FvH4_3g20850

Methionine gamma-lyase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
13911367 .. 13916270
4904 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20850.t3

Sequence Viewer

Length: 1368 bp
ATGTGGGGCTTATCCTGCGCCACCTCTGCGGCTTATCCTGCGCTGCCTTCTAGAGCTTGTGAACCCACGGCCACTACTCGTTCCTGTTCTCCAGTCTCCGTCTCATTCCCTACCAATCACCATTATTCTCAGAAAGACAGTCCTTTTGTTCCAGCCGTTGTGGAAGCAGTGGAATCCTTGCATTCAGAGTTCAGAGCTGTGGATAATTTGGTAGCACGCAATACCACTCGGGTTCTTAAAGCTTTCCAGAATGCACGAGTTGGATCTCATCACTTTGCTGGAAGTACTGGCTATGGTCACGATGAAGCTGGGGGGCGTGAAGCTCTTGACCAAGCTTTTGCAGAAATTTTAGGCGCTGAATCTGCAATAGTTCGCTCACAGTTTTTCTCAGGAACTCATGCTATAACCTGTGCTCTGTTTGCTTTTCTAAGGCCAGGAGATGAGCTTTTGGCAGTTGCCGGTCCTCCCTATGACACCTTGGAGGAGGTTATTGGAAAGAGAGACTCTCATGGCATGGGATCCTTGATAGACTTTGGAGTGAAATACCGTGAAGTTCCACTTGCTGAAGATGGTGGCCTTGACTGGGATGCGCTTATGCATGCTTTGAAACCTGAAACAAAATGTGCACTCATACAGCGGTCATGTGGTTATTCATGGCGTCAGAGTTTAAGTGTGGATGACATAAGGCGAGCAATTGAGATAATAAAGATGCAGAATCCTAACTGCCTGGTCATGGTGGATAACTGTTATGGTGAATTTGTGGAAAGCATTGAACCTCCAATGGTGGGTGCAGATTTAATTGCTGGCAGTTTGATAAAAAATCCTGGTGGAACTATAGCCCCATGTGGTGGATATGTTGCAGGAAGGGCAAGATGGGTAAAAGCAGCAGCAGCTCGTCTGTCTGCACCTGGCCTTGGAGTTGATTGTGGCTCAACTCCTGGTCACATTATGAGAGCTCTTTTCCAAGGTTTGTTCCTTTCACCTCAAATGGTCGGCGAGGCTATCAAGGGGACTTTCCTAGTAGCTGAAGTAATGGCTTCCAGGGGGTATAAGGTGCAGCCACTTCCTCGTGTTCCTCGCCATGACACAGTGCAGGCCGTACAGCTTGGAAACCGTGAGCGCCTTCTTGCTTTCTGTGAGGCTGTGCAGAGGAGCTCCCCAGTCGGTTCGTTCACTAAACCAATTGCGGGTACAACTCCTGGATATGCATCCGAGGTGATATTTGCTGATGGAACCTTTGTTCATGGGAGTACAAGTGAGCTTTCATGCGATGGACCATTAAGAGAGCCATTCGCTGTATTTTGCCAGGGTGGCTCCCATTGGACTCAGTGGGGACTAGTTCTTGGGGAGGTTTTACAAGCCATATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

48.66

Weight (kDa)

6.02

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Met_gamma_lyase PF06838 55 - 406 8.1e-144 Methionine gamma-lyase
Cys_Met_Meta_PP PF01053 59 - 298 5.4e-09 Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2 PF00155 102 - 312 5e-06 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015573)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 848
AciI CCGC 3 cut(s) 29, 637, 1187
AclWI GGATC 3 cut(s) 271, 513, 526
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 345, 755
AcuI CTGAAG 2 cut(s) 585, 1047
AcyI GRCGYC 1 cut(s) 658
AfaI GTAC 4 cut(s) 286, 1101, 1192, 1252
AfiI CCNNNNNNNGG 6 cut(s) 583, 733, 785, 848, 914, 1187
AgsI TTSAA 2 cut(s) 607, 773
AhlI ACTAGT 1 cut(s) 1336
AjnI CCWGG 8 cut(s) 433, 726, 823, 907, 937, 1040, 1198, 1305
AloI GAACNNNNNNTCC 2 cut(s) 1224, 1256
Alw21I GWGCWC 4 cut(s) 415, 628, 958, 1157
