Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Forward (+)

25722888 .. 25731242

Gene Structure 8355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCGGTCTGGCTATGGTCGTTCAATATTTGGACCTCTGCTTCCTCTAATTCTGGGACGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAGCTTCAGTTAAGGGACTTACTGTAGGACAAGAAGTTTTTGGTGCATTGCATCCGACTGCTGTGAGGGGTACTTATACTGATTATGCAATTCTTTCAGAAGATGAACTTGCTCCAAAACCAGCGTCAATTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCGTTGACTGCTTGGCGTGCTCTAAAAGGTACTGCAAGGATATCTGAGGGGCAAAGGCTCTTAGTGGTGGGTGGTGGAGGAGCTGTAGGTTTTGCTGCAGTCCAGCTTGCAGTAGCCGCAAGGTGCCATGCTGTTGACTATACCGCTGAGGATATGGCATTGACAATAAAGGGGAAGTTTGATGCTGTCTTGGACACCATTGGTGGGTCAGAGACGGAAAGAATAAGTGTAAGTTTGTTAAAGAAAGGCAGACACTATATGACACTTCAGGGTGAGGCAGCATCTTTGACTGATAGATATGGGACAGCAATTGGGCTTCCAGTTGCTAGTGCTGTTTTACTGAAGAAACAGATCCAGTACCGGTCTTCTCATGGAATAGAGTACTGGTGGACCTTCATGAGAGCAGATTCAGAAGGGTTACATAAGATCCGGAGGCTATCTGAAGCTGGAAAGTTAAACATACCTGTGGAGAAAACATTTCCCATCACTCAAGTGAGAGAGGCTCATGAGGCAAAGGAGAAGAAGCAGATTTATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

263

Amino Acids

28.18

Weight (kDa)

