Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Forward (+)

25744899 .. 25893904

Gene Structure 149006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG246600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGATACTGAGGTCACATGGCGGCTTCAAAGTCTCAATCTTTGAGTCCCATCACTCCAAGGTTGGGCTGCGCCACATCGCCACCGCCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCTGAGGTTCTGGAGCTCCGGCCCATTGTCGACGTTCCTGATCTCAAGCCCAATGAGGTCCTCGTTCGCACTCGCGCCGTCTCAATCAATCCCCTTGATACCAGAATGCGGTCTGGCTATGGTCGTTCAATATTTGGACCTCTGCTTCCTCTAATTCTGGGACGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAGCTTCAGTTAAGGGACTTACTGTAGGACAAGAAGTTTTTGGTGCATTGCATCCGACTGCTGTGAGGGGTACTTATACTGATTATGCAATTCTTTCAGAAGATGAACTTGCACCAAAACCAGCGTCAATTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCGTTGACTGCTTGGCGTGCTCTAAAAGGTACTGCAAGGATATCTGAGGGGCAAAGGCTCTTAGTGGTGGGAGGTGGAGGAGCTGTAGGTTTTGCTGCAGTCCAGCTTGCAGTAGCCGCAAGGTGCCATGTTACTACTACATGTGGAAGCCAAAGTTTAGATCGAGTTTTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACCGCTGAGGACATGGAAATGACAATAAAGGGGAAGTTTGATGCTGTCTTGGACACCATTGGTGGGCCAGAGACGGAAAGAATAAGCATAAGTTTTTTAAAGAAAGGCGGGCACTATATGACACTTCAGGGTGAGGCAGCATCTTTGACTGATAGATATGGGATAGCAATTGGGCTTCCAGTTGCTACTGCTGTTTTACTGAAGAAACAGATCCAGTACCGGTCTTCTCATGGAATAGAGTACTGGTGGACCTTCATGAGAGCAGACTCAGTAGGGTTACATGAGATCCGAAGGCTATCTGAAGCTGGAAAGTTAAACATACCTGTGGAGAAAACATTTCCCATCACTCAAGTGAGAGAGGCTCATGAGGCAAAGGAGAAGAAGCAGATTCATGGTAAAGTAGTGCTCAAACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

366

Amino Acids

39.33

Weight (kDa)

