RchiOBHm_Chr5g0031931

Reticulon-4-interacting protein 1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
25671538 .. 25676281
4744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31114

Sequence Viewer

Length: 1104 bp
ATGCGGATACTGAGGTCACATGGCGGCTTCAAAGTCTCAATCTTTGAGTCCCATCACTCCAAGGTTGGGCTGCGCCGCATCGCCACCGCCGCCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCCGAGGTCCTGGAGCTCCGGCCCATTGTCGACGTTCCTGATCTCAAGCCCAGTGAGGTCCTCGTTCGCACTCGCGCCGTCTCAATCAATCCCCTTGATACCAGAATGCGGTCTGGCTATGGTCGTTCAATATTTGGACCTCTGCTTCCTCTAATTCTGGGACGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAGCTTCAGTTAAGGGACTTACTGTAGGACAAGAAGTTTTTGGTGCATTGCATCCGACTGCTGTGAGGGGTACTTATACTGATTATGCAATTCTTTCAGAAGATGAACTTGCACCAAAACCAGCGTCAATTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCGTTGACTGCTTGGCGTGCTCTAAAAGGTACTGCAAGGATATCTGAGGGGCAAAGGCTCTTAGTGGTGGGAGGTGGAGGAGCTGTAGGTTTTGCTGCAGTCCAGCTTGCAGTAGCCGCAAGGTGCCATGTTACTACCACATGTGGAAGCCAAAGTTTAGATCGAGTTTTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACCGCTGAGGACATTGAAATGACAATAAAGGGGAAGTTTGATGCTGTCTTGGACACCATTGGTGGGCCAGAGACGGAAAGAATAAGCATAAGTTTTTTAAAGAAAGGCGGGCACTATATGACACTTCAGGGTGAGGCAGCATCCTTGACTGATAGATATGGGATAGCAATTGGGCTTCCAGTTGCTACTGCTGTTTTACTGAAGAAACAGATCCAGTACCGGTCTTCTCATGGAATAGAGTACTGGTGGACCTTCATGAGAGCAGACTCAGAAGGGTTACATGAGATCCGAAGGCTATCTGAAGCTGGAAAGTTAAACATACCTGTGGAGAAAACATTTCCCATCACTCAAGTGAGAGAGGCTCATGAGGCAAAGGAGAAGAAGCAGATTCATGGTAAAGTAGTGCTCAAACTTGACTGA

Protein Analysis

367

Amino Acids

39.5

Weight (kDa)

