Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Forward (+)

10244401 .. 10248286

Gene Structure 3886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCGAATTCTGAGGTCACGGAGCTTCAGAGCCTCAGTCTCCGACTCCAATTACCACTTCAATGTAGGGTTCAGGCGCTTCGTCACCAGCTGTAGAGCCGTGGTGTTGCCGCGCTTTGGTGGGCCTGAGGTTCTGGAGCTCCGGCCCAATGTCAGTGTCCCTGATCTCAAGCCCCATGAGGTCCTCGTTCGCACTCGTGCCGTCTCCATCAATCCCCTCGATACCAGAATGCGATCTGGCTATGGTCGTTCGATATTTGAACCCCTTCTACCTCTTATTTTGGGTCGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAGATTCAGTTCGGGGATTGAGTATAGGACAAGAAGTTTTTGGTGCATTGCATCCTACTGCTGTCAGGGGTACTTATGCTGACTATGCAATTCTATCAGATGAGGAACTTGCACCAAAACCAGCGTCAGTTACACATGTGGAAGCAAGTGTCATTCCTTTTGCTGCTCTGACTGCTTGGCGTGCTCTCAAAAGTACCGCTAGGATAGCTGAGGGACAAAGGGTGTTAGTGGTGGGTGGTGGAGGAGCTGTAGGTTTGGCTGCAATTCAGATTTCAGTCGCCCAAGGCTGCTATGTTACAACTACCTGTGGAAAGCAAAGTATAGATCGAGTATTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACTGAGGACATTGAATTGGTAATAAAGGGGAAGTTTGATGCTGTTTTGGACACCATTGGTGGGCCAGAAACCGAAAGAATAAGCATAAATTTTTTAAAAAGAGGTGGACACTACATGACACTTCAGGGTGAGGCAGCATCTTTGACTGATAGGTATGGGATAGCTTTTGGGCTTCCAGTTGCTACAGCTGTGTTACTAAAGAAACAGAATCTGTACCGCTGTTCTCATGGAATAGAGTACTGGTGGACTTACATGAGAGCTGACTCAGAAGGGTTATTTGAGATCCGAAAGCTGTCGGAAGCTGGAAAATTGAATATACCAGTGGAGAAAACATTTCCCATCACTCAAGTGATAGAGGCTCATGAGGCAAAGGAGAAGAAGCAGATCCATGGCAAAGTAGTGCTCAAATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

366

Amino Acids

39.79

Weight (kDa)