Alw26I GTCTC 3 cut(s) 100, 106, 495
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 3 cut(s) 271, 513, 526
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 5 cut(s) 69, 431, 574, 910, 1095
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 5 cut(s) 43, 884, 887, 890, 1057
ApoI RAATTY 2 cut(s) 345, 755
ArsI GACNNNNNNTTYG 4 cut(s) 128, 160, 320, 352
AspLEI GCGC 5 cut(s) 20, 43, 356, 592, 1122
AspS9I GGNCC 2 cut(s) 461, 1274
AsuHPI GGTGA 4 cut(s) 110, 764, 972, 1228
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 2 cut(s) 461, 1274
BaeGI GKGCMC 1 cut(s) 628
BamHI GGATCC 1 cut(s) 518
BanII GRGCYC 2 cut(s) 958, 1157
BauI CACGAG 2 cut(s) 255, 1068
Bbv12I GWGCWC 4 cut(s) 415, 628, 958, 1157
BbvI GCAGC 5 cut(s) 30, 896, 899, 902, 1069
BccI CCATC 4 cut(s) 563, 867, 1223, 1265
BceAI ACGGC 3 cut(s) 84, 140, 1082
BciT130I CCWGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
BcoDI GTCTC 3 cut(s) 100, 106, 495
BcuI ACTAGT 1 cut(s) 1336
BfaI CTAG 3 cut(s) 51, 1019, 1337
BfmI CTRYAG 1 cut(s) 834
BfoI RGCGCY 2 cut(s) 357, 1123
BglI GCCNNNNNGGC 1 cut(s) 1311
BisI GCNGC 6 cut(s) 30, 44, 885, 888, 891, 1058
BlsI GCNGC 6 cut(s) 31, 45, 886, 889, 892, 1059
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
Bme18I GGWCC 2 cut(s) 461, 1274
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 461, 1274
BmiI GGNNCC 3 cut(s) 520, 1234, 1315
BmrFI CCNGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
BmrI ACTGGG 2 cut(s) 592, 1154
BmsI GCATC 3 cut(s) 577, 699, 1217
BmuI ACTGGG 2 cut(s) 592, 1154
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpmI CTGGAG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 1207
BsaHI GRCGYC 1 cut(s) 658
BsaJI CCNNGG 7 cut(s) 66, 477, 913, 964, 1041, 1212, 1306
BsaXI ACNNNNNCTCC 2 cut(s) 1240, 1270
Bsc4I CCNNNNNNNGG 6 cut(s) 583, 733, 785, 848, 914, 1187
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 4 cut(s) 92, 292, 587, 1160
Bse8I GATNNNNATC 1 cut(s) 1207
BseBI CCWGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
BseDI CCNNGG 7 cut(s) 66, 477, 913, 964, 1041, 1212, 1306
BseGI GGATG 3 cut(s) 592, 682, 1208
BseJI GATNNNNATC 1 cut(s) 1207
BseLI CCNNNNNNNGG 6 cut(s) 583, 733, 785, 848, 914, 1187
BseMII CTCAG 3 cut(s) 143, 402, 1340
BseNI ACTGG 4 cut(s) 92, 292, 587, 1160
BseRI GAGGAG 2 cut(s) 497, 1165
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 5 cut(s) 30, 896, 899, 902, 1069
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 5 cut(s) 810, 888, 1076, 1112, 1166
BshFI GGCC 5 cut(s) 71, 433, 576, 912, 1097
