pycom03g18240

Reticulon-4-interacting protein 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
19249592 .. 19253221
3630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18240.4

Sequence Viewer

Length: 1101 bp
ATGCGAATTCTTCGGCCCCCTAGCTTCAGCGCCTCGGTCTCCAACTCCAATCGCCACGTCAAGGTAAGGTTCCGGCGCTTCGTCACCAGCTGCAGGGCCGTGGTGCTGCCGCGCTTCGGCGGGCCGGAGGTTCTTGAGCTCCGGCCCATTGTCCAAGTCCCTGATCTCAAGCCCCATGAGGTCCTTGTTCGCGCTCGCGCCGTCTCCATCAATCCCCTCGATACCAGAATGCGATCTGGCTATGGTCGTTCCATATTTGGACCTCATCTACCTCTTATTTTGGGTCGTGATATTAGCGGTGATGTTGCAGCTGTGGGAGATTCAGTTCGAGGTTTGAGTGTGGGACAAGAAGTTTTTGGTGCATTGCATCCTACTGCTGTAAGGGGTACTTATGCTGACTATGCAATTCTTTCAGAAGAGGAACTTGCACCAAAACCAGCATCAGTTACACACGTGGAAGCTAGTGCCATTCCATTTGCTTCCCTGACTGCTTGGCGAGCTCTCATAAGTACCGCTAGGATAGCTGAGGGCCAACGGCTGTTAGTTGTGGGTGGTGGAGGAGCTGTAGGTTTGGCCGCAATTCAGATTTCAGTAGCCAGAGGCTGCCATGTTACAGCTACATGTGGAAAGCAAAGTATAGATCGAGTATTGGCAGCCGGTGCTGAGCAGGCTGTTGACTATACTACTGAGAACATCGAATTTACAATAAAGGGGAAGTTTGATGCTGTATTGGATACCATTGGTGGTCCAGAGACCGAAAGAATATGCATAAACCTTTTAAAGAGAGGTGGGCACTACATGACACTTCAGGGTGACGCCGCATCTTTGGCTGATAGTTATGGGATAGCTATTGGGCTTCCTGTTGCTACAGCTGCTTTACTGAAGAAACAGATTCAGTACCGGTATTCTCACGGAATAGAGTACTGGTGGACTTATATGAGAGCCGACACAGAAGGGTTGGATGAGATTCGGAGGCTGTCTGAGGCCGGAAAGTTGAATATACCAGTGGAGAAAACATTTCCCATCACTCAAGTGATAGAGGCCCACAAGGCAAGGGAGAAGAAGCAGATCCATGGGAAAATAGTGCTCGAACTCGACTGA

Protein Analysis

367

Amino Acids

39.68

Weight (kDa)