9.25

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 58 - 147 8e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 189 - 287 4.5e-12 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 221 - 364 1.1e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012404)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 606
AccI GTMKAC 1 cut(s) 156
AccII CGCG 2 cut(s) 115, 201
AclWI GGATC 2 cut(s) 889, 964
AcuI CTGAAG 4 cut(s) 309, 794, 905, 1005
AfaI GTAC 4 cut(s) 391, 514, 902, 926
AfiI CCNNNNNNNGG 4 cut(s) 66, 119, 234, 747
AflIII ACRYGT 2 cut(s) 454, 623
AgeI ACCGGT 1 cut(s) 903
AgsI TTSAA 3 cut(s) 31, 255, 701
AjiI CACGTC 1 cut(s) 290
AjnI CCWGG 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 1034
AluBI AGCT 7 cut(s) 142, 314, 323, 566, 589, 659, 989
AluI AGCT 7 cut(s) 142, 314, 323, 566, 589, 659, 989
Alw21I GWGCWC 3 cut(s) 144, 505, 1092
Alw26I GTCTC 3 cut(s) 40, 211, 749
AlwI GGATC 2 cut(s) 889, 964
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 3 cut(s) 125, 146, 749
ApaI GGGCCC 1 cut(s) 129
ApeKI GCWGC 7 cut(s) 70, 109, 311, 482, 578, 656, 821
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AsiGI ACCGGT 1 cut(s) 903
AspLEI GCGC 3 cut(s) 75, 117, 203
AspS9I GGNCC 8 cut(s) 125, 126, 133, 147, 184, 263, 749, 933
AsuHPI GGTGA 2 cut(s) 314, 827
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 4 cut(s) 133, 184, 263, 933
BaeGI GKGCMC 2 cut(s) 129, 798
BaeI ACNNNNGTAYC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 606
BanII GRGCYC 2 cut(s) 129, 144
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 3 cut(s) 144, 505, 1092
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 7 cut(s) 57, 96, 323, 469, 565, 668, 833
BccI CCATC 2 cut(s) 60, 1034
BceAI ACGGC 2 cut(s) 86, 188
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 40, 211, 749
BfmI CTRYAG 4 cut(s) 94, 342, 567, 579
BlpI GCTNAGC 1 cut(s) 666
BmcAI AGTACT 1 cut(s) 926
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 4 cut(s) 133, 184, 263, 933
BmeT110I CYCGRG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 8 cut(s) 125, 126, 133, 147, 184, 263, 749, 933
BmiI GGNNCC 2 cut(s) 127, 608
BmrFI CCNGG 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 87, 379, 715, 833
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 900
BplI GAGNNNNNCTC 2 cut(s) 1030, 1062
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 690
Bpu1102I GCTNAGC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 155, 1017
BsaJI CCNNGG 3 cut(s) 60, 102, 129
BsaWI WCCGGW 1 cut(s) 903
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 552, 582
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 119, 234, 747
Bse118I RCCGGY 1 cut(s) 903
Bse1I ACTGG 4 cut(s) 177, 863, 898, 932
Bse3DI GCAATG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 60, 102, 129
BseGI GGATG 2 cut(s) 370, 824
BseLI CCNNNNNNNGG 4 cut(s) 66, 119, 234, 747
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 4 cut(s) 519, 657, 681, 966
BseNI ACTGG 4 cut(s) 177, 863, 898, 932
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 2 cut(s) 129, 798
BseXI GCAGC 7 cut(s) 57, 96, 323, 469, 565, 668, 833
Bsh1236I CGCG 2 cut(s) 115, 201
BshFI GGCC 3 cut(s) 127, 148, 751
BshNI GGYRCC 1 cut(s) 606
BshTI ACCGGT 1 cut(s) 903
BsiHKAI GWGCWC 3 cut(s) 144, 505, 1092
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 145, 904
BslFI GGGAC 3 cut(s) 34, 300, 348
BslI CCNNNNNNNGG 4 cut(s) 66, 119, 234, 747
BsmAI GTCTC 3 cut(s) 40, 211, 749
BsmBI CGTCTC 2 cut(s) 211, 749
BsmFI GGGAC 3 cut(s) 34, 300, 348
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 3 cut(s) 127, 148, 751