BsiHKAI GWGCWC 4 cut(s) 415, 628, 958, 1157
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 2 cut(s) 1024, 1347
BslI CCNNNNNNNGG 6 cut(s) 583, 733, 785, 848, 914, 1187
BsmAI GTCTC 3 cut(s) 100, 106, 495
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 1024, 1347
BsmI GAATGC 2 cut(s) 181, 256
BsnI GGCC 5 cut(s) 71, 433, 576, 912, 1097
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 4 cut(s) 415, 628, 958, 1157
Bsp143I GATC 2 cut(s) 263, 518
BspACI CCGC 3 cut(s) 29, 637, 1187
BspANI GGCC 5 cut(s) 71, 433, 576, 912, 1097
BspCNI CTCAG 3 cut(s) 142, 401, 1339
BspLI GGNNCC 3 cut(s) 520, 1234, 1315
BspPI GGATC 3 cut(s) 271, 513, 526
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 4 cut(s) 92, 292, 587, 1160
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 7 cut(s) 66, 477, 913, 964, 1041, 1212, 1306
BssMI GATC 2 cut(s) 263, 518
BssNI GRCGYC 1 cut(s) 658
BssSI CACGAG 2 cut(s) 255, 1068
BssT1I CCWWGG 3 cut(s) 477, 913, 964
Bst2BI CACGAG 2 cut(s) 255, 1068
Bst2UI CCWGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
Bst4CI ACNGT 6 cut(s) 140, 381, 548, 746, 1090, 1115
BstACI GRCGYC 1 cut(s) 658
BstC8I GCNNGC 5 cut(s) 217, 600, 690, 805, 1095
BstDEI CTNAG 4 cut(s) 129, 388, 428, 1326
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 592, 682, 1208
BstH2I RGCGCY 2 cut(s) 357, 1123
BstHHI GCGC 5 cut(s) 20, 43, 356, 592, 1122
BstKTI GATC 2 cut(s) 266, 521
BstMAI GTCTC 3 cut(s) 100, 106, 495
BstMBI GATC 2 cut(s) 263, 518
BstMWI GCNNNNNNNGC 8 cut(s) 15, 26, 38, 362, 419, 866, 890, 1311
BstNI CCWGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 8 cut(s) 433, 726, 823, 907, 937, 1040, 1198, 1305
BstSFI CTRYAG 1 cut(s) 834
BstSLI GKGCMC 1 cut(s) 628
BstV1I GCAGC 5 cut(s) 30, 896, 899, 902, 1069
BstX2I RGATCY 2 cut(s) 263, 518
BstYI RGATCY 2 cut(s) 263, 518
BsuRI GGCC 5 cut(s) 71, 433, 576, 912, 1097
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 1284
BtsCI GGATG 3 cut(s) 592, 682, 1208
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 3 cut(s) 174, 1095, 1334
Cac8I GCNNGC 5 cut(s) 217, 600, 690, 805, 1095
CfoI GCGC 5 cut(s) 20, 43, 356, 592, 1122
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 461, 1274
CseI GACGC 1 cut(s) 647
Csp6I GTAC 4 cut(s) 285, 1100, 1191, 1251
CviQI GTAC 4 cut(s) 285, 1100, 1191, 1251
DdeI CTNAG 4 cut(s) 129, 388, 428, 1326
DpnI GATC 2 cut(s) 265, 520
DpnII GATC 2 cut(s) 263, 518
EaeI YGGCCR 1 cut(s) 69
Ecl136II GAGCTC 2 cut(s) 956, 1155
Eco130I CCWWGG 3 cut(s) 477, 913, 964
