Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Forward (+)

26823658 .. 26827540

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G020360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCGGTCTGGCCATGGTCGTTCAATATTTGGACCTCTGCTTCCTCTAATTCTGGGACGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAGCTTCAGTTAAGGGACTTACTGTAGGACAAGAAGTTTTTGGTGCATTGCATCCGACTGCTGTGAGGGGTACTTATACTGATTATGCAATTCTTTCAGAAGATGAACTTGCTCCAAAACCAGCGTCAATTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCGTTGACTGCTTGGCGTGCTCTAAAAGGTACTGCAAGGATATCTGAGGGGCAAAGGCTCTTAGTGGTGGGTGGTGGAGGAGCTGTAGGTTTTGCTGCAGTCCAGCTTGCAGTAGCCGCAAGGTGCCATGTTACTACTACATGTGGAAGCCAAAGTTTAGATCGACTTTTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACCGCTGAGGACATGGAAATGACAATAAAGGGGAAGTTTGATGCTGTCTTGGACACCATTGGTGGGCCAGAGACAGAAAGAATAAGCATAAGTTTTTTAAAGAAAGGCGGGCATTATATGACGCTTCAGGGTGAGGCAGCATCTTTGACTGATAGATATGGGATAGCAATTGGGCTTCCAGTTGCTACTGCTGTTTTACTGAAGAAACAGATCCAGTACCGGTCTTCTCATGGAATAGAGTACTGGTGGACCTTCATGAGAGCAGACTCAGAAGGGTTACATGAGATCCGAAGGCTATCTGAAGCTGGAAAGTTAAACATACCTGTGGAGAAAACATTTCCCATCACTCAAGTGAGAGAGGCTCATGAGGCAAAGGAGAAGAAGCAGATTCATGGTAAAGTAGTGCTCAAACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

290

Amino Acids

30.99

Weight (kDa)