9.21

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012404)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 112, 192, 198
AciI CCGC 6 cut(s) 110, 120, 297, 513, 576, 819
AclWI GGATC 1 cut(s) 1063
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 2 cut(s) 6, 698
AcuI CTGAAG 3 cut(s) 10, 791, 902
AcvI CACGTG 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 816
AfaI GTAC 4 cut(s) 388, 511, 899, 923
AfiI CCNNNNNNNGG 3 cut(s) 61, 93, 116
AflIII ACRYGT 2 cut(s) 451, 620
AgeI ACCGGT 1 cut(s) 900
AgsI TTSAA 1 cut(s) 997
AjiI CACGTC 1 cut(s) 58
AleI CACNNNNGTG 1 cut(s) 1031
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
Alw21I GWGCWC 3 cut(s) 141, 502, 1089
Alw26I GTCTC 3 cut(s) 43, 208, 746
AlwI GGATC 1 cut(s) 1063
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 8 cut(s) 14, 96, 122, 143, 529, 573, 984, 1041
ApeKI GCWGC 6 cut(s) 90, 106, 308, 603, 653, 872
ApoI RAATTY 2 cut(s) 6, 698
AsiGI ACCGGT 1 cut(s) 900
AspLEI GCGC 5 cut(s) 32, 78, 114, 194, 200
AspS9I GGNCC 9 cut(s) 15, 96, 122, 144, 181, 260, 529, 746, 1042
AsuHPI GGTGA 3 cut(s) 76, 311, 824
AvaII GGWCC 3 cut(s) 181, 260, 746
BaeGI GKGCMC 1 cut(s) 795
BanII GRGCYC 2 cut(s) 141, 502
BbrPI CACGTG 1 cut(s) 454
Bbv12I GWGCWC 3 cut(s) 141, 502, 1089
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 6 cut(s) 77, 93, 320, 590, 665, 859
BccI CCATC 2 cut(s) 215, 1031
BceAI ACGGC 3 cut(s) 83, 185, 551
BciVI GTATCC 1 cut(s) 727
BcoDI GTCTC 3 cut(s) 43, 208, 746
BfaI CTAG 3 cut(s) 21, 462, 516
BfmI CTRYAG 3 cut(s) 91, 564, 867
BfoI RGCGCY 2 cut(s) 33, 79
BfuI GTATCC 1 cut(s) 727
BglI GCCNNNNNGGC 1 cut(s) 1049
BisI GCNGC 9 cut(s) 91, 107, 110, 309, 576, 604, 654, 819, 873
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 9 cut(s) 92, 108, 111, 310, 577, 605, 655, 820, 874
BmcAI AGTACT 1 cut(s) 923
Bme18I GGWCC 3 cut(s) 181, 260, 746
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 9 cut(s) 15, 96, 122, 144, 181, 260, 529, 746, 1042
BmiI GGNNCC 2 cut(s) 17, 71
BmsI GCATC 4 cut(s) 376, 449, 712, 830
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 663
BpuEI CTTGAG 3 cut(s) 152, 155, 1014
BsaAI YACGTR 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 816
BsaI GGTCTC 2 cut(s) 43, 746
BsaJI CCNNGG 3 cut(s) 33, 99, 1072
BsaWI WCCGGW 1 cut(s) 900
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 549, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 93, 116
Bse118I RCCGGY 2 cut(s) 656, 900
Bse1I ACTGG 2 cut(s) 929, 1004
Bse3DI GCAATG 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 33, 99, 1072
BseGI GGATG 2 cut(s) 367, 967
BseLI CCNNNNNNNGG 3 cut(s) 61, 93, 116
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 4 cut(s) 516, 654, 678, 972
BseNI ACTGG 2 cut(s) 929, 1004