Eco24I GRGCYC 2 cut(s) 958, 1157
Eco47I GGWCC 2 cut(s) 461, 1274
Eco53kI GAGCTC 2 cut(s) 956, 1155
Eco57I CTGAAG 2 cut(s) 585, 1047
Eco88I CYCGRG 1 cut(s) 228
EcoICRI GAGCTC 2 cut(s) 956, 1155
EcoRII CCWGG 8 cut(s) 433, 726, 823, 907, 937, 1040, 1198, 1305
EcoT14I CCWWGG 3 cut(s) 477, 913, 964
EcoT22I ATGCAT 2 cut(s) 600, 1210
EcoT38I GRGCYC 2 cut(s) 958, 1157
ErhI CCWWGG 3 cut(s) 477, 913, 964
Esp3I CGTCTC 1 cut(s) 106
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 2 cut(s) 1024, 1347
FauI CCCGC 1 cut(s) 1180
Fnu4HI GCNGC 6 cut(s) 30, 44, 885, 888, 891, 1058
FokI GGATG 3 cut(s) 599, 689, 1195
FriOI GRGCYC 2 cut(s) 958, 1157
Fsp4HI GCNGC 6 cut(s) 30, 44, 885, 888, 891, 1058
FspBI CTAG 3 cut(s) 51, 1019, 1337
GlaI GCGC 5 cut(s) 19, 42, 355, 591, 1121
GluI GCNGC 6 cut(s) 30, 44, 885, 888, 891, 1058
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 2 cut(s) 357, 1123
HaeIII GGCC 5 cut(s) 71, 433, 576, 912, 1097
HapII CCGG 1 cut(s) 459
HgaI GACGC 1 cut(s) 647
HhaI GCGC 5 cut(s) 20, 43, 356, 592, 1122
Hin1I GRCGYC 1 cut(s) 658
Hin6I GCGC 5 cut(s) 18, 41, 354, 590, 1120
HinP1I GCGC 5 cut(s) 18, 41, 354, 590, 1120
HindIII AAGCTT 2 cut(s) 240, 333
HinfI GANTC 5 cut(s) 173, 359, 503, 715, 1324
HpaII CCGG 1 cut(s) 459
HphI GGTGA 4 cut(s) 110, 764, 972, 1228
Hpy166II GTNNAC 3 cut(s) 62, 626, 1173
Hpy188I TCNGA 5 cut(s) 132, 187, 194, 663, 1213
Hpy188III TCNNGA 5 cut(s) 51, 247, 299, 326, 390
Hpy8I GTNNAC 3 cut(s) 62, 626, 1173
HpyAV CCTTC 3 cut(s) 57, 858, 1133
HpyCH4III ACNGT 6 cut(s) 140, 381, 548, 746, 1090, 1115
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 26, 38, 362, 419, 866, 890, 1311
HpyF3I CTNAG 4 cut(s) 129, 388, 428, 1326
Hsp92I GRCGYC 1 cut(s) 658
HspAI GCGC 5 cut(s) 18, 41, 354, 590, 1120
Kzo9I GATC 2 cut(s) 263, 518
LmnI GCTCC 3 cut(s) 1152, 1160, 1319
Lsp1109I GCAGC 5 cut(s) 30, 896, 899, 902, 1069
LweI GCATC 3 cut(s) 577, 699, 1217
MaeI CTAG 3 cut(s) 51, 1019, 1337
MaeIII GTNAC 2 cut(s) 296, 941
MalI GATC 2 cut(s) 265, 520
MboI GATC 2 cut(s) 263, 518
MboII GAAGA 1 cut(s) 578
MfeI CAATTG 2 cut(s) 693, 1182
MflI RGATCY 2 cut(s) 263, 518
MhlI GDGCHC 4 cut(s) 415, 628, 958, 1157
MluCI AATT 6 cut(s) 205, 345, 693, 755, 798, 1182
MlyI GAGTC 2 cut(s) 497, 1318
MmeI TCCRAC 1 cut(s) 241
Mph1103I ATGCAT 2 cut(s) 600, 1210
MseI TTAA 4 cut(s) 237, 668, 797, 1280
MspA1I CMGCKG 1 cut(s) 637
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
MunI CAATTG 2 cut(s) 693, 1182
Mva1269I GAATGC 2 cut(s) 181, 256
MvaI CCWGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