BsoBI CYCGRG 1 cut(s) 128
Bsp120I GGGCCC 1 cut(s) 125
Bsp1286I GDGCHC 5 cut(s) 129, 144, 505, 798, 1092
Bsp143I GATC 4 cut(s) 166, 643, 894, 969
Bsp1720I GCTNAGC 1 cut(s) 666
BspANI GGCC 3 cut(s) 127, 148, 751
BspCNI CTCAG 4 cut(s) 520, 658, 682, 965
BspFNI CGCG 2 cut(s) 115, 201
BspHI TCATGA 2 cut(s) 939, 1048
BspLI GGNNCC 2 cut(s) 127, 608
BspMAI CTGCAG 2 cut(s) 98, 583
BspPI GGATC 2 cut(s) 889, 964
BspT107I GGYRCC 1 cut(s) 606
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 903
BsrI ACTGG 4 cut(s) 177, 863, 898, 932
BssAI RCCGGY 1 cut(s) 903
BssECI CCNNGG 3 cut(s) 60, 102, 129
BssMI GATC 4 cut(s) 166, 643, 894, 969
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 343
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 6 cut(s) 94, 125, 501, 591, 672, 794
BstDEI CTNAG 6 cut(s) 11, 528, 544, 666, 690, 952
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 370, 824
BstFNI CGCG 2 cut(s) 115, 201
BstHHI GCGC 3 cut(s) 75, 117, 203
BstKTI GATC 4 cut(s) 169, 646, 897, 972
BstMAI GTCTC 3 cut(s) 40, 211, 749
BstMBI GATC 4 cut(s) 166, 643, 894, 969
BstMWI GCNNNNNNNGC 9 cut(s) 89, 98, 320, 491, 500, 599, 662, 671, 1052
BstNI CCWGG 1 cut(s) 137
BstNSI RCATGY 2 cut(s) 458, 627
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 4 cut(s) 94, 342, 567, 579
BstSLI GKGCMC 2 cut(s) 129, 798
BstUI CGCG 2 cut(s) 115, 201
BstV1I GCAGC 7 cut(s) 57, 96, 323, 469, 565, 668, 833
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 2 cut(s) 894, 969
BstYI RGATCY 2 cut(s) 894, 969
BsuRI GGCC 3 cut(s) 127, 148, 751
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 2 cut(s) 370, 824
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 6 cut(s) 94, 125, 501, 591, 672, 794
CciI TCATGA 2 cut(s) 939, 1048
CfoI GCGC 3 cut(s) 75, 117, 203
Cfr10I RCCGGY 1 cut(s) 903
Cfr13I GGNCC 8 cut(s) 125, 126, 133, 147, 184, 263, 749, 933
CseI GACGC 1 cut(s) 432
Csp6I GTAC 4 cut(s) 390, 513, 901, 925
CspAI ACCGGT 1 cut(s) 903
CviAII CATG 9 cut(s) 20, 455, 611, 624, 914, 940, 965, 1049, 1076
CviQI GTAC 4 cut(s) 390, 513, 901, 925
DdeI CTNAG 6 cut(s) 11, 528, 544, 666, 690, 952
DpnI GATC 4 cut(s) 168, 645, 896, 971
DpnII GATC 4 cut(s) 166, 643, 894, 969
DraI TTTAAA 1 cut(s) 783
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 129, 144
Eco32I GATATC 1 cut(s) 525
Eco47I GGWCC 4 cut(s) 133, 184, 263, 933
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 4 cut(s) 309, 794, 905, 1005
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 2 cut(s) 133, 184
EcoRII CCWGG 1 cut(s) 135
EcoRV GATATC 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 129, 144
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 211, 749
FaeI CATG 9 cut(s) 23, 458, 614, 627, 917, 943, 968, 1052, 1079
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 3 cut(s) 34, 300, 348
FatI CATG 9 cut(s) 19, 454, 610, 623, 913, 939, 964, 1048, 1075
FauI CCCGC 2 cut(s) 116, 785
FblI GTMKAC 1 cut(s) 156
FokI GGATG 2 cut(s) 357, 811
FriOI GRGCYC 2 cut(s) 129, 144
GlaI GCGC 3 cut(s) 74, 116, 202
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 3 cut(s) 127, 148, 751
HapII CCGG 2 cut(s) 145, 904
HgaI GACGC 1 cut(s) 432
HhaI GCGC 3 cut(s) 75, 117, 203
Hin1II CATG 9 cut(s) 23, 458, 614, 627, 917, 943, 968, 1052, 1079
Hin6I GCGC 3 cut(s) 73, 115, 201
HinP1I GCGC 3 cut(s) 73, 115, 201
HincII GTYRAC 3 cut(s) 157, 489, 679
HindII GTYRAC 3 cut(s) 157, 489, 679
HinfI GANTC 3 cut(s) 47, 950, 1072
HpaII CCGG 2 cut(s) 145, 904
HphI GGTGA 2 cut(s) 314, 827
Hpy166II GTNNAC 4 cut(s) 157, 489, 679, 933
Hpy188I TCNGA 6 cut(s) 375, 418, 529, 955, 974, 985
Hpy188III TCNNGA 3 cut(s) 164, 940, 1049