9.14

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	57 - 146	3.9e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	188 - 286	6.1e-12	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	220 - 363	4.5e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	112, 198
AciI	CCGC	8 cut(s)	24, 87, 110, 120, 232, 597, 684, 789
AclWI	GGATC	2 cut(s)	886, 961
AcuI	CTGAAG	4 cut(s)	306, 791, 902, 1002
AfaI	GTAC	4 cut(s)	388, 511, 899, 923
AfiI	CCNNNNNNNGG	4 cut(s)	66, 116, 231, 744
AflIII	ACRYGT	2 cut(s)	451, 620
AgeI	ACCGGT	1 cut(s)	900
AgsI	TTSAA	2 cut(s)	31, 252
AjiI	CACGTC	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	1031
AluBI	AGCT	7 cut(s)	139, 311, 320, 563, 586, 656, 986
AluI	AGCT	7 cut(s)	139, 311, 320, 563, 586, 656, 986
Alw21I	GWGCWC	3 cut(s)	141, 502, 1089
Alw26I	GTCTC	3 cut(s)	40, 208, 746
AlwI	GGATC	2 cut(s)	886, 961
AoxI	GGCC	3 cut(s)	122, 143, 746
ApeKI	GCWGC	7 cut(s)	70, 106, 308, 479, 575, 653, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	900
AspLEI	GCGC	3 cut(s)	75, 114, 200
AspS9I	GGNCC	6 cut(s)	122, 144, 181, 260, 746, 930
AsuHPI	GGTGA	2 cut(s)	311, 824
AvaII	GGWCC	3 cut(s)	181, 260, 930
AxyI	CCTNAGG	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	795
BaeI	ACNNNNGTAYC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	3 cut(s)	141, 502, 1089
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	7 cut(s)	57, 93, 320, 466, 562, 665, 830
BccI	CCATC	2 cut(s)	60, 1031
BceAI	ACGGC	2 cut(s)	83, 185
BcoDI	GTCTC	3 cut(s)	40, 208, 746
BfmI	CTRYAG	4 cut(s)	91, 339, 564, 576
BlpI	GCTNAGC	1 cut(s)	663
BmcAI	AGTACT	1 cut(s)	923
Bme18I	GGWCC	3 cut(s)	181, 260, 930
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	6 cut(s)	122, 144, 181, 260, 746, 930
BmiI	GGNNCC	1 cut(s)	605
BmsI	GCATC	3 cut(s)	376, 712, 830
BpiI	GAAGAC	1 cut(s)	897
BplI	GAGNNNNNCTC	2 cut(s)	1027, 1059
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	152, 1014
BsaJI	CCNNGG	2 cut(s)	60, 99
BsaWI	WCCGGW	1 cut(s)	900
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 116, 231, 744
Bse118I	RCCGGY	1 cut(s)	900
Bse1I	ACTGG	3 cut(s)	860, 895, 929
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	60, 99
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	4 cut(s)	66, 116, 231, 744
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	5 cut(s)	117, 516, 654, 678, 963
BseNI	ACTGG	3 cut(s)	860, 895, 929
BseRI	GAGGAG	1 cut(s)	573
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	7 cut(s)	57, 93, 320, 466, 562, 665, 830
Bsh1236I	CGCG	2 cut(s)	112, 198
BshFI	GGCC	3 cut(s)	124, 145, 748
BshNI	GGYRCC	1 cut(s)	603
BshTI	ACCGGT	1 cut(s)	900
BsiHKAI	GWGCWC	3 cut(s)	141, 502, 1089
BsiSI	CCGG	2 cut(s)	142, 901
BslFI	GGGAC	3 cut(s)	34, 297, 345
BslI	CCNNNNNNNGG	4 cut(s)	66, 116, 231, 744
BsmAI	GTCTC	3 cut(s)	40, 208, 746
BsmBI	CGTCTC	2 cut(s)	208, 746
BsmFI	GGGAC	3 cut(s)	34, 297, 345
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	124, 145, 748
Bsp1286I	GDGCHC	4 cut(s)	141, 502, 795, 1089
Bsp143I	GATC	4 cut(s)	163, 640, 891, 966
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	8 cut(s)	24, 87, 110, 120, 232, 597, 684, 789
BspANI	GGCC	3 cut(s)	124, 145, 748
BspCNI	CTCAG	5 cut(s)	118, 517, 655, 679, 962
BspFNI	CGCG	2 cut(s)	112, 198
BspHI	TCATGA	2 cut(s)	936, 1045
BspLI	GGNNCC	1 cut(s)	605
BspMAI	CTGCAG	2 cut(s)	95, 580
BspPI	GGATC	2 cut(s)	886, 961
BspT107I	GGYRCC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	900
BsrI	ACTGG	3 cut(s)	860, 895, 929
BssAI	RCCGGY	1 cut(s)	900
BssECI	CCNNGG	2 cut(s)	60, 99
BssMI	GATC	4 cut(s)	163, 640, 891, 966
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	6 cut(s)	91, 122, 498, 588, 669, 791
BstDEI	CTNAG	7 cut(s)	11, 126, 525, 541, 663, 687, 949
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	2 cut(s)	112, 198
BstHHI	GCGC	3 cut(s)	75, 114, 200
BstKTI	GATC	4 cut(s)	166, 643, 894, 969
BstMAI	GTCTC	3 cut(s)	40, 208, 746
BstMBI	GATC	4 cut(s)	163, 640, 891, 966
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 317, 488, 497, 596, 659, 668, 1049
BstNSI	RCATGY	2 cut(s)	455, 624
BstSFI	CTRYAG	4 cut(s)	91, 339, 564, 576
BstSLI	GKGCMC	1 cut(s)	795
BstUI	CGCG	2 cut(s)	112, 198
BstV1I	GCAGC	7 cut(s)	57, 93, 320, 466, 562, 665, 830
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	2 cut(s)	891, 966
BstYI	RGATCY	2 cut(s)	891, 966
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	124, 145, 748
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	6 cut(s)	91, 122, 498, 588, 669, 791
CciI	TCATGA	2 cut(s)	936, 1045
CfoI	GCGC	3 cut(s)	75, 114, 200
Cfr10I	RCCGGY	1 cut(s)	900
Cfr13I	GGNCC	6 cut(s)	122, 144, 181, 260, 746, 930