9.21

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	12 - 70	9.2e-08	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N_2	PF13602	127 - 261	1.9e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AccIII	TCCGGA	1 cut(s)	681
AciI	CCGC	3 cut(s)	4, 369, 396
AclWI	GGATC	2 cut(s)	598, 673
AcuI	CTGAAG	4 cut(s)	78, 503, 614, 714
AfaI	GTAC	4 cut(s)	160, 283, 611, 635
AfiI	CCNNNNNNNGG	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	612
AgsI	TTSAA	1 cut(s)	24
AjiI	CACGTC	1 cut(s)	59
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	5 cut(s)	83, 92, 335, 358, 698
AluI	AGCT	5 cut(s)	83, 92, 335, 358, 698
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	598, 673
Aor13HI	TCCGGA	1 cut(s)	681
ApeKI	GCWGC	4 cut(s)	80, 251, 347, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AsiGI	ACCGGT	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	32, 642
AsuHPI	GGTGA	2 cut(s)	83, 536
AvaII	GGWCC	2 cut(s)	32, 642
BanI	GGYRCC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	92, 238, 334, 542
BccI	CCATC	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	3 cut(s)	111, 336, 348
BisI	GCNGC	5 cut(s)	81, 252, 348, 369, 531
BlsI	GCNGC	5 cut(s)	82, 253, 349, 370, 532
BmcAI	AGTACT	1 cut(s)	635
Bme18I	GGWCC	2 cut(s)	32, 642
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	32, 642
BmiI	GGNNCC	1 cut(s)	377
BmsI	GCATC	3 cut(s)	148, 424, 542
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	726
BsaWI	WCCGGW	2 cut(s)	612, 681
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	3 cut(s)	572, 607, 641
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	681
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	288, 390
BseNI	ACTGG	3 cut(s)	572, 607, 641
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	92, 238, 334, 542
BshNI	GGYRCC	1 cut(s)	375
BshTI	ACCGGT	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	613, 682
BslFI	GGGAC	3 cut(s)	69, 117, 568
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	3 cut(s)	69, 117, 568
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp13I	TCCGGA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	603, 678
BspACI	CCGC	3 cut(s)	4, 369, 396
BspCNI	CTCAG	2 cut(s)	289, 391
BspEI	TCCGGA	1 cut(s)	681
BspHI	TCATGA	2 cut(s)	648, 757
BspLI	GGNNCC	1 cut(s)	377
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	2 cut(s)	598, 673
BspT107I	GGYRCC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	572, 607, 641
BssAI	RCCGGY	1 cut(s)	612
BssMI	GATC	2 cut(s)	603, 678
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	270, 360
BstDEI	CTNAG	3 cut(s)	297, 313, 399
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	606, 681
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	603, 678
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 260, 269, 368, 761
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	3 cut(s)	111, 336, 348
BstV1I	GCAGC	4 cut(s)	92, 238, 334, 542
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	2 cut(s)	603, 678
BstYI	RGATCY	2 cut(s)	603, 678
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	270, 360
CciI	TCATGA	2 cut(s)	648, 757
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	2 cut(s)	32, 642
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	4 cut(s)	159, 282, 610, 634
CspAI	ACCGGT	1 cut(s)	612
CviAII	CATG	5 cut(s)	224, 380, 623, 649, 758
CviQI	GTAC	4 cut(s)	159, 282, 610, 634
DdeI	CTNAG	3 cut(s)	297, 313, 399
DpnI	GATC	2 cut(s)	605, 680
DpnII	GATC	2 cut(s)	603, 678
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	2 cut(s)	32, 642
Eco57I	CTGAAG	4 cut(s)	78, 503, 614, 714
EcoRV	GATATC	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	5 cut(s)	227, 383, 626, 652, 761
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	3 cut(s)	69, 117, 568
FatI	CATG	5 cut(s)	223, 379, 622, 648, 757
Fnu4HI	GCNGC	5 cut(s)	81, 252, 348, 369, 531
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	81, 252, 348, 369, 531
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	5 cut(s)	81, 252, 348, 369, 531
HapII	CCGG	2 cut(s)	613, 682
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	227, 383, 626, 652, 761
HincII	GTYRAC	2 cut(s)	258, 388
HindII	GTYRAC	2 cut(s)	258, 388
HinfI	GANTC	1 cut(s)	659
HpaII	CCGG	2 cut(s)	613, 682
HphI	GGTGA	2 cut(s)	83, 536
Hpy166II	GTNNAC	3 cut(s)	258, 388, 642
Hpy188I	TCNGA	6 cut(s)	144, 187, 298, 463, 664, 694
Hpy188III	TCNNGA	3 cut(s)	649, 682, 758
Hpy8I	GTNNAC	3 cut(s)	258, 388, 642
HpyAV	CCTTC	2 cut(s)	655, 659
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	7 cut(s)	80, 134, 139, 176, 287, 350, 362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 260, 269, 368, 761
HpyF3I	CTNAG	3 cut(s)	297, 313, 399
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	5 cut(s)	227, 383, 626, 652, 761
Kpn2I	TCCGGA	1 cut(s)	681
Kzo9I	GATC	2 cut(s)	603, 678
LmnI	GCTCC	3 cut(s)	89, 205, 332
Lsp1109I	GCAGC	4 cut(s)	92, 238, 334, 542
LweI	GCATC	3 cut(s)	148, 424, 542
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	669
MalI	GATC	2 cut(s)	605, 680
MboI	GATC	2 cut(s)	603, 678
MboII	GAAGA	4 cut(s)	200, 607, 609, 784
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	603, 678
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	4 cut(s)	48, 177, 216, 561
MmeI	TCCRAC	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	681
MseI	TTAA	4 cut(s)	99, 491, 707, 790
MslI	CAYNNNNRTG	2 cut(s)	716, 743
MspA1I	CMGCKG	2 cut(s)	83, 398
MspI	CCGG	2 cut(s)	613, 682
MunI	CAATTG	1 cut(s)	561
MwoI	GCNNNNNNNGC	5 cut(s)	89, 260, 269, 368, 761
NdeII	GATC	2 cut(s)	603, 678
NlaIII	CATG	5 cut(s)	227, 383, 626, 652, 761
NlaIV	GGNNCC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	743
PagI	TCATGA	2 cut(s)	648, 757
PciI	ACATGT	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	659
PinAI	ACCGGT	1 cut(s)	612
PkrI	GCNGC	5 cut(s)	82, 253, 349, 370, 532
PscI	ACATGT	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	2 cut(s)	32, 642
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	603, 678
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	4 cut(s)	160, 283, 611, 635
RsaNI	GTAC	4 cut(s)	159, 282, 610, 634
RseI	CAYNNNNRTG	2 cut(s)	716, 743
SaqAI	TTAA	4 cut(s)	99, 491, 707, 790
SatI	GCNGC	5 cut(s)	81, 252, 348, 369, 531
Sau3AI	GATC	2 cut(s)	603, 678
Sau96I	GGNCC	2 cut(s)	32, 642
ScaI	AGTACT	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	3 cut(s)	148, 424, 542
SfcI	CTRYAG	3 cut(s)	111, 336, 348
SinI	GGWCC	2 cut(s)	32, 642
SmiMI	CAYNNNNRTG	2 cut(s)	716, 743
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
Sse9I	AATT	4 cut(s)	48, 177, 216, 561
SsiI	CCGC	3 cut(s)	4, 369, 396
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	61
TasI	AATT	4 cut(s)	48, 177, 216, 561
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	4 cut(s)	99, 491, 707, 790
Tru9I	TTAA	4 cut(s)	99, 491, 707, 790
TseI	GCWGC	4 cut(s)	80, 251, 347, 530
TspDTI	ATGAA	2 cut(s)	207, 637
TspGWI	ACGGA	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	32, 642
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	1 cut(s)	579
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.