GGATC	2 cut(s)	961, 1063
AcsI	RAATTY	3 cut(s)	6, 698, 1091
AcuI	CTGAAG	3 cut(s)	10, 791, 902
AfaI	GTAC	4 cut(s)	388, 511, 899, 923
AfiI	CCNNNNNNNGG	3 cut(s)	61, 116, 744
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	451
AgeI	ACCGGT	1 cut(s)	900
AgsI	TTSAA	2 cut(s)	698, 997
AleI	CACNNNNGTG	1 cut(s)	1031
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	9 cut(s)	24, 90, 139, 311, 524, 563, 656, 848, 872
AluI	AGCT	9 cut(s)	24, 90, 139, 311, 524, 563, 656, 848, 872
Alw21I	GWGCWC	3 cut(s)	141, 502, 1089
Alw26I	GTCTC	2 cut(s)	43, 746
AlwI	GGATC	2 cut(s)	961, 1063
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	4 cut(s)	122, 143, 529, 746
ApoI	RAATTY	3 cut(s)	6, 698, 1091
AsiGI	ACCGGT	1 cut(s)	900
AspLEI	GCGC	4 cut(s)	21, 78, 114, 194
AspS9I	GGNCC	6 cut(s)	122, 144, 181, 260, 529, 746
AsuHPI	GGTGA	4 cut(s)	44, 76, 311, 824
AvaII	GGWCC	2 cut(s)	181, 260
BaeGI	GKGCMC	1 cut(s)	795
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	2 cut(s)	195, 1046
Bbv12I	GWGCWC	3 cut(s)	141, 502, 1089
BbvCI	CCTCAGC	1 cut(s)	525
BccI	CCATC	2 cut(s)	445, 1031
BceAI	ACGGC	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	43, 746
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	3 cut(s)	91, 564, 867
BfoI	RGCGCY	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	727
BlpI	GCTNAGC	1 cut(s)	663
BmcAI	AGTACT	2 cut(s)	511, 923
Bme18I	GGWCC	2 cut(s)	181, 260
BmgT120I	GGNCC	6 cut(s)	122, 144, 181, 260, 529, 746
BmiI	GGNNCC	2 cut(s)	46, 71
BmsI	GCATC	3 cut(s)	376, 712, 830
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	44, 1014
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	2 cut(s)	99, 1072
BsaWI	WCCGGW	2 cut(s)	900, 986
BsaXI	ACNNNNNCTCC	6 cut(s)	309, 339, 549, 579, 1001, 1031
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 116, 744
Bse118I	RCCGGY	1 cut(s)	900
Bse1I	ACTGG	2 cut(s)	929, 1004
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	99, 1072
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	3 cut(s)	61, 116, 744
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	5 cut(s)	48, 516, 654, 678, 963
BseNI	ACTGG	2 cut(s)	929, 1004
BseRI	GAGGAG	1 cut(s)	573
BseSI	GKGCMC	1 cut(s)	795
Bsh1236I	CGCG	3 cut(s)	19, 112, 192
BshFI	GGCC	4 cut(s)	124, 145, 531, 748
BshTI	ACCGGT	1 cut(s)	900
BsiHKAI	GWGCWC	3 cut(s)	141, 502, 1089
BsiSI	CCGG	6 cut(s)	42, 73, 125, 142, 901, 987
BslFI	GGGAC	2 cut(s)	143, 357
BslI	CCNNNNNNNGG	3 cut(s)	61, 116, 744
BsmAI	GTCTC	2 cut(s)	43, 746
BsmFI	GGGAC	2 cut(s)	143, 357
BsnI	GGCC	4 cut(s)	124, 145, 531, 748
Bso31I	GGTCTC	1 cut(s)	746
Bsp1286I	GDGCHC	4 cut(s)	141, 502, 795, 1089
Bsp143I	GATC	5 cut(s)	163, 233, 640, 966, 1068
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	6 cut(s)	110, 120, 190, 201, 297, 744
BspANI	GGCC	4 cut(s)	124, 145, 531, 748
BspCNI	CTCAG	5 cut(s)	47, 517, 655, 679, 962
BspFNI	CGCG	3 cut(s)	19, 112, 192
BspLI	GGNNCC	2 cut(s)	46, 71
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	2 cut(s)	961, 1063
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	929, 1004