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	4 cut(s)	387, 510, 898, 922
CspAI	ACCGGT	1 cut(s)	900
CviQI	GTAC	4 cut(s)	387, 510, 898, 922
DdeI	CTNAG	7 cut(s)	11, 126, 525, 541, 663, 687, 949
DpnI	GATC	4 cut(s)	165, 642, 893, 968
DpnII	GATC	4 cut(s)	163, 640, 891, 966
DraI	TTTAAA	1 cut(s)	780
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	3 cut(s)	181, 260, 930
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	4 cut(s)	306, 791, 902, 1002
Eco81I	CCTNAGG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	2 cut(s)	208, 746
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	3 cut(s)	34, 297, 345
FauI	CCCGC	2 cut(s)	113, 782
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	141
GlaI	GCGC	3 cut(s)	74, 113, 199
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	124, 145, 748
HapII	CCGG	2 cut(s)	142, 901
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	3 cut(s)	75, 114, 200
Hin6I	GCGC	3 cut(s)	73, 112, 198
HinP1I	GCGC	3 cut(s)	73, 112, 198
HincII	GTYRAC	3 cut(s)	154, 486, 676
HindII	GTYRAC	3 cut(s)	154, 486, 676
HinfI	GANTC	3 cut(s)	47, 947, 1069
HpaII	CCGG	2 cut(s)	142, 901
HphI	GGTGA	2 cut(s)	311, 824
Hpy166II	GTNNAC	4 cut(s)	154, 486, 676, 930
Hpy188I	TCNGA	5 cut(s)	372, 415, 526, 971, 982
Hpy188III	TCNNGA	4 cut(s)	134, 161, 937, 1046
Hpy8I	GTNNAC	4 cut(s)	154, 486, 676, 930
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	943, 966
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	156, 286
HpyCH4V	TGCA	9 cut(s)	93, 308, 362, 367, 404, 428, 515, 578, 590
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 317, 488, 497, 596, 659, 668, 1049
HpyF3I	CTNAG	7 cut(s)	11, 126, 525, 541, 663, 687, 949
HpySE526I	ACGT	2 cut(s)	156, 286
HspAI	GCGC	3 cut(s)	73, 112, 198
Kzo9I	GATC	4 cut(s)	163, 640, 891, 966
LmnI	GCTCC	4 cut(s)	136, 144, 317, 560
Lsp1109I	GCAGC	7 cut(s)	57, 93, 320, 466, 562, 665, 830
LweI	GCATC	3 cut(s)	376, 712, 830
MaeII	ACGT	2 cut(s)	156, 286
MaeIII	GTNAC	3 cut(s)	15, 610, 957
MalI	GATC	4 cut(s)	165, 642, 893, 968
MboI	GATC	4 cut(s)	163, 640, 891, 966
MboII	GAAGA	4 cut(s)	428, 895, 897, 1072
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	2 cut(s)	891, 966
MhlI	GDGCHC	4 cut(s)	141, 502, 795, 1089
MluCI	AATT	4 cut(s)	276, 405, 444, 849
MlyI	GAGTC	2 cut(s)	56, 941
MmeI	TCCRAC	1 cut(s)	395
MseI	TTAA	3 cut(s)	327, 779, 995
MslI	CAYNNNNRTG	3 cut(s)	698, 1004, 1031
MspA1I	CMGCKG	3 cut(s)	311, 656, 686
MspI	CCGG	2 cut(s)	142, 901
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	234
MvnI	CGCG	2 cut(s)	112, 198
MwoI	GCNNNNNNNGC	8 cut(s)	95, 317, 488, 497, 596, 659, 668, 1049
NdeII	GATC	4 cut(s)	163, 640, 891, 966
NlaIV	GGNNCC	1 cut(s)	605
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	2 cut(s)	455, 624
OliI	CACNNNNGTG	1 cut(s)	1031
PagI	TCATGA	2 cut(s)	936, 1045
PciI	ACATGT	2 cut(s)	451, 620
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	1069
PinAI	ACCGGT	1 cut(s)	900
PleI	GAGTC	2 cut(s)	55, 941
PpsI	GAGTC	2 cut(s)	55, 941
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	2 cut(s)	451, 620
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	6 cut(s)	122, 144, 181, 260, 746, 930
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	2 cut(s)	95, 580
PsuI	RGATCY	2 cut(s)	891, 966
PvuII	CAGCTG	2 cut(s)	311, 656
RsaI	GTAC	4 cut(s)	388, 511, 899, 923
RsaNI	GTAC	4 cut(s)	387, 510, 898, 922
RseI	CAYNNNNRTG	3 cut(s)	698, 1004, 1031
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	327, 779, 995
Sau3AI	GATC	4 cut(s)	163, 640, 891, 966
Sau96I	GGNCC	6 cut(s)	122, 144, 181, 260, 746, 930
ScaI	AGTACT	1 cut(s)	923
SchI	GAGTC	2 cut(s)	56, 941
SduI	GDGCHC	4 cut(s)	141, 502, 795, 1089
SfaNI	GCATC	3 cut(s)	376, 712, 830
SfcI	CTRYAG	4 cut(s)	91, 339, 564, 576
SinI	GGWCC	3 cut(s)	181, 260, 930
SmiMI	CAYNNNNRTG	3 cut(s)	698, 1004, 1031
SmlI	CTYRAG	2 cut(s)	167, 1029
SmoI	CTYRAG	2 cut(s)	167, 1029
Sse9I	AATT	4 cut(s)	276, 405, 444, 849
SsiI	CCGC	8 cut(s)	24, 87, 110, 120, 232, 597, 684, 789
SspI	AATATT	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	159, 289
TaqI	TCGA	2 cut(s)	153, 643
TasI	AATT	4 cut(s)	276, 405, 444, 849
TatI	WGTACW	1 cut(s)	921
TauI	GCSGC	3 cut(s)	27, 112, 599
TfiI	GAWTC	1 cut(s)	1069
Tru1I	TTAA	3 cut(s)	327, 779, 995
Tru9I	TTAA	3 cut(s)	327, 779, 995
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	7 cut(s)	70, 106, 308, 479, 575, 653, 818
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	435, 925, 1061
TspGWI	ACGGA	1 cut(s)	770
VpaK11BI	GGWCC	3 cut(s)	181, 260, 930
XceI	RCATGY	2 cut(s)	455, 624
XmiI	GTMKAC	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.