Hpy8I GTNNAC 4 cut(s) 157, 489, 679, 933
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 946, 950, 969
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 159, 289
HpyCH4V TGCA 9 cut(s) 96, 311, 365, 370, 407, 431, 518, 581, 593
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 98, 320, 491, 500, 599, 662, 671, 1052
HpyF3I CTNAG 6 cut(s) 11, 528, 544, 666, 690, 952
HpySE526I ACGT 2 cut(s) 159, 289
Hsp92II CATG 9 cut(s) 23, 458, 614, 627, 917, 943, 968, 1052, 1079
HspAI GCGC 3 cut(s) 73, 115, 201
Kzo9I GATC 4 cut(s) 166, 643, 894, 969
LmnI GCTCC 4 cut(s) 139, 147, 320, 563
Lsp1109I GCAGC 7 cut(s) 57, 96, 323, 469, 565, 668, 833
LweI GCATC 4 cut(s) 87, 379, 715, 833
MaeII ACGT 2 cut(s) 159, 289
MaeIII GTNAC 3 cut(s) 15, 613, 960
MalI GATC 4 cut(s) 168, 645, 896, 971
MboI GATC 4 cut(s) 166, 643, 894, 969
MboII GAAGA 4 cut(s) 431, 898, 900, 1075
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 2 cut(s) 894, 969
MhlI GDGCHC 5 cut(s) 129, 144, 505, 798, 1092
MluCI AATT 4 cut(s) 279, 408, 447, 852
MlyI GAGTC 2 cut(s) 56, 944
MmeI TCCRAC 1 cut(s) 398
MseI TTAA 3 cut(s) 330, 782, 998
MslI CAYNNNNRTG 3 cut(s) 701, 1007, 1034
MspA1I CMGCKG 3 cut(s) 314, 659, 689
MspI CCGG 2 cut(s) 145, 904
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 2 cut(s) 115, 201
MwoI GCNNNNNNNGC 9 cut(s) 89, 98, 320, 491, 500, 599, 662, 671, 1052
NdeII GATC 4 cut(s) 166, 643, 894, 969
NlaIII CATG 9 cut(s) 23, 458, 614, 627, 917, 943, 968, 1052, 1079
NlaIV GGNNCC 2 cut(s) 127, 608
NmuCI GTSAC 1 cut(s) 15
NspI RCATGY 2 cut(s) 458, 627
OliI CACNNNNGTG 1 cut(s) 1034
PagI TCATGA 2 cut(s) 939, 1048
PciI ACATGT 2 cut(s) 454, 623
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 1072
PfoI TCCNGGA 1 cut(s) 135
PinAI ACCGGT 1 cut(s) 903
PleI GAGTC 2 cut(s) 55, 944
PpsI GAGTC 2 cut(s) 55, 944
PpuMI RGGWCCY 2 cut(s) 133, 184
PscI ACATGT 2 cut(s) 454, 623
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 2 cut(s) 133, 184
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 127, 608
PspOMI GGGCCC 1 cut(s) 125
PspPI GGNCC 8 cut(s) 125, 126, 133, 147, 184, 263, 749, 933
PspPPI RGGWCCY 2 cut(s) 133, 184
PstI CTGCAG 2 cut(s) 98, 583
PsuI RGATCY 2 cut(s) 894, 969
PvuII CAGCTG 2 cut(s) 314, 659
RsaI GTAC 4 cut(s) 391, 514, 902, 926
RsaNI GTAC 4 cut(s) 390, 513, 901, 925
RseI CAYNNNNRTG 3 cut(s) 701, 1007, 1034
SacI GAGCTC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 330, 782, 998
Sau3AI GATC 4 cut(s) 166, 643, 894, 969
Sau96I GGNCC 8 cut(s) 125, 126, 133, 147, 184, 263, 749, 933
ScaI AGTACT 1 cut(s) 926
SchI GAGTC 2 cut(s) 56, 944
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 5 cut(s) 129, 144, 505, 798, 1092
SfaNI GCATC 4 cut(s) 87, 379, 715, 833
SfcI CTRYAG 4 cut(s) 94, 342, 567, 579
SinI GGWCC 4 cut(s) 133, 184, 263, 933
SmiMI CAYNNNNRTG 3 cut(s) 701, 1007, 1034
SmlI CTYRAG 2 cut(s) 170, 1032
SmoI CTYRAG 2 cut(s) 170, 1032
Sse9I AATT 4 cut(s) 279, 408, 447, 852
SspI AATATT 1 cut(s) 258
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 162, 292
TaqI TCGA 2 cut(s) 156, 646
TasI AATT 4 cut(s) 279, 408, 447, 852
TatI WGTACW 1 cut(s) 924
TauI GCSGC 5 cut(s) 27, 78, 92, 115, 602
TfiI GAWTC 1 cut(s) 1072
Tru1I TTAA 3 cut(s) 330, 782, 998
Tru9I TTAA 3 cut(s) 330, 782, 998
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 7 cut(s) 70, 109, 311, 482, 578, 656, 821
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 438, 928, 1064
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 4 cut(s) 133, 184, 263, 933
XceI RCATGY 2 cut(s) 458, 627
XmiI GTMKAC 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.