BssAI	RCCGGY	1 cut(s)	900
BssECI	CCNNGG	2 cut(s)	99, 1072
BssMI	GATC	5 cut(s)	163, 233, 640, 966, 1068
BssSI	CACGAG	2 cut(s)	195, 1046
Bst2BI	CACGAG	2 cut(s)	195, 1046
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	4 cut(s)	122, 498, 669, 746
BstDEI	CTNAG	5 cut(s)	34, 525, 663, 687, 949
BstDSI	CCRYGG	2 cut(s)	99, 1072
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	3 cut(s)	19, 112, 192
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	4 cut(s)	21, 78, 114, 194
BstKTI	GATC	5 cut(s)	166, 236, 643, 969, 1071
BstMAI	GTCTC	2 cut(s)	43, 746
BstMBI	GATC	5 cut(s)	163, 233, 640, 966, 1068
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 659, 668, 872, 1049
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	3 cut(s)	91, 564, 867
BstSLI	GKGCMC	1 cut(s)	795
BstUI	CGCG	3 cut(s)	19, 112, 192
BstX2I	RGATCY	2 cut(s)	966, 1068
BstYI	RGATCY	2 cut(s)	966, 1068
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	4 cut(s)	124, 145, 531, 748
BtgI	CCRYGG	2 cut(s)	99, 1072
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	1011
Cac8I	GCNNGC	4 cut(s)	122, 498, 669, 746
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	4 cut(s)	21, 78, 114, 194
Cfr10I	RCCGGY	1 cut(s)	900
Cfr13I	GGNCC	6 cut(s)	122, 144, 181, 260, 529, 746
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	4 cut(s)	387, 510, 898, 922
CspAI	ACCGGT	1 cut(s)	900
CviAII	CATG	4 cut(s)	176, 452, 608, 799
CviQI	GTAC	4 cut(s)	387, 510, 898, 922
DdeI	CTNAG	5 cut(s)	34, 525, 663, 687, 949
DpnI	GATC	5 cut(s)	165, 235, 642, 968, 1070
DpnII	GATC	5 cut(s)	163, 233, 640, 966, 1068
DraI	TTTAAA	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	2 cut(s)	181, 260
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	10, 791, 902
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	2 cut(s)	6, 698
EcoT22I	ATGCAT	1 cut(s)	770
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	4 cut(s)	179, 455, 611, 802
FalI	AAGNNNNNCTT	4 cut(s)	373, 405, 408, 440
FaqI	GGGAC	2 cut(s)	143, 357
FatI	CATG	4 cut(s)	175, 451, 607, 798
FauI	CCCGC	2 cut(s)	113, 737
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	4 cut(s)	20, 77, 113, 193
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	4 cut(s)	124, 145, 531, 748
HapII	CCGG	6 cut(s)	42, 73, 125, 142, 901, 987
HgaI	GACGC	1 cut(s)	824
HhaI	GCGC	4 cut(s)	21, 78, 114, 194
Hin1II	CATG	4 cut(s)	179, 455, 611, 802
Hin6I	GCGC	4 cut(s)	19, 76, 112, 192
HinP1I	GCGC	4 cut(s)	19, 76, 112, 192
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	2 cut(s)	320, 947
HpaII	CCGG	6 cut(s)	42, 73, 125, 142, 901, 987
HphI	GGTGA	4 cut(s)	44, 76, 311, 824
Hpy166II	GTNNAC	2 cut(s)	676, 930
Hpy188I	TCNGA	8 cut(s)	29, 397, 415, 486, 585, 952, 971, 982
Hpy188III	TCNNGA	3 cut(s)	134, 287, 1046
Hpy8I	GTNNAC	2 cut(s)	676, 930
HpyAV	CCTTC	2 cut(s)	947, 966
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	8 cut(s)	93, 308, 362, 367, 404, 428, 578, 768
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 659, 668, 872, 1049