MwoI GCNNNNNNNGC 8 cut(s) 15, 26, 38, 362, 419, 866, 890, 1311
NdeII GATC 2 cut(s) 263, 518
NlaIV GGNNCC 3 cut(s) 520, 1234, 1315
NmuCI GTSAC 2 cut(s) 296, 941
NsiI ATGCAT 2 cut(s) 600, 1210
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PctI GAATGC 2 cut(s) 181, 256
PfeI GAWTC 3 cut(s) 173, 359, 715
PflMI CCANNNNNTGG 1 cut(s) 848
PfoI TCCNGGA 1 cut(s) 1198
PkrI GCNGC 6 cut(s) 31, 45, 886, 889, 892, 1059
PleI GAGTC 2 cut(s) 497, 1318
PpsI GAGTC 2 cut(s) 497, 1318
Psp124BI GAGCTC 2 cut(s) 958, 1157
Psp6I CCWGG 8 cut(s) 433, 726, 823, 907, 937, 1040, 1198, 1305
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 8 cut(s) 433, 726, 823, 907, 937, 1040, 1198, 1305
PspN4I GGNNCC 3 cut(s) 520, 1234, 1315
PspPI GGNCC 2 cut(s) 461, 1274
PsuI RGATCY 2 cut(s) 263, 518
RsaI GTAC 4 cut(s) 286, 1101, 1192, 1252
RsaNI GTAC 4 cut(s) 285, 1100, 1191, 1251
SacI GAGCTC 2 cut(s) 958, 1157
SaqAI TTAA 4 cut(s) 237, 668, 797, 1280
SatI GCNGC 6 cut(s) 30, 44, 885, 888, 891, 1058
Sau3AI GATC 2 cut(s) 263, 518
Sau96I GGNCC 2 cut(s) 461, 1274
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 2 cut(s) 497, 1318
ScrFI CCNGG 8 cut(s) 435, 728, 825, 909, 939, 1042, 1200, 1307
SduI GDGCHC 4 cut(s) 415, 628, 958, 1157
SfaNI GCATC 3 cut(s) 577, 699, 1217
SfcI CTRYAG 1 cut(s) 834
SinI GGWCC 2 cut(s) 461, 1274
SpeI ACTAGT 1 cut(s) 1336
SphI GCATGC 1 cut(s) 602
Sse9I AATT 6 cut(s) 205, 345, 693, 755, 798, 1182
SsiI CCGC 3 cut(s) 29, 637, 1187
SspMI CTAG 3 cut(s) 51, 1019, 1337
SstI GAGCTC 2 cut(s) 958, 1157
StyD4I CCNGG 8 cut(s) 433, 726, 823, 907, 937, 1040, 1198, 1305
StyI CCWWGG 3 cut(s) 477, 913, 964
TaaI ACNGT 6 cut(s) 140, 381, 548, 746, 1090, 1115
TasI AATT 6 cut(s) 205, 345, 693, 755, 798, 1182
TatI WGTACW 2 cut(s) 284, 1250
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 173, 359, 715
Tru1I TTAA 4 cut(s) 237, 668, 797, 1280
Tru9I TTAA 4 cut(s) 237, 668, 797, 1280
TscAI CASTG 3 cut(s) 174, 1095, 1334
TseFI GTSAC 2 cut(s) 296, 941
TseI GCWGC 5 cut(s) 43, 884, 887, 890, 1057
Tsp45I GTSAC 2 cut(s) 296, 941
TspDTI ATGAA 4 cut(s) 318, 642, 1232, 1254
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 3 cut(s) 174, 1095, 1334
Van91I CCANNNNNTGG 1 cut(s) 848
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 461, 1274
XapI RAATTY 2 cut(s) 345, 755
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 602
XspI CTAG 3 cut(s) 51, 1019, 1337
ZrmI AGTACT 1 cut(s) 286
Zsp2I ATGCAT 2 cut(s) 600, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.