Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Reverse (-)

25684398 .. 25687952

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g22720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCGAATTCTTAAGTCGCGCAGCTTCAGAGCCACACTCTCTGGCTCCAATCACCCCCTCAAGGTAGGGTTCCGGCGCTTCGTCACCAGCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCGGAGGTTCTGGAGCTCCGGCCCAATGTCGAAGTCCCTGATCTCAAGCCCCATGAGGTCCTCGTCCGCGCTCGTGCCGCCTCCATCAATCCCCTCGATACCAGAATTCGATCTGGCTATGGTCGTTCCTTATATGGACCTCTACTACCTATTATTTTGGGTCGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAAATTCAGTTCGAGGATTGAGTGTGGGACTAGAAGTTTTTGGTGCATTGCATCCTACTGCTGTAAGGGGTACATATTCTGACTATGCAATTTTATCAGAAGAGGAACTTGCACCAAAACCAGCGTCAGTTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCTCTGACTGCTTGGCGTGCTCTCATAAGTACTGCTAGGATAGCTGACGGTCAAAGGCTGTTAGTTGTGGGTGGTGGAGGAGCTGTAGGTTTGGCTGCAATTCAGATTTCAATAGGCAGAGGTTGCCATGTTACAACTACCTGCGGAAAGAAAAGTATAGATCGAGTATTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACTGCTGAGGGTGACGCAGCATCTTTGAGTGATAGGTATGGGATAGCTATTGGGCTTCCTGTTGCTACAGCTGTTTTACTGAAGAAACAGATTCAGTACCGGTATTCTCACGGAATAGAGTACTGGTGGACTTATATGAGAGCCGACTCAGAAGGGTTAGATGAGATCCGAAGGCTGTCTGAAGCGGGAAAGTTGAATATACCAGTGGAGAAAACGTTCCCCATTACTCAAGTGATAGAGGCTCACGAGGCAAAGGAGAAGAAGCAGATCCACGGGAAAATAGTGCTCGAATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

327

Amino Acids

35.16

Weight (kDa)