HpyF3I	CTNAG	5 cut(s)	34, 525, 663, 687, 949
HpySE526I	ACGT	1 cut(s)	1016
Hsp92II	CATG	4 cut(s)	179, 455, 611, 802
HspAI	GCGC	4 cut(s)	19, 76, 112, 192
Kzo9I	GATC	5 cut(s)	163, 233, 640, 966, 1068
LmnI	GCTCC	4 cut(s)	50, 136, 144, 560
LweI	GCATC	3 cut(s)	376, 712, 830
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	4 cut(s)	82, 445, 610, 812
MalI	GATC	5 cut(s)	165, 235, 642, 968, 1070
MboI	GATC	5 cut(s)	163, 233, 640, 966, 1068
MboII	GAAGA	3 cut(s)	428, 895, 1072
MflI	RGATCY	2 cut(s)	966, 1068
MhlI	GDGCHC	4 cut(s)	141, 502, 795, 1089
MluCI	AATT	5 cut(s)	6, 405, 579, 698, 1091
MlyI	GAGTC	1 cut(s)	941
Mph1103I	ATGCAT	1 cut(s)	770
MseI	TTAA	3 cut(s)	12, 779, 894
MslI	CAYNNNNRTG	1 cut(s)	1031
MspA1I	CMGCKG	3 cut(s)	90, 656, 872
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	6 cut(s)	42, 73, 125, 142, 901, 987
MvnI	CGCG	3 cut(s)	19, 112, 192
MwoI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 659, 668, 872, 1049
NdeII	GATC	5 cut(s)	163, 233, 640, 966, 1068
NlaIII	CATG	4 cut(s)	179, 455, 611, 802
NlaIV	GGNNCC	2 cut(s)	46, 71
NmuCI	GTSAC	2 cut(s)	82, 812
NsiI	ATGCAT	1 cut(s)	770
NspI	RCATGY	1 cut(s)	455
OliI	CACNNNNGTG	1 cut(s)	1031
PciI	ACATGT	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	320
PinAI	ACCGGT	1 cut(s)	900
PleI	GAGTC	1 cut(s)	941
PpsI	GAGTC	1 cut(s)	941
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	1016
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	46, 71
PspPI	GGNCC	6 cut(s)	122, 144, 181, 260, 529, 746
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	966, 1068
PvuII	CAGCTG	3 cut(s)	90, 656, 872
RsaI	GTAC	4 cut(s)	388, 511, 899, 923
RsaNI	GTAC	4 cut(s)	387, 510, 898, 922
RseI	CAYNNNNRTG	1 cut(s)	1031
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	12, 779, 894
Sau3AI	GATC	5 cut(s)	163, 233, 640, 966, 1068
Sau96I	GGNCC	6 cut(s)	122, 144, 181, 260, 529, 746
ScaI	AGTACT	2 cut(s)	511, 923
SchI	GAGTC	1 cut(s)	941
SduI	GDGCHC	4 cut(s)	141, 502, 795, 1089
SfaNI	GCATC	3 cut(s)	376, 712, 830
SfcI	CTRYAG	3 cut(s)	91, 564, 867
SinI	GGWCC	2 cut(s)	181, 260
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	3 cut(s)	11, 59, 1029
SmoI	CTYRAG	3 cut(s)	11, 59, 1029
Sse9I	AATT	5 cut(s)	6, 405, 579, 698, 1091
SsiI	CCGC	6 cut(s)	110, 120, 190, 201, 297, 744
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	141
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	5 cut(s)	153, 219, 328, 643, 1089
TaqII	GACCGA	1 cut(s)	770
TasI	AATT	5 cut(s)	6, 405, 579, 698, 1091
TatI	WGTACW	2 cut(s)	509, 921
TauI	GCSGC	2 cut(s)	112, 203
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	12, 779, 894
Tru9I	TTAA	3 cut(s)	12, 779, 894
TscAI	CASTG	1 cut(s)	1011
TseFI	GTSAC	2 cut(s)	82, 812
Tsp45I	GTSAC	2 cut(s)	82, 812
TspGWI	ACGGA	2 cut(s)	196, 927
TspRI	CASTG	1 cut(s)	1011
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	181, 260
XapI	RAATTY	3 cut(s)	6, 698, 1091
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	2 cut(s)	511, 923
Zsp2I	ATGCAT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.