Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Forward (+)

36554 .. 38483

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003031.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgactcatgttgatgcgctggttagagcgtcgcaaaggctcttagtggtgggtggtggaggagctgtaggttttgctgcagtccagcttgcagtagccgcaaggtgccatgtgactactacatgtggaagtcaaagtatagatcgagttctggctgctggtgctgagcaggctgttgactatactgctgaggacatggaaatgacaataaaggggaagtttgatgctgtcttggacaccattggtgcgccagagatggaaagaataagcataagttttttaaagaaaggcgggcactatttgacacttcaggtgggacagagaattattacttctctggaaggacctttgggtgaggcagcatctttgaccgatagatatgggatagcaatagggcttccagttgctactgctgttttactgaagaaacagatccagtactggtcttctcatggaatagagtactggtggaccttcatgagagcagactcagaagggttacatgagatccgaaggctatctgaagctggaaagttaaacatacctgtggagaaaacatttcccatcactcaagtgagagaggctcatgaggcaaaggagaagatgcagattcatggtaaagtagtgctcaaacttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

213

Amino Acids

23.16

Weight (kDa)

6.66

Isoelectric Point (pI)

26.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	105
AciI	CCGC	2 cut(s)	99, 291
AclWI	GGATC	2 cut(s)	427, 502
AcuI	CTGAAG	3 cut(s)	293, 443, 543
AfaI	GTAC	2 cut(s)	440, 464
AflIII	ACRYGT	1 cut(s)	122
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	65, 88, 527
AluI	AGCT	3 cut(s)	65, 88, 527
Alw21I	GWGCWC	1 cut(s)	630
AlwI	GGATC	2 cut(s)	427, 502
ApeKI	GCWGC	3 cut(s)	77, 155, 359
AspLEI	GCGC	2 cut(s)	19, 250
AspS9I	GGNCC	2 cut(s)	344, 471
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	2 cut(s)	344, 471
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	630
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	64, 142, 371
BccI	CCATC	2 cut(s)	250, 572
BfmI	CTRYAG	2 cut(s)	66, 78
BisI	GCNGC	4 cut(s)	78, 99, 156, 360
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	4 cut(s)	79, 100, 157, 361
BmcAI	AGTACT	2 cut(s)	440, 464
Bme18I	GGWCC	2 cut(s)	344, 471
BmgT120I	GGNCC	2 cut(s)	344, 471
BmiI	GGNNCC	1 cut(s)	107
BmsI	GCATC	4 cut(s)	4, 214, 371, 594
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse1I	ACTGG	4 cut(s)	401, 436, 446, 470
BseMII	CTCAG	3 cut(s)	156, 180, 504
BseNI	ACTGG	4 cut(s)	401, 436, 446, 470
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	64, 142, 371
BshNI	GGYRCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	297, 630
Bsp143I	GATC	3 cut(s)	142, 432, 507
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	99, 291
BspCNI	CTCAG	3 cut(s)	157, 181, 503
BspHI	TCATGA	2 cut(s)	477, 586
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	2 cut(s)	427, 502
BspT107I	GGYRCC	1 cut(s)	105
BsrI	ACTGG	4 cut(s)	401, 436, 446, 470
BssMI	GATC	3 cut(s)	142, 432, 507
BstC8I	GCNNGC	3 cut(s)	90, 171, 293
BstDEI	CTNAG	4 cut(s)	43, 165, 189, 490
BstHHI	GCGC	2 cut(s)	19, 250
BstKTI	GATC	3 cut(s)	145, 435, 510
BstMBI	GATC	3 cut(s)	142, 432, 507
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 161, 170, 590
BstNSI	RCATGY	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	66, 78
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	64, 142, 371
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	432, 507
BstYI	RGATCY	2 cut(s)	432, 507
Cac8I	GCNNGC	3 cut(s)	90, 171, 293
CciI	TCATGA	2 cut(s)	477, 586
CfoI	GCGC	2 cut(s)	19, 250
Cfr13I	GGNCC	2 cut(s)	344, 471
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	439, 463
CviAII	CATG	9 cut(s)	8, 110, 123, 196, 452, 478, 503, 587, 614
CviQI	GTAC	2 cut(s)	439, 463
DdeI	CTNAG	4 cut(s)	43, 165, 189, 490