8.92

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	112
AciI	CCGC	3 cut(s)	110, 513, 898
AclWI	GGATC	2 cut(s)	958, 1060
AcsI	RAATTY	3 cut(s)	6, 769, 1088
AcuI	CTGAAG	2 cut(s)	10, 788
AfaI	GTAC	4 cut(s)	388, 511, 896, 920
AfiI	CCNNNNNNNGG	2 cut(s)	116, 741
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	61, 260, 695, 994
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AleI	CACNNNNGTG	1 cut(s)	1028
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
Alw21I	GWGCWC	3 cut(s)	141, 502, 1086
Alw26I	GTCTC	2 cut(s)	43, 208
AlwI	GGATC	2 cut(s)	958, 1060
AlwNI	CAGNNNCTG	1 cut(s)	892
AoxI	GGCC	3 cut(s)	122, 143, 743
ApeKI	GCWGC	6 cut(s)	308, 479, 575, 603, 653, 815
ApoI	RAATTY	3 cut(s)	6, 769, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	78, 114
AspS9I	GGNCC	4 cut(s)	122, 144, 181, 743
AsuHPI	GGTGA	3 cut(s)	76, 311, 821
AvaII	GGWCC	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	195
Bbv12I	GWGCWC	3 cut(s)	141, 502, 1086
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	6 cut(s)	320, 466, 562, 590, 665, 827
BccI	CCATC	2 cut(s)	215, 1028
BceAI	ACGGC	2 cut(s)	83, 185
BcoDI	GTCTC	2 cut(s)	43, 208
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	3 cut(s)	91, 564, 864
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	7 cut(s)	110, 309, 480, 576, 604, 654, 816
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	7 cut(s)	111, 310, 481, 577, 605, 655, 817
BmcAI	AGTACT	1 cut(s)	920
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	4 cut(s)	122, 144, 181, 743
BmsI	GCATC	3 cut(s)	376, 709, 827
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	152, 1011
BsaJI	CCNNGG	3 cut(s)	99, 598, 1069
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 549, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 741
Bse1I	ACTGG	3 cut(s)	857, 926, 1001
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	99, 598, 1069
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	116, 741
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	6 cut(s)	48, 117, 516, 654, 675, 960
BseNI	ACTGG	3 cut(s)	857, 926, 1001
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	6 cut(s)	320, 466, 562, 590, 665, 827
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	124, 145, 745
BsiHKAI	GWGCWC	3 cut(s)	141, 502, 1086
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	143, 543
BslI	CCNNNNNNNGG	2 cut(s)	116, 741
BsmAI	GTCTC	2 cut(s)	43, 208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	143, 543
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	124, 145, 745
Bsp1286I	GDGCHC	3 cut(s)	141, 502, 1086
Bsp143I	GATC	5 cut(s)	163, 233, 640, 963, 1065
Bsp1720I	GCTNAGC	1 cut(s)	663
Bsp19I	CCATGG	1 cut(s)	1069
BspACI	CCGC	3 cut(s)	110, 513, 898
BspANI	GGCC	3 cut(s)	124, 145, 745
BspCNI	CTCAG	6 cut(s)	47, 118, 517, 655, 676, 959
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	1042
BspPI	GGATC	2 cut(s)	958, 1060
BsrDI	GCAATG	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	857, 926, 1001
BssECI	CCNNGG	3 cut(s)	99, 598, 1069
BssMI	GATC	5 cut(s)	163, 233, 640, 963, 1065
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	598, 1069
Bst2BI	CACGAG	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	498, 669
BstDEI	CTNAG	7 cut(s)	11, 34, 126, 525, 663, 684, 946
BstDSI	CCRYGG	2 cut(s)	99, 1069
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 114
BstKTI	GATC	5 cut(s)	166, 236, 643, 966, 1068
BstMAI	GTCTC	2 cut(s)	43, 208
BstMBI	GATC	5 cut(s)	163, 233, 640, 963, 1065
BstMWI	GCNNNNNNNGC	7 cut(s)	401, 488, 497, 521, 659, 668, 1046
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	3 cut(s)	91, 564, 864
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	6 cut(s)	320, 466, 562, 590, 665, 827
BstX2I	RGATCY	2 cut(s)	963, 1065
BstYI	RGATCY	2 cut(s)	963, 1065
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	124, 145, 745
BtgI	CCRYGG	2 cut(s)	99, 1069
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	160, 1008
Cac8I	GCNNGC	2 cut(s)	498, 669
CaiI	CAGNNNCTG	1 cut(s)	892
CciI	TCATGA	1 cut(s)	1042
CfoI	GCGC	2 cut(s)	78, 114
Cfr13I	GGNCC	4 cut(s)	122, 144, 181, 743
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	4 cut(s)	387, 510, 895, 919
CviAII	CATG	7 cut(s)	176, 452, 796, 908, 934, 1043, 1070
CviQI	GTAC	4 cut(s)	387, 510, 895, 919
DdeI	CTNAG	7 cut(s)	11, 34, 126, 525, 663, 684, 946
DpnI	GATC	5 cut(s)	165, 235, 642, 965, 1067
DpnII	GATC	5 cut(s)	163, 233, 640, 963, 1065