7.82

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	12 - 70	1.1e-07	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	112 - 210	4.4e-12	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	144 - 287	4e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AciI	CCGC	4 cut(s)	4, 369, 456, 561
AclWI	GGATC	2 cut(s)	658, 733
AcoI	YGGCCR	1 cut(s)	10
AcuI	CTGAAG	4 cut(s)	78, 563, 674, 774
AfaI	GTAC	4 cut(s)	160, 283, 671, 695
AfiI	CCNNNNNNNGG	1 cut(s)	516
AflIII	ACRYGT	2 cut(s)	223, 392
AgeI	ACCGGT	1 cut(s)	672
AgsI	TTSAA	1 cut(s)	24
AjiI	CACGTC	1 cut(s)	59
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	6 cut(s)	83, 92, 335, 358, 428, 758
AluI	AGCT	6 cut(s)	83, 92, 335, 358, 428, 758
Alw21I	GWGCWC	2 cut(s)	274, 861
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	2 cut(s)	658, 733
AoxI	GGCC	2 cut(s)	10, 518
ApeKI	GCWGC	5 cut(s)	80, 251, 347, 425, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AsiGI	ACCGGT	1 cut(s)	672
AspS9I	GGNCC	3 cut(s)	32, 518, 702
AsuHPI	GGTGA	2 cut(s)	83, 596
AvaII	GGWCC	2 cut(s)	32, 702
BalI	TGGCCA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	274, 861
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	5 cut(s)	92, 238, 334, 437, 602
BccI	CCATC	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	518
BfmI	CTRYAG	3 cut(s)	111, 336, 348
BisI	GCNGC	6 cut(s)	81, 252, 348, 369, 426, 591
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	6 cut(s)	82, 253, 349, 370, 427, 592
BmcAI	AGTACT	1 cut(s)	695
Bme18I	GGWCC	2 cut(s)	32, 702
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	32, 518, 702
BmiI	GGNNCC	1 cut(s)	377
BmsI	GCATC	3 cut(s)	148, 484, 602
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	799, 831
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	672
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	3 cut(s)	632, 667, 701
Bse3DI	GCAATG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	4 cut(s)	288, 426, 450, 735
BseNI	ACTGG	3 cut(s)	632, 667, 701
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	5 cut(s)	92, 238, 334, 437, 602
BshFI	GGCC	2 cut(s)	12, 520
BshNI	GGYRCC	1 cut(s)	375
BshTI	ACCGGT	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	274, 861
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	69, 117
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	69, 117
BsnI	GGCC	2 cut(s)	12, 520
Bsp1286I	GDGCHC	2 cut(s)	274, 861
Bsp143I	GATC	3 cut(s)	412, 663, 738
Bsp1720I	GCTNAGC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	4 cut(s)	4, 369, 456, 561
BspANI	GGCC	2 cut(s)	12, 520
BspCNI	CTCAG	4 cut(s)	289, 427, 451, 734
BspHI	TCATGA	2 cut(s)	708, 817
BspLI	GGNNCC	1 cut(s)	377
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	2 cut(s)	658, 733
BspT107I	GGYRCC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	632, 667, 701
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	412, 663, 738
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	270, 360, 441, 563
BstDEI	CTNAG	5 cut(s)	297, 313, 435, 459, 721
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	415, 666, 741
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	3 cut(s)	412, 663, 738
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 260, 269, 368, 431, 440, 821
BstNSI	RCATGY	2 cut(s)	227, 396
BstSFI	CTRYAG	3 cut(s)	111, 336, 348
BstV1I	GCAGC	5 cut(s)	92, 238, 334, 437, 602
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	2 cut(s)	663, 738
BstYI	RGATCY	2 cut(s)	663, 738
BsuRI	GGCC	2 cut(s)	12, 520
BtgI	CCRYGG	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	4 cut(s)	270, 360, 441, 563
CciI	TCATGA	2 cut(s)	708, 817
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	3 cut(s)	32, 518, 702
CseI	GACGC	2 cut(s)	201, 583
Csp6I	GTAC	4 cut(s)	159, 282, 670, 694
CspAI	ACCGGT	1 cut(s)	672
CviQI	GTAC	4 cut(s)	159, 282, 670, 694
DdeI	CTNAG	5 cut(s)	297, 313, 435, 459, 721
DpnI	GATC	3 cut(s)	414, 665, 740
DpnII	GATC	3 cut(s)	412, 663, 738
DraI	TTTAAA	1 cut(s)	552
EaeI	YGGCCR	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	2 cut(s)	32, 702
Eco57I	CTGAAG	4 cut(s)	78, 563, 674, 774
EcoRV	GATATC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	2 cut(s)	69, 117
FauI	CCCGC	1 cut(s)	554
Fnu4HI	GCNGC	6 cut(s)	81, 252, 348, 369, 426, 591
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	6 cut(s)	81, 252, 348, 369, 426, 591
GluI	GCNGC	6 cut(s)	81, 252, 348, 369, 426, 591
HaeIII	GGCC	2 cut(s)	12, 520
HapII	CCGG	1 cut(s)	673
HgaI	GACGC	2 cut(s)	201, 583
HincII	GTYRAC	2 cut(s)	258, 448
HindII	GTYRAC	2 cut(s)	258, 448
HinfI	GANTC	2 cut(s)	719, 841
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	2 cut(s)	83, 596
Hpy166II	GTNNAC	3 cut(s)	258, 448, 702
Hpy188I	TCNGA	6 cut(s)	144, 187, 298, 724, 743, 754
Hpy188III	TCNNGA	2 cut(s)	709, 818
Hpy8I	GTNNAC	3 cut(s)	258, 448, 702
HpyAV	CCTTC	3 cut(s)	715, 719, 738
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	7 cut(s)	80, 134, 139, 176, 287, 350, 362
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 260, 269, 368, 431, 440, 821
HpyF3I	CTNAG	5 cut(s)	297, 313, 435, 459, 721
HpySE526I	ACGT	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	412, 663, 738
LmnI	GCTCC	3 cut(s)	89, 205, 332
Lsp1109I	GCAGC	5 cut(s)	92, 238, 334, 437, 602
LweI	GCATC	3 cut(s)	148, 484, 602
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	382, 729
MalI	GATC	3 cut(s)	414, 665, 740
MboI	GATC	3 cut(s)	412, 663, 738
MboII	GAAGA	4 cut(s)	200, 667, 669, 844
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	2 cut(s)	663, 738
MhlI	GDGCHC	2 cut(s)	274, 861
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	4 cut(s)	48, 177, 216, 621
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	45, 54, 147, 292, 323, 454, 580, 805, 814
Mox20I	TGGCCA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	3 cut(s)	99, 551, 767
MslI	CAYNNNNRTG	3 cut(s)	470, 776, 803
Msp20I	TGGCCA	1 cut(s)	12
MspA1I	CMGCKG	3 cut(s)	83, 428, 458
MspI	CCGG	1 cut(s)	673
MunI	CAATTG	1 cut(s)	621
MwoI	GCNNNNNNNGC	7 cut(s)	89, 260, 269, 368, 431, 440, 821
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	412, 663, 738
NlaIV	GGNNCC	1 cut(s)	377
NspI	RCATGY	2 cut(s)	227, 396
OliI	CACNNNNGTG	1 cut(s)	803
PagI	TCATGA	2 cut(s)	708, 817
PciI	ACATGT	2 cut(s)	223, 392
PfeI	GAWTC	1 cut(s)	841
PinAI	ACCGGT	1 cut(s)	672
PkrI	GCNGC	6 cut(s)	82, 253, 349, 370, 427, 592
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PscI	ACATGT	2 cut(s)	223, 392
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	3 cut(s)	32, 518, 702
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	663, 738
PvuII	CAGCTG	2 cut(s)	83, 428
RsaI	GTAC	4 cut(s)	160, 283, 671, 695
RsaNI	GTAC	4 cut(s)	159, 282, 670, 694
RseI	CAYNNNNRTG	3 cut(s)	470, 776, 803
SaqAI	TTAA	3 cut(s)	99, 551, 767
SatI	GCNGC	6 cut(s)	81, 252, 348, 369, 426, 591
Sau3AI	GATC	3 cut(s)	412, 663, 738
Sau96I	GGNCC	3 cut(s)	32, 518, 702
ScaI	AGTACT	1 cut(s)	695
SchI	GAGTC	1 cut(s)	713
SduI	GDGCHC	2 cut(s)	274, 861
SfaNI	GCATC	3 cut(s)	148, 484, 602
SfcI	CTRYAG	3 cut(s)	111, 336, 348
SinI	GGWCC	2 cut(s)	32, 702
SmiMI	CAYNNNNRTG	3 cut(s)	470, 776, 803
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	4 cut(s)	48, 177, 216, 621
SsiI	CCGC	4 cut(s)	4, 369, 456, 561
SspI	AATATT	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	48, 177, 216, 621
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	841
Tru1I	TTAA	3 cut(s)	99, 551, 767
Tru9I	TTAA	3 cut(s)	99, 551, 767
TseI	GCWGC	5 cut(s)	80, 251, 347, 425, 590
TspDTI	ATGAA	3 cut(s)	207, 697, 833
VpaK11BI	GGWCC	2 cut(s)	32, 702
XceI	RCATGY	2 cut(s)	227, 396
ZrmI	AGTACT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.