BseRI GAGGAG 1 cut(s) 573
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 6 cut(s) 77, 93, 320, 590, 665, 859
Bsh1236I CGCG 3 cut(s) 112, 192, 198
BshFI GGCC 8 cut(s) 16, 98, 124, 145, 531, 575, 986, 1043
BshTI ACCGGT 1 cut(s) 900
BsiHKAI GWGCWC 3 cut(s) 141, 502, 1089
BsiSI CCGG 6 cut(s) 73, 125, 142, 657, 901, 987
BslFI GGGAC 2 cut(s) 143, 357
BslI CCNNNNNNNGG 3 cut(s) 61, 93, 116
BsmAI GTCTC 3 cut(s) 43, 208, 746
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 2 cut(s) 143, 357
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 8 cut(s) 16, 98, 124, 145, 531, 575, 986, 1043
Bso31I GGTCTC 2 cut(s) 43, 746
Bsp1286I GDGCHC 4 cut(s) 141, 502, 795, 1089
Bsp143I GATC 4 cut(s) 163, 233, 640, 1068
Bsp1720I GCTNAGC 1 cut(s) 663
Bsp19I CCATGG 1 cut(s) 1072
BspACI CCGC 6 cut(s) 110, 120, 297, 513, 576, 819
BspANI GGCC 8 cut(s) 16, 98, 124, 145, 531, 575, 986, 1043
BspCNI CTCAG 4 cut(s) 517, 655, 679, 973
BspFNI CGCG 3 cut(s) 112, 192, 198
BspLI GGNNCC 2 cut(s) 17, 71
BspMAI CTGCAG 1 cut(s) 95
BspPI GGATC 1 cut(s) 1063
BspTNI GGTCTC 2 cut(s) 43, 746
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 656, 900
BsrI ACTGG 2 cut(s) 929, 1004
BssAI RCCGGY 2 cut(s) 656, 900
BssECI CCNNGG 3 cut(s) 33, 99, 1072
BssMI GATC 4 cut(s) 163, 233, 640, 1068
BssNI GRCGYC 1 cut(s) 816
BssT1I CCWWGG 1 cut(s) 1072
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 816
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 454
BstC8I GCNNGC 4 cut(s) 122, 196, 498, 669
BstDEI CTNAG 4 cut(s) 525, 663, 687, 981
BstDSI CCRYGG 2 cut(s) 99, 1072
BstF5I GGATG 2 cut(s) 367, 967
BstFNI CGCG 3 cut(s) 112, 192, 198
BstH2I RGCGCY 2 cut(s) 33, 79
BstHHI GCGC 5 cut(s) 32, 78, 114, 194, 200
BstKTI GATC 4 cut(s) 166, 236, 643, 1071
BstMAI GTCTC 3 cut(s) 43, 208, 746
BstMBI GATC 4 cut(s) 163, 233, 640, 1068
BstMWI GCNNNNNNNGC 8 cut(s) 401, 497, 521, 659, 668, 827, 872, 1049
BstNSI RCATGY 1 cut(s) 624
BstSFI CTRYAG 3 cut(s) 91, 564, 867
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 3 cut(s) 112, 192, 198
BstV1I GCAGC 6 cut(s) 77, 93, 320, 590, 665, 859
BstX2I RGATCY 1 cut(s) 1068
BstYI RGATCY 1 cut(s) 1068
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 8 cut(s) 16, 98, 124, 145, 531, 575, 986, 1043
BtgI CCRYGG 2 cut(s) 99, 1072
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 367, 967
BtsIMutI CAGTG 1 cut(s) 1011
Cac8I GCNNGC 4 cut(s) 122, 196, 498, 669
CaiI CAGNNNCTG 1 cut(s) 603
CfoI GCGC 5 cut(s) 32, 78, 114, 194, 200
Cfr10I RCCGGY 2 cut(s) 656, 900
Cfr13I GGNCC 9 cut(s) 15, 96, 122, 144, 181, 260, 529, 746, 1042
CseI GACGC 1 cut(s) 824
Csp6I GTAC 4 cut(s) 387, 510, 898, 922
CspAI ACCGGT 1 cut(s) 900
CviAII CATG 5 cut(s) 176, 608, 621, 799, 1073