9.3

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	629
AccII	CGCG	3 cut(s)	19, 112, 192
AciI	CCGC	6 cut(s)	110, 120, 190, 201, 624, 866
AclI	AACGTT	1 cut(s)	896
AclWI	GGATC	2 cut(s)	841, 943
AcsI	RAATTY	4 cut(s)	6, 228, 319, 971
AcuI	CTGAAG	3 cut(s)	10, 782, 882
AfaI	GTAC	4 cut(s)	388, 511, 779, 803
AfiI	CCNNNNNNNGG	2 cut(s)	61, 116
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	451
AgeI	ACCGGT	1 cut(s)	780
AgsI	TTSAA	2 cut(s)	591, 877
AloI	GAACNNNNNNTCC	4 cut(s)	309, 341, 881, 913
AluBI	AGCT	9 cut(s)	24, 90, 139, 311, 524, 563, 656, 728, 752
AluI	AGCT	9 cut(s)	24, 90, 139, 311, 524, 563, 656, 728, 752
Alw21I	GWGCWC	3 cut(s)	141, 502, 969
AlwI	GGATC	2 cut(s)	841, 943
AoxI	GGCC	2 cut(s)	122, 143
ApeKI	GCWGC	8 cut(s)	21, 90, 106, 308, 479, 575, 653, 698
ApoI	RAATTY	4 cut(s)	6, 228, 319, 971
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	780
Asp700I	GAANNNNTTC	1 cut(s)	896
AspLEI	GCGC	4 cut(s)	21, 78, 114, 194
AspS9I	GGNCC	4 cut(s)	122, 144, 181, 260
AsuHPI	GGTGA	4 cut(s)	44, 76, 311, 704
AvaII	GGWCC	2 cut(s)	181, 260
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	2 cut(s)	195, 926
Bbv12I	GWGCWC	3 cut(s)	141, 502, 969
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	347, 516
BfmI	CTRYAG	3 cut(s)	91, 564, 747
BfoI	RGCGCY	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	629
BlpI	GCTNAGC	1 cut(s)	663
BmcAI	AGTACT	2 cut(s)	511, 803
Bme18I	GGWCC	2 cut(s)	181, 260
BmgT120I	GGNCC	4 cut(s)	122, 144, 181, 260
BmiI	GGNNCC	2 cut(s)	46, 71
BmsI	GCATC	2 cut(s)	376, 710
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	3 cut(s)	44, 152, 894
BsaJI	CCNNGG	2 cut(s)	99, 952
BsaWI	WCCGGW	1 cut(s)	780
BsaXI	ACNNNNNCTCC	4 cut(s)	549, 579, 881, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 116
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	2 cut(s)	809, 884
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	99, 952
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	61, 116
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	3 cut(s)	654, 678, 843
BseNI	ACTGG	2 cut(s)	809, 884
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
Bsh1236I	CGCG	3 cut(s)	19, 112, 192
BshFI	GGCC	2 cut(s)	124, 145
BshTI	ACCGGT	1 cut(s)	780
BsiHKAI	GWGCWC	3 cut(s)	141, 502, 969
BsiSI	CCGG	4 cut(s)	73, 125, 142, 781
BslFI	GGGAC	2 cut(s)	143, 357
BslI	CCNNNNNNNGG	2 cut(s)	61, 116
BsmFI	GGGAC	2 cut(s)	143, 357
BsnI	GGCC	2 cut(s)	124, 145
Bsp1286I	GDGCHC	3 cut(s)	141, 502, 969
Bsp143I	GATC	5 cut(s)	163, 233, 640, 846, 948
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	6 cut(s)	110, 120, 190, 201, 624, 866
BspANI	GGCC	2 cut(s)	124, 145
BspCNI	CTCAG	3 cut(s)	655, 679, 842
BspFNI	CGCG	3 cut(s)	19, 112, 192
BspLI	GGNNCC	2 cut(s)	46, 71
BspMAI	CTGCAG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	841, 943
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	809, 884
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	2 cut(s)	99, 952
BssMI	GATC	5 cut(s)	163, 233, 640, 846, 948
BssSI	CACGAG	2 cut(s)	195, 926
Bst2BI	CACGAG	2 cut(s)	195, 926
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	603, 659
BstC8I	GCNNGC	3 cut(s)	122, 498, 669
BstDEI	CTNAG	3 cut(s)	663, 687, 829
BstDSI	CCRYGG	2 cut(s)	99, 952
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	3 cut(s)	19, 112, 192
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	4 cut(s)	21, 78, 114, 194
BstKTI	GATC	5 cut(s)	166, 236, 643, 849, 951
BstMBI	GATC	5 cut(s)	163, 233, 640, 846, 948
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 603, 659, 668, 929
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	3 cut(s)	91, 564, 747
BstUI	CGCG	3 cut(s)	19, 112, 192
BstV1I	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
BstX2I	RGATCY	2 cut(s)	846, 948
BstYI	RGATCY	2 cut(s)	846, 948
BsuRI	GGCC	2 cut(s)	124, 145
BtgI	CCRYGG	2 cut(s)	99, 952
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	891
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	3 cut(s)	122, 498, 669
CfoI	GCGC	4 cut(s)	21, 78, 114, 194
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	4 cut(s)	122, 144, 181, 260
CseI	GACGC	2 cut(s)	429, 704
Csp6I	GTAC	4 cut(s)	387, 510, 778, 802
CspAI	ACCGGT	1 cut(s)	780
CviAII	CATG	3 cut(s)	176, 452, 608
CviQI	GTAC	4 cut(s)	387, 510, 778, 802