DpnI	GATC	3 cut(s)	144, 434, 509
DpnII	GATC	3 cut(s)	142, 432, 507
DraI	TTTAAA	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	344, 471
Eco57I	CTGAAG	3 cut(s)	293, 443, 543
EcoO109I	RGGNCCY	1 cut(s)	344
FaeI	CATG	9 cut(s)	11, 113, 126, 199, 455, 481, 506, 590, 617
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	9 cut(s)	7, 109, 122, 195, 451, 477, 502, 586, 613
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	78, 99, 156, 360
Fsp4HI	GCNGC	4 cut(s)	78, 99, 156, 360
GlaI	GCGC	2 cut(s)	18, 249
GluI	GCNGC	4 cut(s)	78, 99, 156, 360
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	19, 250
Hin1II	CATG	9 cut(s)	11, 113, 126, 199, 455, 481, 506, 590, 617
Hin6I	GCGC	2 cut(s)	17, 248
HinP1I	GCGC	2 cut(s)	17, 248
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	4, 488, 610
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	178, 471
Hpy188I	TCNGA	3 cut(s)	493, 512, 523
Hpy188III	TCNNGA	3 cut(s)	338, 478, 587
Hpy8I	GTNNAC	2 cut(s)	178, 471
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	335, 484, 488, 507
HpyCH4V	TGCA	3 cut(s)	80, 92, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 161, 170, 590
HpyF3I	CTNAG	4 cut(s)	43, 165, 189, 490
Hsp92II	CATG	9 cut(s)	11, 113, 126, 199, 455, 481, 506, 590, 617
HspAI	GCGC	2 cut(s)	17, 248
Kzo9I	GATC	3 cut(s)	142, 432, 507
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	3 cut(s)	64, 142, 371
LweI	GCATC	4 cut(s)	4, 214, 371, 594
MaeIII	GTNAC	2 cut(s)	112, 498
MalI	GATC	3 cut(s)	144, 434, 509
MboI	GATC	3 cut(s)	142, 432, 507
MboII	GAAGA	3 cut(s)	436, 438, 613
MflI	RGATCY	2 cut(s)	432, 507
MhlI	GDGCHC	2 cut(s)	297, 630
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	53, 184, 349, 574, 583
MseI	TTAA	2 cut(s)	281, 536
MslI	CAYNNNNRTG	4 cut(s)	12, 200, 545, 572
MwoI	GCNNNNNNNGC	4 cut(s)	98, 161, 170, 590
NdeII	GATC	3 cut(s)	142, 432, 507
NlaIII	CATG	9 cut(s)	11, 113, 126, 199, 455, 481, 506, 590, 617
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	126
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	2 cut(s)	477, 586
PciI	ACATGT	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	79, 100, 157, 361
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	344
PscI	ACATGT	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	344, 471
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	432, 507
RsaI	GTAC	2 cut(s)	440, 464
RsaNI	GTAC	2 cut(s)	439, 463
RseI	CAYNNNNRTG	4 cut(s)	12, 200, 545, 572
SaqAI	TTAA	2 cut(s)	281, 536
SatI	GCNGC	4 cut(s)	78, 99, 156, 360
Sau3AI	GATC	3 cut(s)	142, 432, 507
Sau96I	GGNCC	2 cut(s)	344, 471
ScaI	AGTACT	2 cut(s)	440, 464
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	297, 630
SetI	ASST	9 cut(s)	67, 73, 90, 107, 315, 349, 476, 529, 547
SfaNI	GCATC	4 cut(s)	4, 214, 371, 594
SfcI	CTRYAG	2 cut(s)	66, 78
SinI	GGWCC	2 cut(s)	344, 471
SmiMI	CAYNNNNRTG	4 cut(s)	12, 200, 545, 572
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	99, 291
TaqI	TCGA	1 cut(s)	145
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	1 cut(s)	324
TatI	WGTACW	2 cut(s)	438, 462
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	281, 536
Tru9I	TTAA	2 cut(s)	281, 536
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	77, 155, 359
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	466, 602
VpaK11BI	GGWCC	2 cut(s)	344, 471
XceI	RCATGY	1 cut(s)	126
ZrmI	AGTACT	2 cut(s)	440, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.