CviQI GTAC 4 cut(s) 387, 510, 898, 922
DdeI CTNAG 4 cut(s) 525, 663, 687, 981
DpnI GATC 4 cut(s) 165, 235, 642, 1070
DpnII GATC 4 cut(s) 163, 233, 640, 1068
DraI TTTAAA 1 cut(s) 780
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 2 cut(s) 139, 500
Eco130I CCWWGG 1 cut(s) 1072
Eco24I GRGCYC 2 cut(s) 141, 502
Eco31I GGTCTC 2 cut(s) 43, 746
Eco47I GGWCC 3 cut(s) 181, 260, 746
Eco53kI GAGCTC 2 cut(s) 139, 500
Eco57I CTGAAG 3 cut(s) 10, 791, 902
Eco72I CACGTG 1 cut(s) 454
EcoICRI GAGCTC 2 cut(s) 139, 500
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 1072
EcoT22I ATGCAT 1 cut(s) 770
EcoT38I GRGCYC 2 cut(s) 141, 502
ErhI CCWWGG 1 cut(s) 1072
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 5 cut(s) 179, 611, 624, 802, 1076
FalI AAGNNNNNCTT 4 cut(s) 373, 405, 408, 440
FaqI GGGAC 2 cut(s) 143, 357
FatI CATG 5 cut(s) 175, 607, 620, 798, 1072
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 9 cut(s) 91, 107, 110, 309, 576, 604, 654, 819, 873
FokI GGATG 2 cut(s) 354, 974
FriOI GRGCYC 2 cut(s) 141, 502
Fsp4HI GCNGC 9 cut(s) 91, 107, 110, 309, 576, 604, 654, 819, 873
FspBI CTAG 3 cut(s) 21, 462, 516
GlaI GCGC 5 cut(s) 31, 77, 113, 193, 199
GluI GCNGC 9 cut(s) 91, 107, 110, 309, 576, 604, 654, 819, 873
HaeII RGCGCY 2 cut(s) 33, 79
HaeIII GGCC 8 cut(s) 16, 98, 124, 145, 531, 575, 986, 1043
HapII CCGG 6 cut(s) 73, 125, 142, 657, 901, 987
HgaI GACGC 1 cut(s) 824
HhaI GCGC 5 cut(s) 32, 78, 114, 194, 200
Hin1I GRCGYC 1 cut(s) 816
Hin1II CATG 5 cut(s) 179, 611, 624, 802, 1076
Hin6I GCGC 5 cut(s) 30, 76, 112, 192, 198
HinP1I GCGC 5 cut(s) 30, 76, 112, 192, 198
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 3 cut(s) 320, 892, 967
HpaII CCGG 6 cut(s) 73, 125, 142, 657, 901, 987
HphI GGTGA 3 cut(s) 76, 311, 824
Hpy166II GTNNAC 2 cut(s) 676, 930
Hpy188I TCNGA 4 cut(s) 415, 585, 972, 982
Hpy188III TCNNGA 3 cut(s) 134, 287, 749
Hpy8I GTNNAC 2 cut(s) 676, 930
HpyAV CCTTC 1 cut(s) 947
HpyCH4IV ACGT 2 cut(s) 57, 453
HpyCH4V TGCA 7 cut(s) 93, 308, 362, 367, 404, 428, 768
HpyF10VI GCNNNNNNNGC 8 cut(s) 401, 497, 521, 659, 668, 827, 872, 1049
HpyF3I CTNAG 4 cut(s) 525, 663, 687, 981
HpySE526I ACGT 2 cut(s) 57, 453
Hsp92I GRCGYC 1 cut(s) 816
Hsp92II CATG 5 cut(s) 179, 611, 624, 802, 1076
HspAI GCGC 5 cut(s) 30, 76, 112, 192, 198
Kzo9I GATC 4 cut(s) 163, 233, 640, 1068
LmnI GCTCC 2 cut(s) 144, 560
Lsp1109I GCAGC 6 cut(s) 77, 93, 320, 590, 665, 859
LweI GCATC 4 cut(s) 376, 449, 712, 830
MaeI CTAG 3 cut(s) 21, 462, 516
MaeII ACGT 2 cut(s) 57, 453
MaeIII GTNAC 4 cut(s) 82, 445, 610, 812
MalI GATC 4 cut(s) 165, 235, 642, 1070
MboI GATC 4 cut(s) 163, 233, 640, 1068
MboII GAAGA 3 cut(s) 428, 895, 1072
MflI RGATCY 1 cut(s) 1068
MhlI GDGCHC 4 cut(s) 141, 502, 795, 1089