DraI	TTTAAA	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	598, 1069
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	10, 788
Eco81I	CCTNAGG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	598, 1069
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	598, 1069
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	7 cut(s)	179, 455, 799, 911, 937, 1046, 1073
FaqI	GGGAC	2 cut(s)	143, 543
FatI	CATG	7 cut(s)	175, 451, 795, 907, 933, 1042, 1069
Fnu4HI	GCNGC	7 cut(s)	110, 309, 480, 576, 604, 654, 816
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	7 cut(s)	110, 309, 480, 576, 604, 654, 816
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	2 cut(s)	77, 113
GluI	GCNGC	7 cut(s)	110, 309, 480, 576, 604, 654, 816
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	124, 145, 745
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	2 cut(s)	78, 114
Hin1II	CATG	7 cut(s)	179, 455, 799, 911, 937, 1046, 1073
Hin6I	GCGC	2 cut(s)	76, 112
HinP1I	GCGC	2 cut(s)	76, 112
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	4 cut(s)	44, 320, 889, 944
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	3 cut(s)	76, 311, 821
Hpy166II	GTNNAC	3 cut(s)	676, 788, 927
Hpy188I	TCNGA	9 cut(s)	12, 29, 43, 415, 486, 585, 949, 968, 979
Hpy188III	TCNNGA	3 cut(s)	134, 287, 1043
Hpy8I	GTNNAC	3 cut(s)	676, 788, 927
HpyAV	CCTTC	2 cut(s)	275, 944
HpyCH4V	TGCA	6 cut(s)	308, 362, 367, 404, 428, 578
HpyF10VI	GCNNNNNNNGC	7 cut(s)	401, 488, 497, 521, 659, 668, 1046
HpyF3I	CTNAG	7 cut(s)	11, 34, 126, 525, 663, 684, 946
Hsp92II	CATG	7 cut(s)	179, 455, 799, 911, 937, 1046, 1073
HspAI	GCGC	2 cut(s)	76, 112
Kzo9I	GATC	5 cut(s)	163, 233, 640, 963, 1065
LmnI	GCTCC	4 cut(s)	21, 136, 144, 560
Lsp1109I	GCAGC	6 cut(s)	320, 466, 562, 590, 665, 827
LweI	GCATC	3 cut(s)	376, 709, 827
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	5 cut(s)	15, 82, 445, 610, 873
MalI	GATC	5 cut(s)	165, 235, 642, 965, 1067
MboI	GATC	5 cut(s)	163, 233, 640, 963, 1065
MboII	GAAGA	1 cut(s)	1069
MflI	RGATCY	2 cut(s)	963, 1065
MhlI	GDGCHC	3 cut(s)	141, 502, 1086
MluCI	AATT	8 cut(s)	6, 49, 405, 579, 695, 769, 989, 1088
MlyI	GAGTC	2 cut(s)	38, 938
MmeI	TCCRAC	2 cut(s)	66, 957
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	776
MslI	CAYNNNNRTG	2 cut(s)	60, 1028
MspA1I	CMGCKG	5 cut(s)	90, 311, 656, 869, 900
MspI	CCGG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	234
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	7 cut(s)	401, 488, 497, 521, 659, 668, 1046
NcoI	CCATGG	1 cut(s)	1069
NdeII	GATC	5 cut(s)	163, 233, 640, 963, 1065
NlaIII	CATG	7 cut(s)	179, 455, 799, 911, 937, 1046, 1073
NmuCI	GTSAC	2 cut(s)	15, 82
NspI	RCATGY	1 cut(s)	455
OliI	CACNNNNGTG	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	1042
PciI	ACATGT	1 cut(s)	451
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	320, 889
PkrI	GCNGC	7 cut(s)	111, 310, 481, 577, 605, 655, 817
PleI	GAGTC	2 cut(s)	38, 938
PpsI	GAGTC	2 cut(s)	38, 938
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	181
PspPI	GGNCC	4 cut(s)	122, 144, 181, 743
PspPPI	RGGWCCY	1 cut(s)	181
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	2 cut(s)	963, 1065
PvuII	CAGCTG	4 cut(s)	90, 311, 656, 869
RsaI	GTAC	4 cut(s)	388, 511, 896, 920
RsaNI	GTAC	4 cut(s)	387, 510, 895, 919
RseI	CAYNNNNRTG	2 cut(s)	60, 1028
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	7 cut(s)	110, 309, 480, 576, 604, 654, 816
Sau3AI	GATC	5 cut(s)	163, 233, 640, 963, 1065
Sau96I	GGNCC	4 cut(s)	122, 144, 181, 743
ScaI	AGTACT	1 cut(s)	920
SchI	GAGTC	2 cut(s)	38, 938
SduI	GDGCHC	3 cut(s)	141, 502, 1086
SfaNI	GCATC	3 cut(s)	376, 709, 827
SfcI	CTRYAG	3 cut(s)	91, 564, 864
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	60, 1028
SmlI	CTYRAG	2 cut(s)	167, 1026
SmoI	CTYRAG	2 cut(s)	167, 1026
Sse9I	AATT	8 cut(s)	6, 49, 405, 579, 695, 769, 989, 1088
SsiI	CCGC	3 cut(s)	110, 513, 898
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	598, 1069
TaqI	TCGA	3 cut(s)	219, 251, 643
TasI	AATT	8 cut(s)	6, 49, 405, 579, 695, 769, 989, 1088
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	320, 889
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	2 cut(s)	160, 1008
TseFI	GTSAC	2 cut(s)	15, 82
TseI	GCWGC	6 cut(s)	308, 479, 575, 603, 653, 815
Tsp45I	GTSAC	2 cut(s)	15, 82
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	160, 1008
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	3 cut(s)	6, 769, 1088
XceI	RCATGY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.