DdeI	CTNAG	3 cut(s)	663, 687, 829
DpnI	GATC	5 cut(s)	165, 235, 642, 848, 950
DpnII	GATC	5 cut(s)	163, 233, 640, 846, 948
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	181, 260
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	10, 782, 882
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	2 cut(s)	6, 228
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	3 cut(s)	179, 455, 611
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	2 cut(s)	143, 357
FatI	CATG	3 cut(s)	175, 451, 607
FauI	CCCGC	2 cut(s)	113, 859
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	347, 516
GlaI	GCGC	4 cut(s)	20, 77, 113, 193
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	124, 145
HapII	CCGG	4 cut(s)	73, 125, 142, 781
HgaI	GACGC	2 cut(s)	429, 704
HhaI	GCGC	4 cut(s)	21, 78, 114, 194
Hin1II	CATG	3 cut(s)	179, 455, 611
Hin6I	GCGC	4 cut(s)	19, 76, 112, 192
HinP1I	GCGC	4 cut(s)	19, 76, 112, 192
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	2 cut(s)	772, 827
HpaII	CCGG	4 cut(s)	73, 125, 142, 781
HphI	GGTGA	4 cut(s)	44, 76, 311, 704
Hpy166II	GTNNAC	2 cut(s)	676, 810
Hpy188I	TCNGA	8 cut(s)	29, 397, 415, 486, 585, 832, 851, 862
Hpy188III	TCNNGA	3 cut(s)	134, 287, 926
Hpy8I	GTNNAC	2 cut(s)	676, 810
HpyAV	CCTTC	2 cut(s)	827, 846
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	7 cut(s)	93, 308, 362, 367, 404, 428, 578
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 603, 659, 668, 929
HpyF3I	CTNAG	3 cut(s)	663, 687, 829
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	3 cut(s)	179, 455, 611
HspAI	GCGC	4 cut(s)	19, 76, 112, 192
Kzo9I	GATC	5 cut(s)	163, 233, 640, 846, 948
LmnI	GCTCC	4 cut(s)	50, 136, 144, 560
Lsp1109I	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
LweI	GCATC	2 cut(s)	376, 710
MaeI	CTAG	2 cut(s)	347, 516
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	4 cut(s)	82, 445, 610, 692
MalI	GATC	5 cut(s)	165, 235, 642, 848, 950
MboI	GATC	5 cut(s)	163, 233, 640, 846, 948
MboII	GAAGA	3 cut(s)	428, 775, 952
MflI	RGATCY	2 cut(s)	846, 948
MhlI	GDGCHC	3 cut(s)	141, 502, 969
MluCI	AATT	6 cut(s)	6, 228, 319, 405, 579, 971
MlyI	GAGTC	1 cut(s)	821
MroXI	GAANNNNTTC	1 cut(s)	896
MseI	TTAA	1 cut(s)	12
MspA1I	CMGCKG	4 cut(s)	90, 311, 656, 752
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	4 cut(s)	73, 125, 142, 781
MvnI	CGCG	3 cut(s)	19, 112, 192
MwoI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 603, 659, 668, 929
NdeII	GATC	5 cut(s)	163, 233, 640, 846, 948
NlaIII	CATG	3 cut(s)	179, 455, 611
NlaIV	GGNNCC	2 cut(s)	46, 71
NmuCI	GTSAC	2 cut(s)	82, 692
NspI	RCATGY	1 cut(s)	455
PciI	ACATGT	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	896
PfeI	GAWTC	1 cut(s)	772
PinAI	ACCGGT	1 cut(s)	780
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	896
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	46, 71
PspPI	GGNCC	4 cut(s)	122, 144, 181, 260
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	846, 948
PvuII	CAGCTG	4 cut(s)	90, 311, 656, 752
RsaI	GTAC	4 cut(s)	388, 511, 779, 803
RsaNI	GTAC	4 cut(s)	387, 510, 778, 802
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	163, 233, 640, 846, 948
Sau96I	GGNCC	4 cut(s)	122, 144, 181, 260
ScaI	AGTACT	2 cut(s)	511, 803
SchI	GAGTC	1 cut(s)	821
SduI	GDGCHC	3 cut(s)	141, 502, 969
SfaNI	GCATC	2 cut(s)	376, 710
SfcI	CTRYAG	3 cut(s)	91, 564, 747
SinI	GGWCC	2 cut(s)	181, 260
SmlI	CTYRAG	4 cut(s)	11, 59, 167, 909
SmoI	CTYRAG	4 cut(s)	11, 59, 167, 909
Sse9I	AATT	6 cut(s)	6, 228, 319, 405, 579, 971
SsiI	CCGC	6 cut(s)	110, 120, 190, 201, 624, 866
SspMI	CTAG	2 cut(s)	347, 516
SstI	GAGCTC	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	6 cut(s)	153, 219, 232, 328, 643, 969
TasI	AATT	6 cut(s)	6, 228, 319, 405, 579, 971
TatI	WGTACW	2 cut(s)	509, 801
TauI	GCSGC	2 cut(s)	112, 203
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	891
TseFI	GTSAC	2 cut(s)	82, 692
TseI	GCWGC	8 cut(s)	21, 90, 106, 308, 479, 575, 653, 698
Tsp45I	GTSAC	2 cut(s)	82, 692
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	891
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	181, 260
XapI	RAATTY	4 cut(s)	6, 228, 319, 971
XceI	RCATGY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	896
XspI	CTAG	2 cut(s)	347, 516
ZrmI	AGTACT	2 cut(s)	511, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.