MluCI AATT 4 cut(s) 6, 405, 579, 698
MmeI TCCRAC 2 cut(s) 66, 939
Mph1103I ATGCAT 1 cut(s) 770
MseI TTAA 1 cut(s) 779
MslI CAYNNNNRTG 1 cut(s) 1031
MspA1I CMGCKG 3 cut(s) 90, 311, 872
MspI CCGG 6 cut(s) 73, 125, 142, 657, 901, 987
Mva1269I GAATGC 1 cut(s) 234
MvnI CGCG 3 cut(s) 112, 192, 198
MwoI GCNNNNNNNGC 8 cut(s) 401, 497, 521, 659, 668, 827, 872, 1049
NcoI CCATGG 1 cut(s) 1072
NdeII GATC 4 cut(s) 163, 233, 640, 1068
NlaIII CATG 5 cut(s) 179, 611, 624, 802, 1076
NlaIV GGNNCC 2 cut(s) 17, 71
NmuCI GTSAC 2 cut(s) 82, 812
NsiI ATGCAT 1 cut(s) 770
NspI RCATGY 1 cut(s) 624
OliI CACNNNNGTG 1 cut(s) 1031
PciI ACATGT 1 cut(s) 620
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 320, 892, 967
PinAI ACCGGT 1 cut(s) 900
PkrI GCNGC 9 cut(s) 92, 108, 111, 310, 577, 605, 655, 820, 874
PmaCI CACGTG 1 cut(s) 454
PmlI CACGTG 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 181
PscI ACATGT 1 cut(s) 620
Psp124BI GAGCTC 2 cut(s) 141, 502
Psp5II RGGWCCY 1 cut(s) 181
PspCI CACGTG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 17, 71
PspPI GGNCC 9 cut(s) 15, 96, 122, 144, 181, 260, 529, 746, 1042
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 603
PsuI RGATCY 1 cut(s) 1068
PvuII CAGCTG 3 cut(s) 90, 311, 872
RsaI GTAC 4 cut(s) 388, 511, 899, 923
RsaNI GTAC 4 cut(s) 387, 510, 898, 922
RseI CAYNNNNRTG 1 cut(s) 1031
SacI GAGCTC 2 cut(s) 141, 502
SaqAI TTAA 1 cut(s) 779
SatI GCNGC 9 cut(s) 91, 107, 110, 309, 576, 604, 654, 819, 873
Sau3AI GATC 4 cut(s) 163, 233, 640, 1068
Sau96I GGNCC 9 cut(s) 15, 96, 122, 144, 181, 260, 529, 746, 1042
ScaI AGTACT 1 cut(s) 923
SduI GDGCHC 4 cut(s) 141, 502, 795, 1089
SfaNI GCATC 4 cut(s) 376, 449, 712, 830
SfcI CTRYAG 3 cut(s) 91, 564, 867
SinI GGWCC 3 cut(s) 181, 260, 746
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 3 cut(s) 134, 167, 1029
SmoI CTYRAG 3 cut(s) 134, 167, 1029
Sse9I AATT 4 cut(s) 6, 405, 579, 698
SsiI CCGC 6 cut(s) 110, 120, 297, 513, 576, 819
SspMI CTAG 3 cut(s) 21, 462, 516
SstI GAGCTC 2 cut(s) 141, 502
StyI CCWWGG 1 cut(s) 1072
TaiI ACGT 2 cut(s) 60, 456
TaqI TCGA 6 cut(s) 219, 328, 643, 696, 1089, 1095
TaqII GACCGA 2 cut(s) 25, 770
TasI AATT 4 cut(s) 6, 405, 579, 698
TatI WGTACW 1 cut(s) 921
TauI GCSGC 3 cut(s) 112, 578, 821
TfiI GAWTC 3 cut(s) 320, 892, 967
Tru1I TTAA 1 cut(s) 779
Tru9I TTAA 1 cut(s) 779
TscAI CASTG 1 cut(s) 1011
TseFI GTSAC 2 cut(s) 82, 812
TseI GCWGC 6 cut(s) 90, 106, 308, 603, 653, 872
Tsp45I GTSAC 2 cut(s) 82, 812
TspGWI ACGGA 1 cut(s) 927
TspRI CASTG 1 cut(s) 1011
VpaK11BI GGWCC 3 cut(s) 181, 260, 746
XapI RAATTY 2 cut(s) 6, 698
XceI RCATGY 1 cut(s) 624
XspI CTAG 3 cut(s) 21, 462, 516
ZrmI AGTACT 1 cut(s) 923
Zsp2I ATGCAT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.